HEADER TRANSCRIPTION 28-NOV-07 3BHQ TITLE CRYSTAL STRUCTURE OF A PUTATIVE TETR-FAMILY TRANSCRIPTIONAL REGULATOR TITLE 2 (MLR_4833) FROM MESORHIZOBIUM LOTI MAFF303099 AT 1.54 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: NP_105615.1, MLR4833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE TETR-FAMILY TRANSCRIPTIONAL REGULATOR, BACTERIAL REGULATORY KEYWDS 2 PROTEINS, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, KEYWDS 4 TRANSCRIPTION REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 09-OCT-24 3BHQ 1 REMARK REVDAT 7 25-JAN-23 3BHQ 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BHQ 1 REMARK LINK REVDAT 5 25-OCT-17 3BHQ 1 REMARK REVDAT 4 13-JUL-11 3BHQ 1 VERSN REVDAT 3 28-JUL-10 3BHQ 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BHQ 1 VERSN REVDAT 1 11-DEC-07 3BHQ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TETR-FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (NP_105615.1) FROM MESORHIZOBIUM LOTI AT 1.54 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5253 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3442 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2435 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4653 ; 1.572 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5934 ; 1.472 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 3.307 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.512 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;11.918 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;12.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3839 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 742 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2432 ; 0.143 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1684 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1743 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 296 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2421 ; 2.179 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 865 ; 0.437 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3405 ; 2.534 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 4.886 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1216 ; 6.687 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1148 21.5177 21.6754 REMARK 3 T TENSOR REMARK 3 T11: -0.0401 T22: -0.0163 REMARK 3 T33: -0.0561 T12: 0.0116 REMARK 3 T13: 0.0165 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.3483 L22: 0.3357 REMARK 3 L33: 0.3269 L12: 0.3793 REMARK 3 L13: -0.3539 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0924 S13: 0.0819 REMARK 3 S21: 0.0137 S22: 0.0328 S23: 0.0142 REMARK 3 S31: -0.0994 S32: -0.1163 S33: -0.0476 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 54.5046 3.5509 16.8833 REMARK 3 T TENSOR REMARK 3 T11: -0.0682 T22: -0.0833 REMARK 3 T33: -0.0742 T12: -0.0077 REMARK 3 T13: 0.0157 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4086 L22: 0.9000 REMARK 3 L33: 0.6280 L12: 0.1876 REMARK 3 L13: -0.2821 L23: -0.2450 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.0041 S13: -0.0561 REMARK 3 S21: 0.0309 S22: -0.0114 S23: 0.0645 REMARK 3 S31: 0.0925 S32: 0.0551 S33: 0.0263 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. CL IONS AND EDO MOLECULES FROM THE CRYSTALLIZATION/CRYO REMARK 3 SOLUTIONS REMARK 3 ARE MODELED. REMARK 4 REMARK 4 3BHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 0.97953 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 29.841 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : 0.54600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.0M LICL, 10.0% PEG 6000, REMARK 280 0.1M CITRATE PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.26700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.30650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.11050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.30650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.26700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.11050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 GLN A 208 REMARK 465 PRO A 209 REMARK 465 LYS A 210 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 ILE B 3 REMARK 465 ASP B 4 REMARK 465 GLY B 5 REMARK 465 GLN B 208 REMARK 465 PRO B 209 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ARG B 8 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 105 CD OE1 OE2 REMARK 470 LYS B 187 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 184 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 111 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 185 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 53 -58.87 67.29 REMARK 500 THR B 53 -59.67 80.36 REMARK 500 SER B 182 -170.45 116.81 REMARK 500 SER B 182 132.88 -26.52 REMARK 500 ASN B 183 -61.62 -103.56 REMARK 500 ASN B 183 153.33 -38.41 REMARK 500 ARG B 184 -7.54 93.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 222 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379524 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BHQ A 1 210 UNP Q98D70 Q98D70_RHILO 1 210 DBREF 3BHQ B 1 210 UNP Q98D70 Q98D70_RHILO 1 210 SEQADV 3BHQ GLY A 0 UNP Q98D70 EXPRESSION TAG SEQADV 3BHQ GLY B 0 UNP Q98D70 EXPRESSION TAG SEQRES 1 A 211 GLY MSE LYS ILE ASP GLY GLU THR ARG SER ALA ARG LYS SEQRES 2 A 211 ASP ARG GLU ILE ILE GLN ALA ALA THR ALA ALA PHE ILE SEQRES 3 A 211 SER LYS GLY TYR ASP GLY THR SER MSE GLU GLU ILE ALA SEQRES 4 A 211 THR LYS ALA GLY ALA SER LYS GLN THR VAL TYR LYS HIS SEQRES 5 A 211 PHE THR ASP LYS GLU THR LEU PHE GLY GLU VAL VAL LEU SEQRES 6 A 211 SER THR ALA SER GLN VAL ASN ASP ILE ILE GLU SER VAL SEQRES 7 A 211 THR THR LEU LEU SER GLU ALA ILE PHE MSE GLU GLY GLY SEQRES 8 A 211 LEU GLN GLN LEU ALA ARG ARG LEU ILE ALA VAL LEU MSE SEQRES 9 A 211 ASP GLU GLU LEU LEU LYS LEU ARG ARG LEU ILE ILE ALA SEQRES 10 A 211 ASN ALA ASP ARG MSE PRO GLN LEU GLY ARG ALA TRP TYR SEQRES 11 A 211 GLU LYS GLY PHE GLU ARG MSE LEU ALA SER THR ALA SER SEQRES 12 A 211 CYS PHE GLN LYS LEU THR ASN ARG GLY LEU ILE GLN THR SEQRES 13 A 211 GLY ASP PRO TYR LEU ALA ALA SER HIS LEU PHE GLY MSE SEQRES 14 A 211 LEU LEU TRP ILE PRO MSE ASN GLU ALA MSE PHE THR GLY SEQRES 15 A 211 SER ASN ARG ARG SER LYS ALA GLU LEU GLU ARG HIS ALA SEQRES 16 A 211 ASP ALA SER VAL GLU ALA PHE LEU ALA VAL TYR GLY VAL SEQRES 17 A 211 GLN PRO LYS SEQRES 1 B 211 GLY MSE LYS ILE ASP GLY GLU THR ARG SER ALA ARG LYS SEQRES 2 B 211 ASP ARG GLU ILE ILE GLN ALA ALA THR ALA ALA PHE ILE SEQRES 3 B 211 SER LYS GLY TYR ASP GLY THR SER MSE GLU GLU ILE ALA SEQRES 4 B 211 THR LYS ALA GLY ALA SER LYS GLN THR VAL TYR LYS HIS SEQRES 5 B 211 PHE THR ASP LYS GLU THR LEU PHE GLY GLU VAL VAL LEU SEQRES 6 B 211 SER THR ALA SER GLN VAL ASN ASP ILE ILE GLU SER VAL SEQRES 7 B 211 THR THR LEU LEU SER GLU ALA ILE PHE MSE GLU GLY GLY SEQRES 8 B 211 LEU GLN GLN LEU ALA ARG ARG LEU ILE ALA VAL LEU MSE SEQRES 9 B 211 ASP GLU GLU LEU LEU LYS LEU ARG ARG LEU ILE ILE ALA SEQRES 10 B 211 ASN ALA ASP ARG MSE PRO GLN LEU GLY ARG ALA TRP TYR SEQRES 11 B 211 GLU LYS GLY PHE GLU ARG MSE LEU ALA SER THR ALA SER SEQRES 12 B 211 CYS PHE GLN LYS LEU THR ASN ARG GLY LEU ILE GLN THR SEQRES 13 B 211 GLY ASP PRO TYR LEU ALA ALA SER HIS LEU PHE GLY MSE SEQRES 14 B 211 LEU LEU TRP ILE PRO MSE ASN GLU ALA MSE PHE THR GLY SEQRES 15 B 211 SER ASN ARG ARG SER LYS ALA GLU LEU GLU ARG HIS ALA SEQRES 16 B 211 ASP ALA SER VAL GLU ALA PHE LEU ALA VAL TYR GLY VAL SEQRES 17 B 211 GLN PRO LYS MODRES 3BHQ MSE A 34 MET SELENOMETHIONINE MODRES 3BHQ MSE A 87 MET SELENOMETHIONINE MODRES 3BHQ MSE A 103 MET SELENOMETHIONINE MODRES 3BHQ MSE A 121 MET SELENOMETHIONINE MODRES 3BHQ MSE A 136 MET SELENOMETHIONINE MODRES 3BHQ MSE A 168 MET SELENOMETHIONINE MODRES 3BHQ MSE A 174 MET SELENOMETHIONINE MODRES 3BHQ MSE A 178 MET SELENOMETHIONINE MODRES 3BHQ MSE B 34 MET SELENOMETHIONINE MODRES 3BHQ MSE B 87 MET SELENOMETHIONINE MODRES 3BHQ MSE B 103 MET SELENOMETHIONINE MODRES 3BHQ MSE B 121 MET SELENOMETHIONINE MODRES 3BHQ MSE B 136 MET SELENOMETHIONINE MODRES 3BHQ MSE B 168 MET SELENOMETHIONINE MODRES 3BHQ MSE B 174 MET SELENOMETHIONINE MODRES 3BHQ MSE B 178 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 87 8 HET MSE A 103 13 HET MSE A 121 8 HET MSE A 136 13 HET MSE A 168 8 HET MSE A 174 8 HET MSE A 178 8 HET MSE B 34 8 HET MSE B 87 8 HET MSE B 103 8 HET MSE B 121 13 HET MSE B 136 13 HET MSE B 168 8 HET MSE B 174 8 HET MSE B 178 8 HET CL A 211 1 HET CL A 212 1 HET EDO A 213 4 HET EDO A 214 4 HET EDO A 215 4 HET EDO A 216 4 HET EDO A 217 4 HET EDO A 218 4 HET EDO A 219 4 HET EDO A 220 4 HET EDO A 221 4 HET EDO A 222 4 HET CL B 211 1 HET EDO B 212 4 HET EDO B 213 8 HET EDO B 214 4 HET EDO B 215 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 5 EDO 14(C2 H6 O2) FORMUL 20 HOH *435(H2 O) HELIX 1 1 THR A 7 GLY A 28 1 22 HELIX 2 2 SER A 33 GLY A 42 1 10 HELIX 3 3 SER A 44 THR A 53 1 10 HELIX 4 4 ASP A 54 GLU A 83 1 30 HELIX 5 5 PHE A 86 MSE A 103 1 18 HELIX 6 6 ASP A 104 ASN A 117 1 14 HELIX 7 7 MSE A 121 GLY A 132 1 12 HELIX 8 8 GLY A 132 ARG A 150 1 19 HELIX 9 9 ASP A 157 GLY A 181 1 25 HELIX 10 10 SER A 186 GLY A 206 1 21 HELIX 11 11 THR B 7 GLY B 28 1 22 HELIX 12 12 SER B 33 GLY B 42 1 10 HELIX 13 13 SER B 44 THR B 53 1 10 HELIX 14 14 ASP B 54 GLU B 83 1 30 HELIX 15 15 PHE B 86 MSE B 103 1 18 HELIX 16 16 ASP B 104 ALA B 118 1 15 HELIX 17 17 MSE B 121 GLY B 132 1 12 HELIX 18 18 GLY B 132 ARG B 150 1 19 HELIX 19 19 ASP B 157 GLY B 181 1 25 HELIX 20 20 SER B 186 GLY B 206 1 21 LINK C SER A 33 N MSE A 34 1555 1555 1.32 LINK C MSE A 34 N GLU A 35 1555 1555 1.33 LINK C PHE A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N GLU A 88 1555 1555 1.34 LINK C LEU A 102 N MSE A 103 1555 1555 1.34 LINK C MSE A 103 N ASP A 104 1555 1555 1.33 LINK C ARG A 120 N MSE A 121 1555 1555 1.34 LINK C MSE A 121 N PRO A 122 1555 1555 1.35 LINK C ARG A 135 N MSE A 136 1555 1555 1.34 LINK C MSE A 136 N LEU A 137 1555 1555 1.34 LINK C GLY A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N LEU A 169 1555 1555 1.33 LINK C PRO A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N ASN A 175 1555 1555 1.33 LINK C ALA A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N PHE A 179 1555 1555 1.32 LINK C SER B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N GLU B 35 1555 1555 1.34 LINK C PHE B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N GLU B 88 1555 1555 1.33 LINK C LEU B 102 N MSE B 103 1555 1555 1.33 LINK C MSE B 103 N ASP B 104 1555 1555 1.32 LINK C ARG B 120 N MSE B 121 1555 1555 1.34 LINK C MSE B 121 N PRO B 122 1555 1555 1.34 LINK C ARG B 135 N MSE B 136 1555 1555 1.34 LINK C MSE B 136 N LEU B 137 1555 1555 1.34 LINK C GLY B 167 N MSE B 168 1555 1555 1.33 LINK C MSE B 168 N LEU B 169 1555 1555 1.33 LINK C PRO B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N ASN B 175 1555 1555 1.32 LINK C ALA B 177 N MSE B 178 1555 1555 1.32 LINK C MSE B 178 N PHE B 179 1555 1555 1.33 SITE 1 AC1 2 ARG B 111 TRP B 128 SITE 1 AC2 3 LYS A 45 HOH A 227 HOH A 378 SITE 1 AC3 3 TYR A 29 ASN A 117 HOH A 258 SITE 1 AC4 6 ALA A 23 SER A 26 LYS A 27 LYS A 40 SITE 2 AC4 6 HOH A 351 HOH A 434 SITE 1 AC5 6 GLN A 69 VAL A 70 ASP A 104 EDO A 217 SITE 2 AC5 6 HOH A 379 HOH A 427 SITE 1 AC6 8 MSE A 174 ASN A 175 HOH A 431 HOH A 433 SITE 2 AC6 8 ARG B 111 MSE B 174 ASN B 175 MSE B 178 SITE 1 AC7 3 TYR A 29 GLU A 56 ARG A 120 SITE 1 AC8 5 ILE A 25 THR A 66 EDO A 214 HOH A 314 SITE 2 AC8 5 HOH A 386 SITE 1 AC9 7 GLN A 46 LYS A 50 HOH A 281 GLU B 130 SITE 2 AC9 7 GLU B 134 EDO B 215 HOH B 429 SITE 1 BC1 5 GLY A 60 LEU A 64 GLN A 123 HOH A 440 SITE 2 BC1 5 HOH B 255 SITE 1 BC2 8 THR B 21 THR B 66 GLN B 69 GLU B 106 SITE 2 BC2 8 HOH B 301 HOH B 350 HOH B 353 HOH B 412 SITE 1 BC3 7 GLN A 93 ARG A 96 HOH A 248 LYS B 12 SITE 2 BC3 7 ALA B 43 SER B 44 THR B 47 SITE 1 BC4 5 ILE A 25 SER A 26 GLY A 28 HOH A 384 SITE 2 BC4 5 HOH A 432 SITE 1 BC5 4 GLU B 130 LYS B 131 ARG B 135 EDO B 212 SITE 1 BC6 6 ILE A 115 ALA A 116 ASP A 119 EDO A 221 SITE 2 BC6 6 HOH A 436 ALA B 116 SITE 1 BC7 4 ASP A 119 EDO A 220 HOH A 263 SER B 26 SITE 1 BC8 6 HOH A 249 HOH A 313 HOH A 378 GLN B 46 SITE 2 BC8 6 TYR B 49 LYS B 50 CRYST1 54.534 64.221 142.613 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007012 0.00000