data_3BJ5 # _entry.id 3BJ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BJ5 pdb_00003bj5 10.2210/pdb3bj5/pdb RCSB RCSB045584 ? ? WWPDB D_1000045584 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BJ5 _pdbx_database_status.recvd_initial_deposition_date 2007-12-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruddock, L.W.' 1 'Nguyen, V.D.' 2 'Wierenga, R.K.' 3 'Haapalainen, A.M.' 4 # _citation.id primary _citation.title ;Alternative conformations of the x region of human protein disulphide-isomerase modulate exposure of the substrate binding b' domain ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 383 _citation.page_first 1144 _citation.page_last 1155 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18801374 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.08.085 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nguyen, V.D.' 1 ? primary 'Wallis, K.' 2 ? primary 'Howard, M.J.' 3 ? primary 'Haapalainen, A.M.' 4 ? primary 'Salo, K.E.H.' 5 ? primary 'Saaranen, M.J.' 6 ? primary 'Sidhu, A.' 7 ? primary 'Wierenga, R.K.' 8 ? primary 'Freedman, R.B.' 9 ? primary 'Ruddock, L.W.' 10 ? primary 'Williamson, R.A.' 11 ? # _cell.entry_id 3BJ5 _cell.length_a 57.370 _cell.length_b 57.370 _cell.length_c 68.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BJ5 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein disulfide-isomerase' 17270.775 1 5.3.4.1 I272A ;b'x domain, UNPR residues 230-368 ; ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 45 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PDI, Prolyl 4-hydroxylase subunit beta, Cellular thyroid hormone-binding protein, p55' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRI LEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQP ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRI LEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 LYS n 1 10 HIS n 1 11 ASN n 1 12 GLN n 1 13 LEU n 1 14 PRO n 1 15 LEU n 1 16 VAL n 1 17 ILE n 1 18 GLU n 1 19 PHE n 1 20 THR n 1 21 GLU n 1 22 GLN n 1 23 THR n 1 24 ALA n 1 25 PRO n 1 26 LYS n 1 27 ILE n 1 28 PHE n 1 29 GLY n 1 30 GLY n 1 31 GLU n 1 32 ILE n 1 33 LYS n 1 34 THR n 1 35 HIS n 1 36 ILE n 1 37 LEU n 1 38 LEU n 1 39 PHE n 1 40 LEU n 1 41 PRO n 1 42 LYS n 1 43 SER n 1 44 VAL n 1 45 SER n 1 46 ASP n 1 47 TYR n 1 48 ASP n 1 49 GLY n 1 50 LYS n 1 51 LEU n 1 52 SER n 1 53 ASN n 1 54 PHE n 1 55 LYS n 1 56 THR n 1 57 ALA n 1 58 ALA n 1 59 GLU n 1 60 SER n 1 61 PHE n 1 62 LYS n 1 63 GLY n 1 64 LYS n 1 65 ILE n 1 66 LEU n 1 67 PHE n 1 68 ALA n 1 69 PHE n 1 70 ILE n 1 71 ASP n 1 72 SER n 1 73 ASP n 1 74 HIS n 1 75 THR n 1 76 ASP n 1 77 ASN n 1 78 GLN n 1 79 ARG n 1 80 ILE n 1 81 LEU n 1 82 GLU n 1 83 PHE n 1 84 PHE n 1 85 GLY n 1 86 LEU n 1 87 LYS n 1 88 LYS n 1 89 GLU n 1 90 GLU n 1 91 CYS n 1 92 PRO n 1 93 ALA n 1 94 VAL n 1 95 ARG n 1 96 LEU n 1 97 ILE n 1 98 THR n 1 99 LEU n 1 100 GLU n 1 101 GLU n 1 102 GLU n 1 103 MET n 1 104 THR n 1 105 LYS n 1 106 TYR n 1 107 LYS n 1 108 PRO n 1 109 GLU n 1 110 SER n 1 111 GLU n 1 112 GLU n 1 113 LEU n 1 114 THR n 1 115 ALA n 1 116 GLU n 1 117 ARG n 1 118 ILE n 1 119 THR n 1 120 GLU n 1 121 PHE n 1 122 CYS n 1 123 HIS n 1 124 ARG n 1 125 PHE n 1 126 LEU n 1 127 GLU n 1 128 GLY n 1 129 LYS n 1 130 ILE n 1 131 LYS n 1 132 PRO n 1 133 HIS n 1 134 LEU n 1 135 MET n 1 136 SER n 1 137 GLN n 1 138 GLU n 1 139 LEU n 1 140 PRO n 1 141 GLU n 1 142 ASP n 1 143 TRP n 1 144 ASP n 1 145 LYS n 1 146 GLN n 1 147 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'P4HB, ERBA2L, PDI, PDIA1, PO4DB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)plysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pet23a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDIA1_HUMAN _struct_ref.pdbx_db_accession P07237 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKK EECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQP ; _struct_ref.pdbx_align_begin 230 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BJ5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07237 _struct_ref_seq.db_align_beg 230 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 368 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 213 _struct_ref_seq.pdbx_auth_seq_align_end 351 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BJ5 MET A 1 ? UNP P07237 ? ? 'initiating methionine' 205 1 1 3BJ5 HIS A 2 ? UNP P07237 ? ? 'expression tag' 206 2 1 3BJ5 HIS A 3 ? UNP P07237 ? ? 'expression tag' 207 3 1 3BJ5 HIS A 4 ? UNP P07237 ? ? 'expression tag' 208 4 1 3BJ5 HIS A 5 ? UNP P07237 ? ? 'expression tag' 209 5 1 3BJ5 HIS A 6 ? UNP P07237 ? ? 'expression tag' 210 6 1 3BJ5 HIS A 7 ? UNP P07237 ? ? 'expression tag' 211 7 1 3BJ5 MET A 8 ? UNP P07237 ? ? 'expression tag' 212 8 1 3BJ5 ALA A 68 ? UNP P07237 ILE 289 'engineered mutation' 272 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BJ5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_percent_sol 34.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '2.95M Ammonium sulfate, 0.2M NaCl, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295.15K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si[111], horizontally focussing' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.89997 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.89997 # _reflns.entry_id 3BJ5 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 49.69 _reflns.number_all 6879 _reflns.number_obs 6879 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.84 _reflns.B_iso_Wilson_estimate 41.042 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.26 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.17 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 17.8 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 849 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BJ5 _refine.ls_number_reflns_obs 6533 _refine.ls_number_reflns_all 0 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.11 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.29 _refine.ls_R_factor_obs 0.19683 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1938 _refine.ls_R_factor_R_free 0.25525 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 344 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 37.401 _refine.aniso_B[1][1] -0.18 _refine.aniso_B[2][2] -0.18 _refine.aniso_B[3][3] 0.27 _refine.aniso_B[1][2] -0.09 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.318 _refine.pdbx_overall_ESU_R_Free 0.236 _refine.overall_SU_ML 0.174 _refine.overall_SU_B 13.505 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1063 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 1113 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 18.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1091 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.362 1.981 ? 1468 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.882 5.000 ? 129 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.457 25.000 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.101 15.000 ? 208 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.740 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 160 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 807 'X-RAY DIFFRACTION' ? r_nbd_refined 0.221 0.200 ? 474 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 722 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.190 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.233 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.240 0.200 ? 10 'X-RAY DIFFRACTION' ? r_mcbond_it 0.754 1.500 ? 674 'X-RAY DIFFRACTION' ? r_mcangle_it 1.286 2.000 ? 1053 'X-RAY DIFFRACTION' ? r_scbond_it 1.760 3.000 ? 468 'X-RAY DIFFRACTION' ? r_scangle_it 2.841 4.500 ? 415 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 467 _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.percent_reflns_obs 99.80 _refine_ls_shell.R_factor_R_free 0.275 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BJ5 _struct.title ;Alternative conformations of the x region of human protein disulphide-isomerase modulate exposure of the substrate binding b' domain ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BJ5 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'Thioredoxin fold, Chaperone, Endoplasmic reticulum, Isomerase, Membrane, Redox-active center' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 23 ? GLY A 29 ? THR A 227 GLY A 233 1 ? 7 HELX_P HELX_P2 2 ASP A 46 ? SER A 60 ? ASP A 250 SER A 264 1 ? 15 HELX_P HELX_P3 3 HIS A 74 ? ASP A 76 ? HIS A 278 ASP A 280 5 ? 3 HELX_P HELX_P4 4 ASN A 77 ? PHE A 84 ? ASN A 281 PHE A 288 1 ? 8 HELX_P HELX_P5 5 LYS A 87 ? CYS A 91 ? LYS A 291 CYS A 295 5 ? 5 HELX_P HELX_P6 6 THR A 114 ? GLU A 127 ? THR A 318 GLU A 331 1 ? 14 HELX_P HELX_P7 7 PRO A 140 ? ASP A 144 ? PRO A 344 ASP A 348 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 91 A . ? CYS 295 A PRO 92 A ? PRO 296 A 1 7.52 2 GLU 100 A . ? GLU 304 A GLU 101 A ? GLU 305 A 1 0.23 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 16 ? GLU A 18 ? VAL A 220 GLU A 222 A 2 LEU A 66 ? ILE A 70 ? LEU A 270 ILE A 274 A 3 THR A 34 ? PHE A 39 ? THR A 238 PHE A 243 A 4 ALA A 93 ? THR A 98 ? ALA A 297 THR A 302 A 5 THR A 104 ? TYR A 106 ? THR A 308 TYR A 310 A 6 PRO A 132 ? LEU A 134 ? PRO A 336 LEU A 338 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 17 ? N ILE A 221 O PHE A 67 ? O PHE A 271 A 2 3 O LEU A 66 ? O LEU A 270 N ILE A 36 ? N ILE A 240 A 3 4 N PHE A 39 ? N PHE A 243 O ALA A 93 ? O ALA A 297 A 4 5 N LEU A 96 ? N LEU A 300 O TYR A 106 ? O TYR A 310 A 5 6 N LYS A 105 ? N LYS A 309 O HIS A 133 ? O HIS A 337 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 MET A 135 ? MET A 339 . ? 1_555 ? 2 AC1 3 SER A 136 ? SER A 340 . ? 1_555 ? 3 AC1 3 HOH C . ? HOH A 359 . ? 1_555 ? # _database_PDB_matrix.entry_id 3BJ5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BJ5 _atom_sites.fract_transf_matrix[1][1] 0.017431 _atom_sites.fract_transf_matrix[1][2] 0.010064 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020127 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014639 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 205 ? ? ? A . n A 1 2 HIS 2 206 ? ? ? A . n A 1 3 HIS 3 207 ? ? ? A . n A 1 4 HIS 4 208 ? ? ? A . n A 1 5 HIS 5 209 ? ? ? A . n A 1 6 HIS 6 210 ? ? ? A . n A 1 7 HIS 7 211 ? ? ? A . n A 1 8 MET 8 212 ? ? ? A . n A 1 9 LYS 9 213 ? ? ? A . n A 1 10 HIS 10 214 ? ? ? A . n A 1 11 ASN 11 215 ? ? ? A . n A 1 12 GLN 12 216 ? ? ? A . n A 1 13 LEU 13 217 ? ? ? A . n A 1 14 PRO 14 218 ? ? ? A . n A 1 15 LEU 15 219 219 LEU LEU A . n A 1 16 VAL 16 220 220 VAL VAL A . n A 1 17 ILE 17 221 221 ILE ILE A . n A 1 18 GLU 18 222 222 GLU GLU A . n A 1 19 PHE 19 223 223 PHE PHE A . n A 1 20 THR 20 224 224 THR THR A . n A 1 21 GLU 21 225 225 GLU GLU A . n A 1 22 GLN 22 226 226 GLN GLN A . n A 1 23 THR 23 227 227 THR THR A . n A 1 24 ALA 24 228 228 ALA ALA A . n A 1 25 PRO 25 229 229 PRO PRO A . n A 1 26 LYS 26 230 230 LYS LYS A . n A 1 27 ILE 27 231 231 ILE ILE A . n A 1 28 PHE 28 232 232 PHE PHE A . n A 1 29 GLY 29 233 233 GLY GLY A . n A 1 30 GLY 30 234 234 GLY GLY A . n A 1 31 GLU 31 235 235 GLU GLU A . n A 1 32 ILE 32 236 236 ILE ILE A . n A 1 33 LYS 33 237 237 LYS LYS A . n A 1 34 THR 34 238 238 THR THR A . n A 1 35 HIS 35 239 239 HIS HIS A . n A 1 36 ILE 36 240 240 ILE ILE A . n A 1 37 LEU 37 241 241 LEU LEU A . n A 1 38 LEU 38 242 242 LEU LEU A . n A 1 39 PHE 39 243 243 PHE PHE A . n A 1 40 LEU 40 244 244 LEU LEU A . n A 1 41 PRO 41 245 245 PRO PRO A . n A 1 42 LYS 42 246 246 LYS LYS A . n A 1 43 SER 43 247 247 SER SER A . n A 1 44 VAL 44 248 248 VAL VAL A . n A 1 45 SER 45 249 249 SER SER A . n A 1 46 ASP 46 250 250 ASP ASP A . n A 1 47 TYR 47 251 251 TYR TYR A . n A 1 48 ASP 48 252 252 ASP ASP A . n A 1 49 GLY 49 253 253 GLY GLY A . n A 1 50 LYS 50 254 254 LYS LYS A . n A 1 51 LEU 51 255 255 LEU LEU A . n A 1 52 SER 52 256 256 SER SER A . n A 1 53 ASN 53 257 257 ASN ASN A . n A 1 54 PHE 54 258 258 PHE PHE A . n A 1 55 LYS 55 259 259 LYS LYS A . n A 1 56 THR 56 260 260 THR THR A . n A 1 57 ALA 57 261 261 ALA ALA A . n A 1 58 ALA 58 262 262 ALA ALA A . n A 1 59 GLU 59 263 263 GLU GLU A . n A 1 60 SER 60 264 264 SER SER A . n A 1 61 PHE 61 265 265 PHE PHE A . n A 1 62 LYS 62 266 266 LYS LYS A . n A 1 63 GLY 63 267 267 GLY GLY A . n A 1 64 LYS 64 268 268 LYS LYS A . n A 1 65 ILE 65 269 269 ILE ILE A . n A 1 66 LEU 66 270 270 LEU LEU A . n A 1 67 PHE 67 271 271 PHE PHE A . n A 1 68 ALA 68 272 272 ALA ALA A . n A 1 69 PHE 69 273 273 PHE PHE A . n A 1 70 ILE 70 274 274 ILE ILE A . n A 1 71 ASP 71 275 275 ASP ASP A . n A 1 72 SER 72 276 276 SER SER A . n A 1 73 ASP 73 277 277 ASP ASP A . n A 1 74 HIS 74 278 278 HIS HIS A . n A 1 75 THR 75 279 279 THR THR A . n A 1 76 ASP 76 280 280 ASP ASP A . n A 1 77 ASN 77 281 281 ASN ASN A . n A 1 78 GLN 78 282 282 GLN GLN A . n A 1 79 ARG 79 283 283 ARG ARG A . n A 1 80 ILE 80 284 284 ILE ILE A . n A 1 81 LEU 81 285 285 LEU LEU A . n A 1 82 GLU 82 286 286 GLU GLU A . n A 1 83 PHE 83 287 287 PHE PHE A . n A 1 84 PHE 84 288 288 PHE PHE A . n A 1 85 GLY 85 289 289 GLY GLY A . n A 1 86 LEU 86 290 290 LEU LEU A . n A 1 87 LYS 87 291 291 LYS LYS A . n A 1 88 LYS 88 292 292 LYS LYS A . n A 1 89 GLU 89 293 293 GLU GLU A . n A 1 90 GLU 90 294 294 GLU GLU A . n A 1 91 CYS 91 295 295 CYS CYS A . n A 1 92 PRO 92 296 296 PRO PRO A . n A 1 93 ALA 93 297 297 ALA ALA A . n A 1 94 VAL 94 298 298 VAL VAL A . n A 1 95 ARG 95 299 299 ARG ARG A . n A 1 96 LEU 96 300 300 LEU LEU A . n A 1 97 ILE 97 301 301 ILE ILE A . n A 1 98 THR 98 302 302 THR THR A . n A 1 99 LEU 99 303 303 LEU LEU A . n A 1 100 GLU 100 304 304 GLU GLU A . n A 1 101 GLU 101 305 305 GLU GLU A . n A 1 102 GLU 102 306 306 GLU GLU A . n A 1 103 MET 103 307 307 MET MET A . n A 1 104 THR 104 308 308 THR THR A . n A 1 105 LYS 105 309 309 LYS LYS A . n A 1 106 TYR 106 310 310 TYR TYR A . n A 1 107 LYS 107 311 311 LYS LYS A . n A 1 108 PRO 108 312 312 PRO PRO A . n A 1 109 GLU 109 313 313 GLU GLU A . n A 1 110 SER 110 314 314 SER SER A . n A 1 111 GLU 111 315 315 GLU GLU A . n A 1 112 GLU 112 316 316 GLU GLU A . n A 1 113 LEU 113 317 317 LEU LEU A . n A 1 114 THR 114 318 318 THR THR A . n A 1 115 ALA 115 319 319 ALA ALA A . n A 1 116 GLU 116 320 320 GLU GLU A . n A 1 117 ARG 117 321 321 ARG ARG A . n A 1 118 ILE 118 322 322 ILE ILE A . n A 1 119 THR 119 323 323 THR THR A . n A 1 120 GLU 120 324 324 GLU GLU A . n A 1 121 PHE 121 325 325 PHE PHE A . n A 1 122 CYS 122 326 326 CYS CYS A . n A 1 123 HIS 123 327 327 HIS HIS A . n A 1 124 ARG 124 328 328 ARG ARG A . n A 1 125 PHE 125 329 329 PHE PHE A . n A 1 126 LEU 126 330 330 LEU LEU A . n A 1 127 GLU 127 331 331 GLU GLU A . n A 1 128 GLY 128 332 332 GLY GLY A . n A 1 129 LYS 129 333 333 LYS LYS A . n A 1 130 ILE 130 334 334 ILE ILE A . n A 1 131 LYS 131 335 335 LYS LYS A . n A 1 132 PRO 132 336 336 PRO PRO A . n A 1 133 HIS 133 337 337 HIS HIS A . n A 1 134 LEU 134 338 338 LEU LEU A . n A 1 135 MET 135 339 339 MET MET A . n A 1 136 SER 136 340 340 SER SER A . n A 1 137 GLN 137 341 341 GLN GLN A . n A 1 138 GLU 138 342 342 GLU GLU A . n A 1 139 LEU 139 343 343 LEU LEU A . n A 1 140 PRO 140 344 344 PRO PRO A . n A 1 141 GLU 141 345 345 GLU GLU A . n A 1 142 ASP 142 346 346 ASP ASP A . n A 1 143 TRP 143 347 347 TRP TRP A . n A 1 144 ASP 144 348 348 ASP ASP A . n A 1 145 LYS 145 349 ? ? ? A . n A 1 146 GLN 146 350 ? ? ? A . n A 1 147 PRO 147 351 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 3 HOH 1 352 1 HOH HOH A . C 3 HOH 2 353 2 HOH HOH A . C 3 HOH 3 354 3 HOH HOH A . C 3 HOH 4 355 4 HOH HOH A . C 3 HOH 5 356 5 HOH HOH A . C 3 HOH 6 357 6 HOH HOH A . C 3 HOH 7 358 7 HOH HOH A . C 3 HOH 8 359 8 HOH HOH A . C 3 HOH 9 360 9 HOH HOH A . C 3 HOH 10 361 10 HOH HOH A . C 3 HOH 11 362 11 HOH HOH A . C 3 HOH 12 363 12 HOH HOH A . C 3 HOH 13 364 13 HOH HOH A . C 3 HOH 14 365 14 HOH HOH A . C 3 HOH 15 366 15 HOH HOH A . C 3 HOH 16 367 16 HOH HOH A . C 3 HOH 17 368 17 HOH HOH A . C 3 HOH 18 369 18 HOH HOH A . C 3 HOH 19 370 19 HOH HOH A . C 3 HOH 20 371 20 HOH HOH A . C 3 HOH 21 372 21 HOH HOH A . C 3 HOH 22 373 22 HOH HOH A . C 3 HOH 23 374 23 HOH HOH A . C 3 HOH 24 375 24 HOH HOH A . C 3 HOH 25 376 25 HOH HOH A . C 3 HOH 26 377 26 HOH HOH A . C 3 HOH 27 378 27 HOH HOH A . C 3 HOH 28 379 28 HOH HOH A . C 3 HOH 29 380 29 HOH HOH A . C 3 HOH 30 381 30 HOH HOH A . C 3 HOH 31 382 31 HOH HOH A . C 3 HOH 32 383 32 HOH HOH A . C 3 HOH 33 384 33 HOH HOH A . C 3 HOH 34 385 34 HOH HOH A . C 3 HOH 35 386 35 HOH HOH A . C 3 HOH 36 387 36 HOH HOH A . C 3 HOH 37 388 37 HOH HOH A . C 3 HOH 38 389 38 HOH HOH A . C 3 HOH 39 390 39 HOH HOH A . C 3 HOH 40 391 40 HOH HOH A . C 3 HOH 41 392 41 HOH HOH A . C 3 HOH 42 393 42 HOH HOH A . C 3 HOH 43 394 43 HOH HOH A . C 3 HOH 44 395 44 HOH HOH A . C 3 HOH 45 396 45 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' diffrn_source 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.4740 _pdbx_refine_tls.origin_y 3.6730 _pdbx_refine_tls.origin_z 5.6870 _pdbx_refine_tls.T[1][1] -0.0834 _pdbx_refine_tls.T[2][2] -0.1470 _pdbx_refine_tls.T[3][3] -0.1201 _pdbx_refine_tls.T[1][2] -0.0156 _pdbx_refine_tls.T[1][3] -0.0598 _pdbx_refine_tls.T[2][3] 0.0017 _pdbx_refine_tls.L[1][1] 3.3596 _pdbx_refine_tls.L[2][2] 4.2428 _pdbx_refine_tls.L[3][3] 2.7994 _pdbx_refine_tls.L[1][2] -1.5443 _pdbx_refine_tls.L[1][3] 1.3250 _pdbx_refine_tls.L[2][3] 0.7830 _pdbx_refine_tls.S[1][1] 0.1516 _pdbx_refine_tls.S[1][2] -0.0463 _pdbx_refine_tls.S[1][3] -0.1538 _pdbx_refine_tls.S[2][1] 0.1076 _pdbx_refine_tls.S[2][2] 0.0076 _pdbx_refine_tls.S[2][3] -0.1302 _pdbx_refine_tls.S[3][1] 0.2855 _pdbx_refine_tls.S[3][2] -0.1009 _pdbx_refine_tls.S[3][3] -0.1592 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 219 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 15 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 348 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 144 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0028 ? 1 HKL-2000 'data collection' . ? 2 XDS 'data reduction' . ? 3 XDS 'data scaling' . ? 4 MOLREP phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 379 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 380 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 356 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 356 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 205 ? A MET 1 2 1 Y 1 A HIS 206 ? A HIS 2 3 1 Y 1 A HIS 207 ? A HIS 3 4 1 Y 1 A HIS 208 ? A HIS 4 5 1 Y 1 A HIS 209 ? A HIS 5 6 1 Y 1 A HIS 210 ? A HIS 6 7 1 Y 1 A HIS 211 ? A HIS 7 8 1 Y 1 A MET 212 ? A MET 8 9 1 Y 1 A LYS 213 ? A LYS 9 10 1 Y 1 A HIS 214 ? A HIS 10 11 1 Y 1 A ASN 215 ? A ASN 11 12 1 Y 1 A GLN 216 ? A GLN 12 13 1 Y 1 A LEU 217 ? A LEU 13 14 1 Y 1 A PRO 218 ? A PRO 14 15 1 Y 1 A LYS 349 ? A LYS 145 16 1 Y 1 A GLN 350 ? A GLN 146 17 1 Y 1 A PRO 351 ? A PRO 147 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #