HEADER TRANSCRIPTION REGULATOR 04-DEC-07 3BJN TITLE CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PUTATIVE TRANSCRIPTIONAL TITLE 2 REGULATOR FROM VIBRIO CHOLERAE, TARGETED DOMAIN 79-240 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN: RESIDUES 79-240; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: EL TOR INABA N16961 / SEROTYPE O1; SOURCE 5 ATCC: 39315; SOURCE 6 GENE: VC_A0029; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PUTATIVE TRANSCRIPTIONAL REGULATOR ICLR, VIBRIO CHOLERAE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.VOLKART,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3BJN 1 VERSN REVDAT 2 24-FEB-09 3BJN 1 VERSN REVDAT 1 11-DEC-07 3BJN 0 JRNL AUTH C.CHANG,L.VOLKART,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PUTATIVE JRNL TITL 2 TRANSCRIPTIONAL REGULATOR FROM VIBRIO CHOLERAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1646 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1344 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1829 ; 1.540 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 5.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;30.603 ;22.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;12.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 203 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1022 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 600 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 930 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 879 ; 1.076 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1391 ; 1.494 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 510 ; 3.188 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 432 ; 4.497 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9424 22.7817 46.0699 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: -0.0048 REMARK 3 T33: -0.0089 T12: 0.0149 REMARK 3 T13: 0.0211 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.5540 L22: 0.9293 REMARK 3 L33: 2.3073 L12: 0.3347 REMARK 3 L13: -0.6465 L23: -0.9494 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.1065 S13: -0.0625 REMARK 3 S21: -0.0659 S22: -0.0451 S23: -0.0959 REMARK 3 S31: 0.1708 S32: 0.1786 S33: 0.1190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3474 21.8733 52.2717 REMARK 3 T TENSOR REMARK 3 T11: -0.0363 T22: 0.0276 REMARK 3 T33: -0.0223 T12: 0.0139 REMARK 3 T13: 0.0005 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.4241 L22: 1.2950 REMARK 3 L33: 5.3795 L12: 0.6860 REMARK 3 L13: -0.5981 L23: -1.9657 REMARK 3 S TENSOR REMARK 3 S11: -0.1191 S12: 0.1549 S13: 0.0914 REMARK 3 S21: -0.0500 S22: 0.3158 S23: 0.1435 REMARK 3 S31: -0.0980 S32: -0.6091 S33: -0.1968 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3846 28.4237 41.7205 REMARK 3 T TENSOR REMARK 3 T11: -0.0408 T22: -0.0593 REMARK 3 T33: -0.0530 T12: -0.0269 REMARK 3 T13: -0.0060 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.7849 L22: 1.3003 REMARK 3 L33: 1.7706 L12: -0.1437 REMARK 3 L13: -0.4235 L23: -0.2935 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.0095 S13: -0.0256 REMARK 3 S21: 0.0003 S22: 0.0492 S23: 0.0986 REMARK 3 S31: 0.1952 S32: -0.2047 S33: -0.0557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB045601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.400 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL PH 8.5, 3.0 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.30400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.15650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.15650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.95600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.15650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.15650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.65200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.15650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.15650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.95600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.15650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.15650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.65200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 76 REMARK 465 ASN A 77 REMARK 465 ALA A 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 79 OG REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 HIS A 85 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 127 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 156 O HOH A 386 1.96 REMARK 500 OE1 GLN A 133 O HOH A 360 1.97 REMARK 500 N ALA A 126 O HOH A 449 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 128 O HOH A 358 5555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 122 136.72 74.83 REMARK 500 GLN A 125 -133.26 -100.15 REMARK 500 LEU A 140 -55.05 -158.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 354 DISTANCE = 5.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC26855.2 RELATED DB: TARGETDB DBREF 3BJN A 79 240 UNP Q9KND6 Q9KND6_VIBCH 79 240 SEQADV 3BJN SER A 76 UNP Q9KND6 EXPRESSION TAG SEQADV 3BJN ASN A 77 UNP Q9KND6 EXPRESSION TAG SEQADV 3BJN ALA A 78 UNP Q9KND6 EXPRESSION TAG SEQRES 1 A 165 SER ASN ALA SER TYR GLU THR SER GLN HIS ASN LEU ASP SEQRES 2 A 165 ALA VAL GLU ALA VAL LEU SER ARG LEU GLN LYS GLN THR SEQRES 3 A 165 GLY GLU MSE ALA ALA TYR MSE VAL PRO VAL GLY TYR ARG SEQRES 4 A 165 ALA LEU CYS VAL SER GLN ARG GLU SER MSE GLN ALA LEU SEQRES 5 A 165 ARG CYS SER PHE VAL GLN GLY GLN SER GLN PRO LEU LEU SEQRES 6 A 165 ARG GLY ALA SER SER LYS VAL MSE LEU ALA TYR MSE PRO SEQRES 7 A 165 ALA ALA ARG CYS GLU LYS ILE LEU ARG TYR PHE GLY GLU SEQRES 8 A 165 ASP PRO THR LEU ASP LYS TRP GLN SER GLU PHE GLU LYS SEQRES 9 A 165 ILE ARG ARG HIS GLY TYR ALA VAL SER THR SER GLU ILE SEQRES 10 A 165 ASP PRO GLY VAL SER GLY ILE SER ALA PRO VAL MSE LYS SEQRES 11 A 165 GLY SER LYS LEU ILE GLY ALA ILE SER VAL MSE ALA PRO SEQRES 12 A 165 ALA HIS ARG VAL GLU SER ASN LYS GLN ARG ILE ILE LEU SEQRES 13 A 165 HIS VAL LEU GLN ALA ALA ARG ALA LEU MODRES 3BJN MSE A 104 MET SELENOMETHIONINE MODRES 3BJN MSE A 108 MET SELENOMETHIONINE MODRES 3BJN MSE A 124 MET SELENOMETHIONINE MODRES 3BJN MSE A 148 MET SELENOMETHIONINE MODRES 3BJN MSE A 152 MET SELENOMETHIONINE MODRES 3BJN MSE A 204 MET SELENOMETHIONINE MODRES 3BJN MSE A 216 MET SELENOMETHIONINE HET MSE A 104 13 HET MSE A 108 8 HET MSE A 124 8 HET MSE A 148 8 HET MSE A 152 8 HET MSE A 204 8 HET MSE A 216 8 HET CL A 251 1 HET CL A 252 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *200(H2 O) HELIX 1 1 ASN A 86 GLY A 102 1 17 HELIX 2 2 ARG A 141 MSE A 152 1 12 HELIX 3 3 PRO A 153 PHE A 164 1 12 HELIX 4 4 LEU A 170 GLY A 184 1 15 HELIX 5 5 ALA A 219 ALA A 239 1 21 SHEET 1 A 6 SER A 136 PRO A 138 0 SHEET 2 A 6 ARG A 114 GLN A 120 -1 N ALA A 115 O GLN A 137 SHEET 3 A 6 MSE A 104 VAL A 111 -1 N VAL A 111 O ARG A 114 SHEET 4 A 6 LYS A 208 PRO A 218 -1 O SER A 214 N ALA A 106 SHEET 5 A 6 VAL A 196 LYS A 205 -1 N SER A 197 O ALA A 217 SHEET 6 A 6 ALA A 186 THR A 189 -1 N SER A 188 O GLY A 198 LINK C GLU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N ALA A 105 1555 1555 1.33 LINK C TYR A 107 N MSE A 108 1555 1555 1.32 LINK C MSE A 108 N VAL A 109 1555 1555 1.33 LINK C SER A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N GLN A 125 1555 1555 1.31 LINK C VAL A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N LEU A 149 1555 1555 1.34 LINK C TYR A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N PRO A 153 1555 1555 1.35 LINK C VAL A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N LYS A 205 1555 1555 1.33 LINK C VAL A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N ALA A 217 1555 1555 1.33 SITE 1 AC1 3 SER A 188 GLU A 191 HOH A 280 SITE 1 AC2 4 HIS A 220 ARG A 221 HOH A 261 HOH A 264 CRYST1 54.313 54.313 142.608 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007012 0.00000