HEADER TRANSFERASE 03-DEC-07 3BJE TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI NUCLEOSIDE PHOSPHORYLASE SHOWS TITLE 2 URIDINE PHOSPHORYLASE ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE PHOSPHORYLASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 STRAIN: GUTAT10.1; SOURCE 5 GENE: TB927.8.4430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS NUCLEOSIDE PHOSPHORYLASE, URIDINE PHOSPHORYLASE, STRUCTURAL GENOMICS, KEYWDS 2 MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, KEYWDS 3 MSGPP, TRYPANOSOMA, BRUCEI, SLEEPING SICKNESS, GLYCOSYLTRANSFERASE, KEYWDS 4 TRANSFERASE, PSI-2, PROTEIN STRUCTURE INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 6 21-FEB-24 3BJE 1 HETSYN REVDAT 5 29-JUL-20 3BJE 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 3BJE 1 VERSN REVDAT 3 23-FEB-10 3BJE 1 JRNL REVDAT 2 24-FEB-09 3BJE 1 VERSN REVDAT 1 18-DEC-07 3BJE 0 JRNL AUTH E.T.LARSON,D.G.MUDEPPA,J.R.GILLESPIE,N.MUELLER,A.J.NAPULI, JRNL AUTH 2 J.A.ARIF,J.ROSS,T.L.ARAKAKI,A.LAURICELLA,G.DETITTA,J.LUFT, JRNL AUTH 3 F.ZUCKER,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS,F.S.BUCKNER, JRNL AUTH 4 P.K.RATHOD,W.G.HOL,E.A.MERRITT JRNL TITL THE CRYSTAL STRUCTURE AND ACTIVITY OF A PUTATIVE JRNL TITL 2 TRYPANOSOMAL NUCLEOSIDE PHOSPHORYLASE REVEAL IT TO BE A JRNL TITL 3 HOMODIMERIC URIDINE PHOSPHORYLASE JRNL REF J.MOL.BIOL. V. 396 1244 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20070944 JRNL DOI 10.1016/J.JMB.2010.01.013 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 123193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5846 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5182 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3544 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7017 ; 1.325 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8649 ; 0.867 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 5.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;33.398 ;23.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 916 ;11.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;16.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 801 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5806 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1040 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 989 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3970 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2573 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2732 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 439 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.048 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1 ; 0.072 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.095 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3407 ; 1.722 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1356 ; 0.477 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5287 ; 2.267 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2017 ; 2.948 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1718 ; 4.300 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4340 -6.6596 10.8574 REMARK 3 T TENSOR REMARK 3 T11: -0.0140 T22: -0.0105 REMARK 3 T33: 0.0166 T12: 0.0040 REMARK 3 T13: -0.0102 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.5867 L22: 1.1134 REMARK 3 L33: 0.4108 L12: 0.6047 REMARK 3 L13: -0.2584 L23: -0.1202 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.1084 S13: -0.2521 REMARK 3 S21: -0.1310 S22: -0.0273 S23: 0.0893 REMARK 3 S31: 0.0724 S32: -0.0455 S33: 0.1024 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2138 -2.3940 10.7313 REMARK 3 T TENSOR REMARK 3 T11: -0.0296 T22: 0.0077 REMARK 3 T33: -0.0069 T12: 0.0131 REMARK 3 T13: -0.0084 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.6822 L22: 0.6918 REMARK 3 L33: 0.3657 L12: 0.4320 REMARK 3 L13: -0.2290 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.0306 S13: -0.1278 REMARK 3 S21: -0.0426 S22: -0.0395 S23: 0.0746 REMARK 3 S31: 0.0361 S32: -0.0288 S33: 0.0254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7784 5.6912 -6.6783 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0640 REMARK 3 T33: -0.0593 T12: 0.0208 REMARK 3 T13: -0.0711 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 4.4763 L22: 7.5710 REMARK 3 L33: 6.1868 L12: -1.9250 REMARK 3 L13: 1.2468 L23: -0.3550 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.4191 S13: 0.1542 REMARK 3 S21: -0.5543 S22: -0.0844 S23: 0.2672 REMARK 3 S31: -0.0507 S32: -0.3662 S33: 0.0671 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0947 8.8940 8.2537 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.0386 REMARK 3 T33: 0.0259 T12: 0.0337 REMARK 3 T13: -0.0327 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.6482 L22: 0.7446 REMARK 3 L33: 1.5315 L12: 0.1607 REMARK 3 L13: 0.2913 L23: 0.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.1660 S13: 0.1683 REMARK 3 S21: -0.1384 S22: -0.0343 S23: 0.2108 REMARK 3 S31: -0.1307 S32: -0.1689 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7504 13.2721 20.9439 REMARK 3 T TENSOR REMARK 3 T11: 0.0011 T22: 0.0216 REMARK 3 T33: -0.0041 T12: 0.0185 REMARK 3 T13: 0.0050 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.3354 L22: 0.9184 REMARK 3 L33: 0.6569 L12: 0.2332 REMARK 3 L13: -0.1296 L23: 0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.1526 S13: 0.1792 REMARK 3 S21: 0.0223 S22: -0.0754 S23: 0.0923 REMARK 3 S31: -0.1427 S32: -0.0903 S33: 0.0346 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6708 24.2218 20.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: -0.0424 REMARK 3 T33: 0.0092 T12: 0.0164 REMARK 3 T13: -0.0131 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.8445 L22: 1.9490 REMARK 3 L33: 1.6294 L12: -0.6930 REMARK 3 L13: 0.7549 L23: 0.6697 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: 0.0740 S13: 0.2750 REMARK 3 S21: -0.1373 S22: -0.0441 S23: 0.0824 REMARK 3 S31: -0.2917 S32: -0.0285 S33: 0.0941 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1565 11.6067 24.8451 REMARK 3 T TENSOR REMARK 3 T11: -0.0456 T22: 0.0672 REMARK 3 T33: 0.0555 T12: 0.0349 REMARK 3 T13: 0.0331 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 2.8739 L22: 1.4181 REMARK 3 L33: 0.9516 L12: 0.5985 REMARK 3 L13: -0.1474 L23: -0.1159 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.3839 S13: 0.0717 REMARK 3 S21: 0.1275 S22: -0.1169 S23: 0.3937 REMARK 3 S31: -0.0579 S32: -0.2523 S33: 0.0762 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6214 6.9729 30.7767 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0190 REMARK 3 T33: -0.0428 T12: 0.0009 REMARK 3 T13: 0.0254 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.6993 L22: 0.9651 REMARK 3 L33: 0.6898 L12: -0.1906 REMARK 3 L13: 0.3266 L23: 0.1795 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.1957 S13: 0.0282 REMARK 3 S21: 0.1411 S22: -0.0338 S23: 0.0432 REMARK 3 S31: -0.0005 S32: -0.1386 S33: 0.0566 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0424 14.2799 23.6720 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: -0.0003 REMARK 3 T33: -0.0207 T12: 0.0369 REMARK 3 T13: 0.0094 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.7080 L22: 0.6934 REMARK 3 L33: 0.8849 L12: 0.2882 REMARK 3 L13: 0.5000 L23: 0.1595 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.1453 S13: 0.1780 REMARK 3 S21: 0.0441 S22: -0.0789 S23: 0.0999 REMARK 3 S31: -0.1088 S32: -0.1926 S33: 0.0945 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6431 5.1595 39.5171 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.0695 REMARK 3 T33: 0.0362 T12: 0.0180 REMARK 3 T13: -0.0050 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 12.4436 L22: 5.8477 REMARK 3 L33: 5.3307 L12: 8.0488 REMARK 3 L13: 0.3683 L23: 2.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.6567 S12: -1.4337 S13: -0.0849 REMARK 3 S21: 0.9377 S22: -0.5407 S23: -0.1983 REMARK 3 S31: -0.2822 S32: -0.5124 S33: -0.1159 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6106 0.1791 27.8814 REMARK 3 T TENSOR REMARK 3 T11: -0.0552 T22: 0.0848 REMARK 3 T33: 0.0124 T12: -0.0417 REMARK 3 T13: 0.0315 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 3.7454 L22: 2.8870 REMARK 3 L33: 5.0859 L12: 0.0916 REMARK 3 L13: 1.7570 L23: -1.8620 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: -0.4806 S13: -0.2186 REMARK 3 S21: 0.1539 S22: -0.1164 S23: 0.0604 REMARK 3 S31: 0.2709 S32: -0.3437 S33: -0.0360 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3018 -6.0045 38.5821 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: 0.0726 REMARK 3 T33: 0.0102 T12: 0.0294 REMARK 3 T13: -0.0001 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 10.9899 L22: 108.7779 REMARK 3 L33: 8.3249 L12: 28.9340 REMARK 3 L13: -8.6452 L23: -15.7119 REMARK 3 S TENSOR REMARK 3 S11: 0.3821 S12: -0.5212 S13: 0.5483 REMARK 3 S21: 1.6311 S22: -0.1617 S23: 3.1784 REMARK 3 S31: -0.1214 S32: -0.1901 S33: -0.2204 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8964 -14.5771 24.5608 REMARK 3 T TENSOR REMARK 3 T11: -0.0091 T22: -0.0217 REMARK 3 T33: -0.0181 T12: -0.0092 REMARK 3 T13: 0.0134 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.6507 L22: 0.9948 REMARK 3 L33: 0.4725 L12: -0.2996 REMARK 3 L13: 0.0970 L23: -0.0718 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0533 S13: -0.0949 REMARK 3 S21: 0.0336 S22: -0.0133 S23: 0.1298 REMARK 3 S31: 0.0534 S32: -0.0507 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0607 -6.9210 42.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.0472 T22: 0.1185 REMARK 3 T33: -0.1553 T12: -0.0529 REMARK 3 T13: 0.0380 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 16.6860 L22: 16.9123 REMARK 3 L33: 7.3836 L12: -3.0795 REMARK 3 L13: 8.6355 L23: 3.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.1789 S12: -2.3522 S13: -0.6271 REMARK 3 S21: 1.6447 S22: 0.1997 S23: 0.6761 REMARK 3 S31: 0.7907 S32: -1.0418 S33: -0.3786 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2294 -6.6320 27.9533 REMARK 3 T TENSOR REMARK 3 T11: -0.0082 T22: 0.0072 REMARK 3 T33: -0.0095 T12: -0.0103 REMARK 3 T13: 0.0027 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5091 L22: 0.9082 REMARK 3 L33: 1.1633 L12: -0.0901 REMARK 3 L13: 0.1486 L23: 0.3434 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.0649 S13: 0.0302 REMARK 3 S21: 0.1503 S22: 0.0293 S23: -0.1401 REMARK 3 S31: 0.1141 S32: 0.1676 S33: -0.0661 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 146 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3633 1.5418 11.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0275 REMARK 3 T33: 0.0075 T12: -0.0011 REMARK 3 T13: 0.0177 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6794 L22: 1.3377 REMARK 3 L33: 0.9251 L12: -0.3241 REMARK 3 L13: -0.3132 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.0508 S13: 0.0430 REMARK 3 S21: -0.1315 S22: -0.0245 S23: -0.1369 REMARK 3 S31: -0.0164 S32: 0.0948 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 176 B 191 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4075 11.1449 8.2423 REMARK 3 T TENSOR REMARK 3 T11: -0.0143 T22: -0.0002 REMARK 3 T33: 0.0119 T12: -0.0274 REMARK 3 T13: 0.0192 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 2.4576 L22: 1.1996 REMARK 3 L33: 4.9405 L12: -0.3854 REMARK 3 L13: 1.2851 L23: -1.2713 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: -0.0633 S13: 0.1539 REMARK 3 S21: 0.0058 S22: -0.0253 S23: -0.1794 REMARK 3 S31: -0.4007 S32: 0.1584 S33: 0.1135 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 192 B 224 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0470 -6.0621 9.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.0026 REMARK 3 T33: -0.0096 T12: 0.0020 REMARK 3 T13: 0.0344 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6482 L22: 1.3754 REMARK 3 L33: 0.4066 L12: -0.2965 REMARK 3 L13: 0.0384 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0820 S13: -0.0204 REMARK 3 S21: -0.1333 S22: -0.0231 S23: -0.1428 REMARK 3 S31: 0.0316 S32: 0.0376 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 225 B 253 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2983 -3.2185 2.2360 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0104 REMARK 3 T33: -0.0425 T12: 0.0153 REMARK 3 T13: 0.0122 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.1026 L22: 1.2166 REMARK 3 L33: 0.4030 L12: -0.4791 REMARK 3 L13: 0.0467 L23: -0.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.1638 S13: -0.0678 REMARK 3 S21: -0.1928 S22: -0.0560 S23: 0.0169 REMARK 3 S31: 0.0754 S32: 0.0162 S33: -0.0066 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 254 B 283 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9552 5.9611 0.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.0207 REMARK 3 T33: -0.0418 T12: 0.0065 REMARK 3 T13: 0.0310 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.4435 L22: 1.1103 REMARK 3 L33: 0.8422 L12: -0.2364 REMARK 3 L13: 0.0484 L23: -0.1132 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.2229 S13: 0.0737 REMARK 3 S21: -0.1096 S22: -0.0939 S23: -0.1346 REMARK 3 S31: 0.0095 S32: 0.1021 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 284 B 313 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1320 -3.5951 12.9354 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0072 REMARK 3 T33: -0.0071 T12: 0.0054 REMARK 3 T13: 0.0144 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.8199 L22: 1.2072 REMARK 3 L33: 0.8045 L12: -0.2006 REMARK 3 L13: 0.2286 L23: -0.1085 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.0726 S13: 0.0101 REMARK 3 S21: -0.1233 S22: -0.0272 S23: 0.0151 REMARK 3 S31: 0.0189 S32: -0.0344 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 314 B 341 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3793 -16.9336 4.9594 REMARK 3 T TENSOR REMARK 3 T11: 0.0589 T22: 0.0028 REMARK 3 T33: -0.0045 T12: -0.0013 REMARK 3 T13: -0.0248 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.9099 L22: 3.3372 REMARK 3 L33: 4.9366 L12: -0.3794 REMARK 3 L13: 2.5316 L23: -0.8077 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.1799 S13: -0.0403 REMARK 3 S21: -0.5385 S22: 0.0241 S23: 0.3523 REMARK 3 S31: 0.1224 S32: -0.2202 S33: -0.0260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 3BJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91724, 0.97910, 0.91160 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.10, RESOLVE 2.10 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE BLU-ICE SOFTWARE PACKAGE WAS USED FOR DATA COLLECTION. REMARK 200 THE REFERENCE IS: MCPHILLIPS T.M., MCPHILLIPS S.E., CHIU H.J., REMARK 200 COHEN A.E., DEACON A.M., ELLIS P.J., GARMAN E., GONZALEZ A., REMARK 200 SAUTER N.K., PHIZACKERLEY R.P., SOLTIS S.M., KUHN P., BLU-ICE REMARK 200 AND THE DISTRIBUTED CONTROL SYSTEM: SOFTWARE FOR DATA REMARK 200 ACQUISITION AND INSTRUMENT CONTROL AT MACROMOLECULAR REMARK 200 CRYSTALLOGRAPHY BEAMLINES. J SYNCHROTRON RADIAT. 2002 NOV 1, REMARK 200 9(PT 6):401-6. EPUB 2002 NOV 1. PMID: 12409628. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 39% PEG 8000, 0.1 M TRIS-HCL PH 8.5, REMARK 280 0.1 M SODIUM PHOSPHATE MONOBASIC, 10 MM URIDINE, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.69350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 GLU A 13 REMARK 465 THR A 14 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 THR B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 GLU B 13 REMARK 465 THR B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 67 CD GLU A 67 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 66 -138.58 48.21 REMARK 500 ARG A 157 -82.52 -101.91 REMARK 500 ARG A 157 -83.06 -101.54 REMARK 500 TYR A 243 -102.78 -100.48 REMARK 500 LYS B 28 59.03 -99.58 REMARK 500 ARG B 66 -139.22 48.54 REMARK 500 LEU B 151 15.61 59.90 REMARK 500 ARG B 157 -85.74 -100.79 REMARK 500 SER B 240 33.53 -99.60 REMARK 500 TYR B 243 -100.61 -99.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE FORMATION OF A COMPLEX WITH URACIL AND REMARK 600 RIBOSE-1-PHOSPHATE RESULTS FROM COCRYSTALLIZATION REMARK 600 WITH URIDINE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 87 O REMARK 620 2 ASP A 90 OD1 95.9 REMARK 620 3 ASP A 90 OD2 139.1 48.2 REMARK 620 4 ASN A 91 OD1 74.0 77.8 78.8 REMARK 620 5 MET B 87 O 129.2 124.3 76.7 84.8 REMARK 620 6 ASP B 90 OD1 122.5 83.0 77.9 156.1 94.6 REMARK 620 7 ASP B 90 OD2 74.3 77.7 108.8 137.2 137.9 49.1 REMARK 620 8 ASN B 91 OD1 84.0 155.0 136.8 125.5 71.7 76.2 78.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TBRU017883AAA RELATED DB: TARGETDB DBREF 3BJE A 1 341 UNP Q57VZ2 Q57VZ2_9TRYP 1 341 DBREF 3BJE B 1 341 UNP Q57VZ2 Q57VZ2_9TRYP 1 341 SEQADV 3BJE MET A -7 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE ALA A -6 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS A -5 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS A -4 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS A -3 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS A -2 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS A -1 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS A 0 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE MET B -7 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE ALA B -6 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS B -5 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS B -4 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS B -3 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS B -2 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS B -1 UNP Q57VZ2 EXPRESSION TAG SEQADV 3BJE HIS B 0 UNP Q57VZ2 EXPRESSION TAG SEQRES 1 A 349 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ALA SER ALA SEQRES 2 A 349 ASN GLY SER THR LYS GLY SER GLU THR ASP LEU PRO ILE SEQRES 3 A 349 GLY LYS ASP GLY THR THR LEU HIS LEU LYS CYS LYS SER SEQRES 4 A 349 ASP GLU LEU ALA ASP ARG ILE ILE PHE VAL GLY ASP PRO SEQRES 5 A 349 GLY ARG VAL ASP VAL ILE SER GLY TYR PHE ASP LYS ASP SEQRES 6 A 349 SER ILE ARG ALA SER ARG ASP HIS ARG GLU ILE ARG PHE SEQRES 7 A 349 ALA THR GLY THR TYR LYS GLY THR PRO VAL THR VAL ILE SEQRES 8 A 349 SER THR GLY MET GLY VAL ASP ASN ILE GLU ILE VAL LEU SEQRES 9 A 349 ASN GLU ILE HIS ALA LEU LYS GLU TYR ASP MET GLU ARG SEQRES 10 A 349 GLY GLN TRP ARG HIS ARG LYS GLY ASP ALA ASP ALA PRO SEQRES 11 A 349 SER ALA GLY PRO PHE PHE ASP PRO SER THR MET LYS ILE SEQRES 12 A 349 ILE ARG LEU GLY THR CYS GLY SER PRO ALA GLU SER VAL SEQRES 13 A 349 PRO PRO LEU ALA LEU ALA VAL THR ARG HIS ALA ILE GLY SEQRES 14 A 349 MET ASP ASN THR SER LEU TYR TYR SER ALA GLY THR ARG SEQRES 15 A 349 GLU THR SER LYS ASP GLN GLN GLU ILE ARG ARG ILE VAL SEQRES 16 A 349 ARG GLU GLN THR GLY LEU ARG ALA ILE ASP ILE TYR THR SEQRES 17 A 349 SER MET ALA HIS PRO ASN ILE THR LYS SER ILE CYS ALA SEQRES 18 A 349 ALA CYS ASP ALA HIS ASN ALA ALA THR GLY SER GLU ALA SEQRES 19 A 349 ASP LYS GLN GLN TYR VAL ILE GLY THR THR ALA THR ALA SEQRES 20 A 349 SER GLY PHE TYR GLY CYS GLN GLY ARG ARG VAL GLY ARG SEQRES 21 A 349 PHE MET LYS HIS LEU THR VAL PRO ASN MET VAL GLU GLU SEQRES 22 A 349 LEU GLY SER LEU LYS PHE ASN LEU SER ASN GLY VAL GLU SEQRES 23 A 349 VAL VAL THR ASN ILE GLU MET GLU THR SER ALA ILE CYS SEQRES 24 A 349 TYR LEU SER ASP MET LEU GLY TYR GLN ALA GLY ALA ALA SEQRES 25 A 349 CYS VAL VAL VAL SER LYS ARG VAL GLY GLU LYS LYS MET SEQRES 26 A 349 PHE LEU GLY ASP GLN LEU ASP ALA ALA MET LYS ARG CYS SEQRES 27 A 349 ILE LYS ILE ILE LEU GLU ALA LEU VAL SER ALA SEQRES 1 B 349 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ALA SER ALA SEQRES 2 B 349 ASN GLY SER THR LYS GLY SER GLU THR ASP LEU PRO ILE SEQRES 3 B 349 GLY LYS ASP GLY THR THR LEU HIS LEU LYS CYS LYS SER SEQRES 4 B 349 ASP GLU LEU ALA ASP ARG ILE ILE PHE VAL GLY ASP PRO SEQRES 5 B 349 GLY ARG VAL ASP VAL ILE SER GLY TYR PHE ASP LYS ASP SEQRES 6 B 349 SER ILE ARG ALA SER ARG ASP HIS ARG GLU ILE ARG PHE SEQRES 7 B 349 ALA THR GLY THR TYR LYS GLY THR PRO VAL THR VAL ILE SEQRES 8 B 349 SER THR GLY MET GLY VAL ASP ASN ILE GLU ILE VAL LEU SEQRES 9 B 349 ASN GLU ILE HIS ALA LEU LYS GLU TYR ASP MET GLU ARG SEQRES 10 B 349 GLY GLN TRP ARG HIS ARG LYS GLY ASP ALA ASP ALA PRO SEQRES 11 B 349 SER ALA GLY PRO PHE PHE ASP PRO SER THR MET LYS ILE SEQRES 12 B 349 ILE ARG LEU GLY THR CYS GLY SER PRO ALA GLU SER VAL SEQRES 13 B 349 PRO PRO LEU ALA LEU ALA VAL THR ARG HIS ALA ILE GLY SEQRES 14 B 349 MET ASP ASN THR SER LEU TYR TYR SER ALA GLY THR ARG SEQRES 15 B 349 GLU THR SER LYS ASP GLN GLN GLU ILE ARG ARG ILE VAL SEQRES 16 B 349 ARG GLU GLN THR GLY LEU ARG ALA ILE ASP ILE TYR THR SEQRES 17 B 349 SER MET ALA HIS PRO ASN ILE THR LYS SER ILE CYS ALA SEQRES 18 B 349 ALA CYS ASP ALA HIS ASN ALA ALA THR GLY SER GLU ALA SEQRES 19 B 349 ASP LYS GLN GLN TYR VAL ILE GLY THR THR ALA THR ALA SEQRES 20 B 349 SER GLY PHE TYR GLY CYS GLN GLY ARG ARG VAL GLY ARG SEQRES 21 B 349 PHE MET LYS HIS LEU THR VAL PRO ASN MET VAL GLU GLU SEQRES 22 B 349 LEU GLY SER LEU LYS PHE ASN LEU SER ASN GLY VAL GLU SEQRES 23 B 349 VAL VAL THR ASN ILE GLU MET GLU THR SER ALA ILE CYS SEQRES 24 B 349 TYR LEU SER ASP MET LEU GLY TYR GLN ALA GLY ALA ALA SEQRES 25 B 349 CYS VAL VAL VAL SER LYS ARG VAL GLY GLU LYS LYS MET SEQRES 26 B 349 PHE LEU GLY ASP GLN LEU ASP ALA ALA MET LYS ARG CYS SEQRES 27 B 349 ILE LYS ILE ILE LEU GLU ALA LEU VAL SER ALA HET R1P A 401 14 HET URA A 501 8 HET R1P B 401 14 HET URA B 501 8 HET CA B 402 1 HETNAM R1P 1-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM URA URACIL HETNAM CA CALCIUM ION HETSYN R1P RIBOSE-1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 2 R1P PHOSPHONO-D-RIBOSE; 1-O-PHOSPHONO-RIBOSE FORMUL 3 R1P 2(C5 H11 O8 P) FORMUL 4 URA 2(C4 H4 N2 O2) FORMUL 7 CA CA 2+ FORMUL 8 HOH *501(H2 O) HELIX 1 1 LYS A 30 LEU A 34 5 5 HELIX 2 2 GLY A 45 GLY A 52 1 8 HELIX 3 3 GLY A 88 GLU A 104 1 17 HELIX 4 4 ASP A 129 THR A 132 5 4 HELIX 5 5 ASN A 164 SER A 170 5 7 HELIX 6 6 SER A 177 THR A 191 1 15 HELIX 7 7 GLY A 192 ILE A 196 5 5 HELIX 8 8 HIS A 204 ALA A 221 1 18 HELIX 9 9 SER A 224 LYS A 228 5 5 HELIX 10 10 TYR A 243 GLY A 247 5 5 HELIX 11 11 VAL A 250 LEU A 257 5 8 HELIX 12 12 ASN A 261 LEU A 269 1 9 HELIX 13 13 GLU A 286 GLY A 298 1 13 HELIX 14 14 GLY A 320 ALA A 341 1 22 HELIX 15 15 LYS B 30 LEU B 34 5 5 HELIX 16 16 GLY B 45 GLY B 52 1 8 HELIX 17 17 GLY B 88 GLU B 104 1 17 HELIX 18 18 ASP B 129 THR B 132 5 4 HELIX 19 19 ASN B 164 SER B 170 5 7 HELIX 20 20 SER B 177 THR B 191 1 15 HELIX 21 21 GLY B 192 ILE B 196 5 5 HELIX 22 22 HIS B 204 ALA B 221 1 18 HELIX 23 23 SER B 224 LYS B 228 5 5 HELIX 24 24 TYR B 243 GLY B 247 5 5 HELIX 25 25 VAL B 250 LEU B 257 5 8 HELIX 26 26 ASN B 261 SER B 268 1 8 HELIX 27 27 GLU B 286 GLY B 298 1 13 HELIX 28 28 GLY B 320 ALA B 341 1 22 SHEET 1 A 8 TYR A 199 MET A 202 0 SHEET 2 A 8 LEU A 153 GLY A 161 -1 N GLY A 161 O TYR A 199 SHEET 3 A 8 TYR A 231 THR A 238 1 O VAL A 232 N VAL A 155 SHEET 4 A 8 VAL A 280 GLU A 284 1 O ASN A 282 N ALA A 237 SHEET 5 A 8 LYS A 134 SER A 143 -1 N GLY A 142 O ILE A 283 SHEET 6 A 8 ARG A 37 VAL A 41 1 N ILE A 38 O LYS A 134 SHEET 7 A 8 ILE A 68 TYR A 75 0 SHEET 8 A 8 ALA A 61 HIS A 65 -1 N ALA A 61 O THR A 72 SHEET 1 B 8 TYR A 199 MET A 202 0 SHEET 2 B 8 LEU A 153 GLY A 161 -1 N GLY A 161 O TYR A 199 SHEET 3 B 8 GLN A 300 LYS A 310 -1 O CYS A 305 N ALA A 154 SHEET 4 B 8 LYS A 134 SER A 143 1 N GLY A 139 O VAL A 306 SHEET 5 B 8 ARG A 37 VAL A 41 1 N ILE A 38 O LYS A 134 SHEET 6 B 8 THR A 78 SER A 84 1 O ILE A 83 N ILE A 39 SHEET 7 B 8 ILE A 68 TYR A 75 -1 N ARG A 69 O SER A 84 SHEET 8 B 8 ALA A 61 HIS A 65 -1 N ALA A 61 O THR A 72 SHEET 1 C 6 LYS A 316 MET A 317 0 SHEET 2 C 6 GLN A 300 LYS A 310 -1 N LYS A 310 O LYS A 316 SHEET 3 C 6 LYS A 134 SER A 143 1 N GLY A 139 O VAL A 306 SHEET 4 C 6 ARG A 37 VAL A 41 1 N ILE A 38 O LYS A 134 SHEET 5 C 6 ILE A 68 TYR A 75 0 SHEET 6 C 6 ALA A 61 HIS A 65 -1 N ALA A 61 O THR A 72 SHEET 1 D 2 TYR A 105 ASP A 106 0 SHEET 2 D 2 GLN A 111 TRP A 112 -1 O GLN A 111 N ASP A 106 SHEET 1 E 2 PHE A 271 LEU A 273 0 SHEET 2 E 2 GLY A 276 GLU A 278 -1 O GLU A 278 N PHE A 271 SHEET 1 F 8 TYR B 199 MET B 202 0 SHEET 2 F 8 LEU B 153 GLY B 161 -1 N GLY B 161 O TYR B 199 SHEET 3 F 8 TYR B 231 THR B 238 1 O VAL B 232 N VAL B 155 SHEET 4 F 8 VAL B 280 GLU B 284 1 O ASN B 282 N ALA B 237 SHEET 5 F 8 LYS B 134 SER B 143 -1 N GLY B 142 O ILE B 283 SHEET 6 F 8 ARG B 37 VAL B 41 1 N ILE B 38 O LYS B 134 SHEET 7 F 8 ILE B 68 TYR B 75 0 SHEET 8 F 8 ALA B 61 HIS B 65 -1 N ALA B 61 O THR B 72 SHEET 1 G 8 TYR B 199 MET B 202 0 SHEET 2 G 8 LEU B 153 GLY B 161 -1 N GLY B 161 O TYR B 199 SHEET 3 G 8 GLN B 300 LYS B 310 -1 O CYS B 305 N ALA B 154 SHEET 4 G 8 LYS B 134 SER B 143 1 N GLY B 139 O VAL B 306 SHEET 5 G 8 ARG B 37 VAL B 41 1 N ILE B 38 O LYS B 134 SHEET 6 G 8 THR B 78 SER B 84 1 O ILE B 83 N ILE B 39 SHEET 7 G 8 ILE B 68 TYR B 75 -1 N ARG B 69 O SER B 84 SHEET 8 G 8 ALA B 61 HIS B 65 -1 N ALA B 61 O THR B 72 SHEET 1 H 6 LYS B 316 MET B 317 0 SHEET 2 H 6 GLN B 300 LYS B 310 -1 N LYS B 310 O LYS B 316 SHEET 3 H 6 LYS B 134 SER B 143 1 N GLY B 139 O VAL B 306 SHEET 4 H 6 ARG B 37 VAL B 41 1 N ILE B 38 O LYS B 134 SHEET 5 H 6 ILE B 68 TYR B 75 0 SHEET 6 H 6 ALA B 61 HIS B 65 -1 N ALA B 61 O THR B 72 SHEET 1 I 2 TYR B 105 ASP B 106 0 SHEET 2 I 2 GLN B 111 TRP B 112 -1 O GLN B 111 N ASP B 106 SHEET 1 J 2 PHE B 271 LEU B 273 0 SHEET 2 J 2 GLY B 276 GLU B 278 -1 O GLU B 278 N PHE B 271 LINK O MET A 87 CA CA B 402 1555 1555 2.39 LINK OD1 ASP A 90 CA CA B 402 1555 1555 2.43 LINK OD2 ASP A 90 CA CA B 402 1555 1555 2.78 LINK OD1 ASN A 91 CA CA B 402 1555 1555 2.43 LINK O MET B 87 CA CA B 402 1555 1555 2.36 LINK OD1 ASP B 90 CA CA B 402 1555 1555 2.44 LINK OD2 ASP B 90 CA CA B 402 1555 1555 2.73 LINK OD1 ASN B 91 CA CA B 402 1555 1555 2.43 CISPEP 1 GLY A 125 PRO A 126 0 1.48 CISPEP 2 GLY B 125 PRO B 126 0 1.87 CRYST1 63.015 95.387 63.483 90.00 105.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015869 0.000000 0.004523 0.00000 SCALE2 0.000000 0.010484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016380 0.00000