data_3BJG # _entry.id 3BJG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BJG RCSB RCSB045595 WWPDB D_1000045595 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2019-09-04 _pdbx_database_PDB_obs_spr.pdb_id 3SRP _pdbx_database_PDB_obs_spr.replace_pdb_id 3BJG _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3BJG _pdbx_database_status.recvd_initial_deposition_date 2007-12-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Legler, P.M.' 1 'Millard, C.B.' 2 # _citation.id primary _citation.title 'Structure of RiVax: a recombinant ricin vaccine.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 67 _citation.page_first 826 _citation.page_last 830 _citation.year 2011 _citation.journal_id_ASTM ABCRE6 _citation.country US _citation.journal_id_ISSN 1399-0047 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21904036 _citation.pdbx_database_id_DOI 10.1107/S0907444911026771 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Legler, P.M.' 1 ? primary 'Brey, R.N.' 2 ? primary 'Smallshaw, J.E.' 3 ? primary 'Vitetta, E.S.' 4 ? primary 'Millard, C.B.' 5 ? # _cell.entry_id 3BJG _cell.length_a 66.560 _cell.length_b 66.560 _cell.length_c 136.720 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BJG _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ricin A chain (rRNA N-glycosidase)' 29947.801 1 3.2.2.22 'V76M, Y80A' ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AIFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDMTNA AVVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGT QLPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSK FSVYDVSILIPIIALMVYRCAPPPSSQF ; _entity_poly.pdbx_seq_one_letter_code_can ;AIFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDMTNA AVVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGT QLPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSK FSVYDVSILIPIIALMVYRCAPPPSSQF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ILE n 1 3 PHE n 1 4 PRO n 1 5 LYS n 1 6 GLN n 1 7 TYR n 1 8 PRO n 1 9 ILE n 1 10 ILE n 1 11 ASN n 1 12 PHE n 1 13 THR n 1 14 THR n 1 15 ALA n 1 16 GLY n 1 17 ALA n 1 18 THR n 1 19 VAL n 1 20 GLN n 1 21 SER n 1 22 TYR n 1 23 THR n 1 24 ASN n 1 25 PHE n 1 26 ILE n 1 27 ARG n 1 28 ALA n 1 29 VAL n 1 30 ARG n 1 31 GLY n 1 32 ARG n 1 33 LEU n 1 34 THR n 1 35 THR n 1 36 GLY n 1 37 ALA n 1 38 ASP n 1 39 VAL n 1 40 ARG n 1 41 HIS n 1 42 GLU n 1 43 ILE n 1 44 PRO n 1 45 VAL n 1 46 LEU n 1 47 PRO n 1 48 ASN n 1 49 ARG n 1 50 VAL n 1 51 GLY n 1 52 LEU n 1 53 PRO n 1 54 ILE n 1 55 ASN n 1 56 GLN n 1 57 ARG n 1 58 PHE n 1 59 ILE n 1 60 LEU n 1 61 VAL n 1 62 GLU n 1 63 LEU n 1 64 SER n 1 65 ASN n 1 66 HIS n 1 67 ALA n 1 68 GLU n 1 69 LEU n 1 70 SER n 1 71 VAL n 1 72 THR n 1 73 LEU n 1 74 ALA n 1 75 LEU n 1 76 ASP n 1 77 MET n 1 78 THR n 1 79 ASN n 1 80 ALA n 1 81 ALA n 1 82 VAL n 1 83 VAL n 1 84 GLY n 1 85 TYR n 1 86 ARG n 1 87 ALA n 1 88 GLY n 1 89 ASN n 1 90 SER n 1 91 ALA n 1 92 TYR n 1 93 PHE n 1 94 PHE n 1 95 HIS n 1 96 PRO n 1 97 ASP n 1 98 ASN n 1 99 GLN n 1 100 GLU n 1 101 ASP n 1 102 ALA n 1 103 GLU n 1 104 ALA n 1 105 ILE n 1 106 THR n 1 107 HIS n 1 108 LEU n 1 109 PHE n 1 110 THR n 1 111 ASP n 1 112 VAL n 1 113 GLN n 1 114 ASN n 1 115 ARG n 1 116 TYR n 1 117 THR n 1 118 PHE n 1 119 ALA n 1 120 PHE n 1 121 GLY n 1 122 GLY n 1 123 ASN n 1 124 TYR n 1 125 ASP n 1 126 ARG n 1 127 LEU n 1 128 GLU n 1 129 GLN n 1 130 LEU n 1 131 ALA n 1 132 GLY n 1 133 ASN n 1 134 LEU n 1 135 ARG n 1 136 GLU n 1 137 ASN n 1 138 ILE n 1 139 GLU n 1 140 LEU n 1 141 GLY n 1 142 ASN n 1 143 GLY n 1 144 PRO n 1 145 LEU n 1 146 GLU n 1 147 GLU n 1 148 ALA n 1 149 ILE n 1 150 SER n 1 151 ALA n 1 152 LEU n 1 153 TYR n 1 154 TYR n 1 155 TYR n 1 156 SER n 1 157 THR n 1 158 GLY n 1 159 GLY n 1 160 THR n 1 161 GLN n 1 162 LEU n 1 163 PRO n 1 164 THR n 1 165 LEU n 1 166 ALA n 1 167 ARG n 1 168 SER n 1 169 PHE n 1 170 ILE n 1 171 ILE n 1 172 CYS n 1 173 ILE n 1 174 GLN n 1 175 MET n 1 176 ILE n 1 177 SER n 1 178 GLU n 1 179 ALA n 1 180 ALA n 1 181 ARG n 1 182 PHE n 1 183 GLN n 1 184 TYR n 1 185 ILE n 1 186 GLU n 1 187 GLY n 1 188 GLU n 1 189 MET n 1 190 ARG n 1 191 THR n 1 192 ARG n 1 193 ILE n 1 194 ARG n 1 195 TYR n 1 196 ASN n 1 197 ARG n 1 198 ARG n 1 199 SER n 1 200 ALA n 1 201 PRO n 1 202 ASP n 1 203 PRO n 1 204 SER n 1 205 VAL n 1 206 ILE n 1 207 THR n 1 208 LEU n 1 209 GLU n 1 210 ASN n 1 211 SER n 1 212 TRP n 1 213 GLY n 1 214 ARG n 1 215 LEU n 1 216 SER n 1 217 THR n 1 218 ALA n 1 219 ILE n 1 220 GLN n 1 221 GLU n 1 222 SER n 1 223 ASN n 1 224 GLN n 1 225 GLY n 1 226 ALA n 1 227 PHE n 1 228 ALA n 1 229 SER n 1 230 PRO n 1 231 ILE n 1 232 GLN n 1 233 LEU n 1 234 GLN n 1 235 ARG n 1 236 ARG n 1 237 ASN n 1 238 GLY n 1 239 SER n 1 240 LYS n 1 241 PHE n 1 242 SER n 1 243 VAL n 1 244 TYR n 1 245 ASP n 1 246 VAL n 1 247 SER n 1 248 ILE n 1 249 LEU n 1 250 ILE n 1 251 PRO n 1 252 ILE n 1 253 ILE n 1 254 ALA n 1 255 LEU n 1 256 MET n 1 257 VAL n 1 258 TYR n 1 259 ARG n 1 260 CYS n 1 261 ALA n 1 262 PRO n 1 263 PRO n 1 264 PRO n 1 265 SER n 1 266 SER n 1 267 GLN n 1 268 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Castor bean' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ricinus communis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3988 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RICI_RICCO _struct_ref.pdbx_db_accession P02879 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAY VVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQ LPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKF SVYDVSILIPIIALMVYRCAPPPSSQF ; _struct_ref.pdbx_align_begin 36 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BJG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 268 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02879 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 302 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 267 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BJG ALA A 1 ? UNP P02879 ? ? 'EXPRESSION TAG' 0 1 1 3BJG MET A 77 ? UNP P02879 VAL 111 ENGINEERED 76 2 1 3BJG ALA A 81 ? UNP P02879 TYR 115 ENGINEERED 80 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BJG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_details '30% Ammonium Sulfate, 50mM Na Acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2007-03-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3BJG _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 68.36 _reflns.d_resolution_high 2.14 _reflns.number_obs 17463 _reflns.number_all 17731 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 21.11 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.35 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.14 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 87.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.085 _reflns_shell.meanI_over_sigI_obs 4.39 _reflns_shell.pdbx_redundancy 6.13 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BJG _refine.ls_number_reflns_obs 16508 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 59.87 _refine.ls_d_res_high 2.14 _refine.ls_percent_reflns_obs 98.42 _refine.ls_R_factor_obs 0.20827 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20573 _refine.ls_R_factor_R_free 0.25799 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 878 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.922 _refine.correlation_coeff_Fo_to_Fc_free 0.876 _refine.B_iso_mean 15.907 _refine.aniso_B[1][1] -0.03 _refine.aniso_B[2][2] -0.03 _refine.aniso_B[3][3] 0.06 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.230 _refine.pdbx_overall_ESU_R_Free 0.202 _refine.overall_SU_ML 0.127 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.711 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2052 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 2110 _refine_hist.d_res_high 2.14 _refine_hist.d_res_low 59.87 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 2100 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.803 1.953 ? 2858 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.881 5.000 ? 260 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.428 23.077 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.518 15.000 ? 330 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.354 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.114 0.200 ? 319 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1635 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 1182 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.317 0.200 ? 1515 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.165 0.200 ? 161 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.271 0.200 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.152 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.089 1.500 ? 1330 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.734 2.000 ? 2104 'X-RAY DIFFRACTION' ? r_scbond_it 3.065 3.000 ? 858 'X-RAY DIFFRACTION' ? r_scangle_it 4.579 4.500 ? 754 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.140 _refine_ls_shell.d_res_low 2.196 _refine_ls_shell.number_reflns_R_work 1014 _refine_ls_shell.R_factor_R_work 0.216 _refine_ls_shell.percent_reflns_obs 85.32 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BJG _struct.title 'Structure of Rivax: A Human Ricin Vaccine' _struct.pdbx_descriptor 'Ricin A chain (rRNA N-glycosidase) (E.C.3.2.2.22)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BJG _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Ricin A Chain, toxin, Ribosome inactivating protein, vaccine, Glycoprotein, Hydrolase, Lectin, Plant defense, Protein synthesis inhibitor ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 18 ? LEU A 33 ? THR A 17 LEU A 32 1 ? 16 HELX_P HELX_P2 2 PRO A 53 ? GLN A 56 ? PRO A 52 GLN A 55 5 ? 4 HELX_P HELX_P3 3 ASN A 98 ? THR A 106 ? ASN A 97 THR A 105 1 ? 9 HELX_P HELX_P4 4 ASN A 123 ? GLY A 132 ? ASN A 122 GLY A 131 1 ? 10 HELX_P HELX_P5 5 LEU A 134 ? ILE A 138 ? LEU A 133 ILE A 137 5 ? 5 HELX_P HELX_P6 6 GLY A 141 ? SER A 156 ? GLY A 140 SER A 155 1 ? 16 HELX_P HELX_P7 7 GLN A 161 ? ILE A 176 ? GLN A 160 ILE A 175 1 ? 16 HELX_P HELX_P8 8 ILE A 176 ? PHE A 182 ? ILE A 175 PHE A 181 1 ? 7 HELX_P HELX_P9 9 PHE A 182 ? TYR A 195 ? PHE A 181 TYR A 194 1 ? 14 HELX_P HELX_P10 10 ASP A 202 ? SER A 211 ? ASP A 201 SER A 210 1 ? 10 HELX_P HELX_P11 11 SER A 211 ? GLU A 221 ? SER A 210 GLU A 220 1 ? 11 HELX_P HELX_P12 12 SER A 247 ? ILE A 250 ? SER A 246 ILE A 249 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 9 ? THR A 13 ? ILE A 8 THR A 12 A 2 PHE A 58 ? SER A 64 ? PHE A 57 SER A 63 A 3 SER A 70 ? ASP A 76 ? SER A 69 ASP A 75 A 4 VAL A 82 ? ALA A 87 ? VAL A 81 ALA A 86 A 5 SER A 90 ? PHE A 93 ? SER A 89 PHE A 92 A 6 ASN A 114 ? THR A 117 ? ASN A 113 THR A 116 B 1 VAL A 39 ? ARG A 40 ? VAL A 38 ARG A 39 B 2 ILE A 43 ? PRO A 44 ? ILE A 42 PRO A 43 C 1 ALA A 226 ? GLN A 234 ? ALA A 225 GLN A 233 C 2 LYS A 240 ? ASP A 245 ? LYS A 239 ASP A 244 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 10 ? N ILE A 9 O GLU A 62 ? O GLU A 61 A 2 3 N LEU A 63 ? N LEU A 62 O VAL A 71 ? O VAL A 70 A 3 4 N ALA A 74 ? N ALA A 73 O VAL A 83 ? O VAL A 82 A 4 5 N ALA A 87 ? N ALA A 86 O SER A 90 ? O SER A 89 A 5 6 N PHE A 93 ? N PHE A 92 O TYR A 116 ? O TYR A 115 B 1 2 N ARG A 40 ? N ARG A 39 O ILE A 43 ? O ILE A 42 C 1 2 N LEU A 233 ? N LEU A 232 O PHE A 241 ? O PHE A 240 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 THR A 18 ? THR A 17 . ? 1_555 ? 2 AC1 3 GLN A 20 ? GLN A 19 . ? 1_555 ? 3 AC1 3 HIS A 66 ? HIS A 65 . ? 8_665 ? # _database_PDB_matrix.entry_id 3BJG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BJG _atom_sites.fract_transf_matrix[1][1] 0.015024 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007314 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 ? ? ? A . n A 1 2 ILE 2 1 ? ? ? A . n A 1 3 PHE 3 2 ? ? ? A . n A 1 4 PRO 4 3 ? ? ? A . n A 1 5 LYS 5 4 ? ? ? A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 TYR 7 6 6 TYR TYR A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 ASN 11 10 10 ASN ASN A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 GLY 31 30 30 GLY GLY A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 HIS 41 40 40 HIS HIS A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 ASN 48 47 47 ASN ASN A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 PRO 53 52 52 PRO PRO A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 ASN 55 54 54 ASN ASN A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 ARG 57 56 56 ARG ARG A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 ASN 65 64 64 ASN ASN A . n A 1 66 HIS 66 65 65 HIS HIS A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 SER 70 69 69 SER SER A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 MET 77 76 76 MET MET A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 ARG 86 85 85 ARG ARG A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 ASN 89 88 88 ASN ASN A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 PHE 93 92 92 PHE PHE A . n A 1 94 PHE 94 93 93 PHE PHE A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ASN 98 97 97 ASN ASN A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 HIS 107 106 106 HIS HIS A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 PHE 109 108 108 PHE PHE A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 GLN 113 112 112 GLN GLN A . n A 1 114 ASN 114 113 113 ASN ASN A . n A 1 115 ARG 115 114 114 ARG ARG A . n A 1 116 TYR 116 115 115 TYR TYR A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 PHE 118 117 117 PHE PHE A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ASN 123 122 122 ASN ASN A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 ASP 125 124 124 ASP ASP A . n A 1 126 ARG 126 125 125 ARG ARG A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 GLN 129 128 128 GLN GLN A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 GLY 132 131 131 GLY GLY A . n A 1 133 ASN 133 132 132 ASN ASN A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 GLU 136 135 135 GLU GLU A . n A 1 137 ASN 137 136 136 ASN ASN A . n A 1 138 ILE 138 137 137 ILE ILE A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 ASN 142 141 141 ASN ASN A . n A 1 143 GLY 143 142 142 GLY GLY A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 GLU 146 145 145 GLU GLU A . n A 1 147 GLU 147 146 146 GLU GLU A . n A 1 148 ALA 148 147 147 ALA ALA A . n A 1 149 ILE 149 148 148 ILE ILE A . n A 1 150 SER 150 149 149 SER SER A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 TYR 153 152 152 TYR TYR A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 TYR 155 154 154 TYR TYR A . n A 1 156 SER 156 155 155 SER SER A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 GLY 158 157 157 GLY GLY A . n A 1 159 GLY 159 158 158 GLY GLY A . n A 1 160 THR 160 159 159 THR THR A . n A 1 161 GLN 161 160 160 GLN GLN A . n A 1 162 LEU 162 161 161 LEU LEU A . n A 1 163 PRO 163 162 162 PRO PRO A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 ALA 166 165 165 ALA ALA A . n A 1 167 ARG 167 166 166 ARG ARG A . n A 1 168 SER 168 167 167 SER SER A . n A 1 169 PHE 169 168 168 PHE PHE A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 CYS 172 171 171 CYS CYS A . n A 1 173 ILE 173 172 172 ILE ILE A . n A 1 174 GLN 174 173 173 GLN GLN A . n A 1 175 MET 175 174 174 MET MET A . n A 1 176 ILE 176 175 175 ILE ILE A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 ALA 179 178 178 ALA ALA A . n A 1 180 ALA 180 179 179 ALA ALA A . n A 1 181 ARG 181 180 180 ARG ARG A . n A 1 182 PHE 182 181 181 PHE PHE A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 TYR 184 183 183 TYR TYR A . n A 1 185 ILE 185 184 184 ILE ILE A . n A 1 186 GLU 186 185 185 GLU GLU A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 GLU 188 187 187 GLU GLU A . n A 1 189 MET 189 188 188 MET MET A . n A 1 190 ARG 190 189 189 ARG ARG A . n A 1 191 THR 191 190 190 THR THR A . n A 1 192 ARG 192 191 191 ARG ARG A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 ARG 194 193 193 ARG ARG A . n A 1 195 TYR 195 194 194 TYR TYR A . n A 1 196 ASN 196 195 195 ASN ASN A . n A 1 197 ARG 197 196 196 ARG ARG A . n A 1 198 ARG 198 197 197 ARG ARG A . n A 1 199 SER 199 198 198 SER SER A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 ASP 202 201 201 ASP ASP A . n A 1 203 PRO 203 202 202 PRO PRO A . n A 1 204 SER 204 203 203 SER SER A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 ILE 206 205 205 ILE ILE A . n A 1 207 THR 207 206 206 THR THR A . n A 1 208 LEU 208 207 207 LEU LEU A . n A 1 209 GLU 209 208 208 GLU GLU A . n A 1 210 ASN 210 209 209 ASN ASN A . n A 1 211 SER 211 210 210 SER SER A . n A 1 212 TRP 212 211 211 TRP TRP A . n A 1 213 GLY 213 212 212 GLY GLY A . n A 1 214 ARG 214 213 213 ARG ARG A . n A 1 215 LEU 215 214 214 LEU LEU A . n A 1 216 SER 216 215 215 SER SER A . n A 1 217 THR 217 216 216 THR THR A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ILE 219 218 218 ILE ILE A . n A 1 220 GLN 220 219 219 GLN GLN A . n A 1 221 GLU 221 220 220 GLU GLU A . n A 1 222 SER 222 221 221 SER SER A . n A 1 223 ASN 223 222 222 ASN ASN A . n A 1 224 GLN 224 223 223 GLN GLN A . n A 1 225 GLY 225 224 224 GLY GLY A . n A 1 226 ALA 226 225 225 ALA ALA A . n A 1 227 PHE 227 226 226 PHE PHE A . n A 1 228 ALA 228 227 227 ALA ALA A . n A 1 229 SER 229 228 228 SER SER A . n A 1 230 PRO 230 229 229 PRO PRO A . n A 1 231 ILE 231 230 230 ILE ILE A . n A 1 232 GLN 232 231 231 GLN GLN A . n A 1 233 LEU 233 232 232 LEU LEU A . n A 1 234 GLN 234 233 233 GLN GLN A . n A 1 235 ARG 235 234 234 ARG ARG A . n A 1 236 ARG 236 235 235 ARG ARG A . n A 1 237 ASN 237 236 236 ASN ASN A . n A 1 238 GLY 238 237 237 GLY GLY A . n A 1 239 SER 239 238 238 SER SER A . n A 1 240 LYS 240 239 239 LYS LYS A . n A 1 241 PHE 241 240 240 PHE PHE A . n A 1 242 SER 242 241 241 SER SER A . n A 1 243 VAL 243 242 242 VAL VAL A . n A 1 244 TYR 244 243 243 TYR TYR A . n A 1 245 ASP 245 244 244 ASP ASP A . n A 1 246 VAL 246 245 245 VAL VAL A . n A 1 247 SER 247 246 246 SER SER A . n A 1 248 ILE 248 247 247 ILE ILE A . n A 1 249 LEU 249 248 248 LEU LEU A . n A 1 250 ILE 250 249 249 ILE ILE A . n A 1 251 PRO 251 250 250 PRO PRO A . n A 1 252 ILE 252 251 251 ILE ILE A . n A 1 253 ILE 253 252 252 ILE ILE A . n A 1 254 ALA 254 253 253 ALA ALA A . n A 1 255 LEU 255 254 254 LEU LEU A . n A 1 256 MET 256 255 255 MET MET A . n A 1 257 VAL 257 256 256 VAL VAL A . n A 1 258 TYR 258 257 257 TYR TYR A . n A 1 259 ARG 259 258 258 ARG ARG A . n A 1 260 CYS 260 259 259 CYS CYS A . n A 1 261 ALA 261 260 260 ALA ALA A . n A 1 262 PRO 262 261 261 PRO PRO A . n A 1 263 PRO 263 262 262 PRO PRO A . n A 1 264 PRO 264 263 263 PRO PRO A . n A 1 265 SER 265 264 264 SER SER A . n A 1 266 SER 266 265 265 SER SER A . n A 1 267 GLN 267 266 ? ? ? A . n A 1 268 PHE 268 267 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 3 HOH 1 267 267 HOH HOH A . C 3 HOH 2 268 268 HOH HOH A . C 3 HOH 3 269 269 HOH HOH A . C 3 HOH 4 270 270 HOH HOH A . C 3 HOH 5 271 271 HOH HOH A . C 3 HOH 6 272 272 HOH HOH A . C 3 HOH 7 273 273 HOH HOH A . C 3 HOH 8 274 274 HOH HOH A . C 3 HOH 9 275 275 HOH HOH A . C 3 HOH 10 276 276 HOH HOH A . C 3 HOH 11 277 277 HOH HOH A . C 3 HOH 12 278 278 HOH HOH A . C 3 HOH 13 279 279 HOH HOH A . C 3 HOH 14 280 280 HOH HOH A . C 3 HOH 15 281 281 HOH HOH A . C 3 HOH 16 282 282 HOH HOH A . C 3 HOH 17 283 283 HOH HOH A . C 3 HOH 18 284 284 HOH HOH A . C 3 HOH 19 285 285 HOH HOH A . C 3 HOH 20 286 286 HOH HOH A . C 3 HOH 21 287 287 HOH HOH A . C 3 HOH 22 288 288 HOH HOH A . C 3 HOH 23 289 289 HOH HOH A . C 3 HOH 24 290 290 HOH HOH A . C 3 HOH 25 291 291 HOH HOH A . C 3 HOH 26 292 292 HOH HOH A . C 3 HOH 27 293 293 HOH HOH A . C 3 HOH 28 294 294 HOH HOH A . C 3 HOH 29 295 295 HOH HOH A . C 3 HOH 30 296 296 HOH HOH A . C 3 HOH 31 297 297 HOH HOH A . C 3 HOH 32 298 298 HOH HOH A . C 3 HOH 33 300 300 HOH HOH A . C 3 HOH 34 301 301 HOH HOH A . C 3 HOH 35 302 302 HOH HOH A . C 3 HOH 36 303 303 HOH HOH A . C 3 HOH 37 304 304 HOH HOH A . C 3 HOH 38 305 305 HOH HOH A . C 3 HOH 39 307 307 HOH HOH A . C 3 HOH 40 308 308 HOH HOH A . C 3 HOH 41 309 309 HOH HOH A . C 3 HOH 42 310 310 HOH HOH A . C 3 HOH 43 311 311 HOH HOH A . C 3 HOH 44 312 312 HOH HOH A . C 3 HOH 45 313 313 HOH HOH A . C 3 HOH 46 314 314 HOH HOH A . C 3 HOH 47 315 315 HOH HOH A . C 3 HOH 48 317 317 HOH HOH A . C 3 HOH 49 318 318 HOH HOH A . C 3 HOH 50 320 320 HOH HOH A . C 3 HOH 51 321 321 HOH HOH A . C 3 HOH 52 322 322 HOH HOH A . C 3 HOH 53 323 323 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-09-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' citation_author 3 3 'Structure model' pdbx_database_PDB_obs_spr 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_abbrev' 3 3 'Structure model' '_citation.journal_id_ASTM' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 3 'Structure model' '_pdbx_database_status.status_code' 14 3 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 'PROTEUM PLUS' 'data collection' PLUS ? 2 SAINT 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 AMoRE phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 231 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 241 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 48 ? ? CZ A ARG 48 ? ? NH1 A ARG 48 ? ? 124.29 120.30 3.99 0.50 N 2 1 NE A ARG 48 ? ? CZ A ARG 48 ? ? NH2 A ARG 48 ? ? 115.85 120.30 -4.45 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 41 ? ? 77.77 -0.63 2 1 ALA A 79 ? ? 58.56 14.23 3 1 ILE A 175 ? ? -123.56 -69.98 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 0 ? A ALA 1 2 1 Y 1 A ILE 1 ? A ILE 2 3 1 Y 1 A PHE 2 ? A PHE 3 4 1 Y 1 A PRO 3 ? A PRO 4 5 1 Y 1 A LYS 4 ? A LYS 5 6 1 Y 1 A GLN 266 ? A GLN 267 7 1 Y 1 A PHE 267 ? A PHE 268 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #