HEADER ISOMERASE 05-DEC-07 3BJZ TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOHEPTOSE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SEDOHEPTULOSE 7-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 ATCC: 15692; SOURCE 6 GENE: GMHA, PA4425; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B KEYWDS SIS DOMAIN, ALPHA/BETA PROTEIN, LIPOPOLYSACCHARIDE BIOSYNTHESIS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, CARBOHYDRATE METABOLISM, CYTOPLASM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,E.EVDOKIMOVA,M.KUDRITSKA,J.OSIPIUK,A.JOACHIMIAK, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 06-NOV-24 3BJZ 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 3BJZ 1 VERSN REVDAT 3 05-FEB-08 3BJZ 1 JRNL REVDAT 2 29-JAN-08 3BJZ 1 JRNL REMARK REVDAT 1 18-DEC-07 3BJZ 0 JRNL AUTH P.L.TAYLOR,K.M.BLAKELY,G.P.DE LEON,J.R.WALKER,F.MCARTHUR, JRNL AUTH 2 E.EVDOKIMOVA,K.ZHANG,M.A.VALVANO,G.D.WRIGHT,M.S.JUNOP JRNL TITL STRUCTURE AND FUNCTION OF SEDOHEPTULOSE-7-PHOSPHATE JRNL TITL 2 ISOMERASE, A CRITICAL ENZYME FOR LIPOPOLYSACCHARIDE JRNL TITL 3 BIOSYNTHESIS AND A TARGET FOR ANTIBIOTIC ADJUVANTS. JRNL REF J.BIOL.CHEM. V. 283 2835 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18056714 JRNL DOI 10.1074/JBC.M706163200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 29349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.450 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5582 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7556 ; 1.288 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 724 ; 5.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;43.323 ;24.715 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 986 ;17.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 894 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4155 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2586 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3815 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3728 ; 1.785 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5785 ; 2.600 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2011 ; 3.408 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1771 ; 5.127 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3BJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3350, 0.1M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.92100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.80450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.92100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.80450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9880 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 83 REMARK 465 ASP A 84 REMARK 465 SER A 85 REMARK 465 SER A 86 REMARK 465 THR A 87 REMARK 465 ILE A 88 REMARK 465 THR A 89 REMARK 465 SER A 90 REMARK 465 ILE A 91 REMARK 465 ALA A 92 REMARK 465 ASN A 93 REMARK 465 ASP A 94 REMARK 465 TYR A 95 REMARK 465 SER A 96 REMARK 465 SER A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 SER B 85 REMARK 465 THR B 87 REMARK 465 ILE B 88 REMARK 465 THR B 89 REMARK 465 SER B 90 REMARK 465 ILE B 91 REMARK 465 ALA B 92 REMARK 465 ASN B 93 REMARK 465 ASP B 94 REMARK 465 TYR B 95 REMARK 465 GLU B 196 REMARK 465 GLU B 197 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 PHE C 69 REMARK 465 GLU C 70 REMARK 465 ARG C 71 REMARK 465 ASP C 84 REMARK 465 SER C 85 REMARK 465 SER C 86 REMARK 465 THR C 87 REMARK 465 ILE C 88 REMARK 465 THR C 89 REMARK 465 SER C 90 REMARK 465 ILE C 91 REMARK 465 ALA C 92 REMARK 465 ASN C 93 REMARK 465 ASP C 94 REMARK 465 TYR C 95 REMARK 465 SER C 96 REMARK 465 GLU C 196 REMARK 465 GLU C 197 REMARK 465 GLY D -1 REMARK 465 HIS D 0 REMARK 465 MSE D 1 REMARK 465 PHE D 69 REMARK 465 GLU D 70 REMARK 465 ARG D 71 REMARK 465 GLU D 72 REMARK 465 ASP D 84 REMARK 465 SER D 85 REMARK 465 SER D 86 REMARK 465 THR D 87 REMARK 465 ILE D 88 REMARK 465 THR D 89 REMARK 465 SER D 90 REMARK 465 ILE D 91 REMARK 465 ALA D 92 REMARK 465 ASN D 93 REMARK 465 ASP D 94 REMARK 465 TYR D 95 REMARK 465 SER D 96 REMARK 465 TYR D 97 REMARK 465 GLU D 196 REMARK 465 GLU D 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 59 CD OE1 NE2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 103 CE NZ REMARK 470 GLY B -1 N REMARK 470 GLN B 59 CD OE1 NE2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 TYR B 97 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 73 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 30.97 -81.18 REMARK 500 ARG A 147 -128.90 51.60 REMARK 500 MSE A 152 -45.96 65.43 REMARK 500 PHE B 69 -74.87 -57.12 REMARK 500 THR B 83 -54.65 -130.50 REMARK 500 ARG B 147 -123.90 54.17 REMARK 500 PRO C 77 83.39 -67.71 REMARK 500 ARG C 147 -127.82 47.91 REMARK 500 MSE D 3 114.26 -37.21 REMARK 500 ASN D 42 29.13 -77.72 REMARK 500 ASN D 42 27.82 -77.72 REMARK 500 PRO D 77 78.33 -63.04 REMARK 500 ASP D 113 158.62 -42.70 REMARK 500 ARG D 147 -131.21 47.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5045 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1X92 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE REMARK 900 ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D- REMARK 900 MANNOPYRANOSE-7-PHOSPHATE REMARK 900 RELATED ID: 2I22 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHOHEPTOSE ISOMERASE IN REMARK 900 COMPLEX WITH REACTION SUBSTRATE SEDOHEPTULOSE 7-PHOSPHATE REMARK 900 RELATED ID: 2I2W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHOHEPTOSE ISOMERASE DBREF 3BJZ A 1 197 UNP Q9HVZ0 GMHA_PSEAE 1 197 DBREF 3BJZ B 1 197 UNP Q9HVZ0 GMHA_PSEAE 1 197 DBREF 3BJZ C 1 197 UNP Q9HVZ0 GMHA_PSEAE 1 197 DBREF 3BJZ D 1 197 UNP Q9HVZ0 GMHA_PSEAE 1 197 SEQADV 3BJZ GLY A -1 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ HIS A 0 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ GLY B -1 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ HIS B 0 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ GLY C -1 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ HIS C 0 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ GLY D -1 UNP Q9HVZ0 EXPRESSION TAG SEQADV 3BJZ HIS D 0 UNP Q9HVZ0 EXPRESSION TAG SEQRES 1 A 199 GLY HIS MSE ASP MSE GLN HIS ARG ILE ARG GLN LEU PHE SEQRES 2 A 199 GLN ALA SER ILE GLU THR LYS GLN GLN ALA LEU GLU VAL SEQRES 3 A 199 LEU PRO PRO TYR ILE GLU GLN ALA SER LEU VAL MSE VAL SEQRES 4 A 199 ASN ALA LEU LEU ASN GLU GLY LYS ILE LEU SER CYS GLY SEQRES 5 A 199 ASN GLY GLY SER ALA GLY ASP ALA GLN HIS PHE SER SER SEQRES 6 A 199 GLU LEU LEU ASN ARG PHE GLU ARG GLU ARG PRO SER LEU SEQRES 7 A 199 PRO ALA VAL ALA LEU THR THR ASP SER SER THR ILE THR SEQRES 8 A 199 SER ILE ALA ASN ASP TYR SER TYR ASN GLU VAL PHE SER SEQRES 9 A 199 LYS GLN ILE ARG ALA LEU GLY GLN PRO GLY ASP VAL LEU SEQRES 10 A 199 LEU ALA ILE SER THR SER GLY ASN SER ALA ASN VAL ILE SEQRES 11 A 199 GLN ALA ILE GLN ALA ALA HIS ASP ARG GLU MSE LEU VAL SEQRES 12 A 199 VAL ALA LEU THR GLY ARG ASP GLY GLY GLY MSE ALA SER SEQRES 13 A 199 LEU LEU LEU PRO GLU ASP VAL GLU ILE ARG VAL PRO SER SEQRES 14 A 199 LYS ILE THR ALA ARG ILE GLN GLU VAL HIS LEU LEU ALA SEQRES 15 A 199 ILE HIS CYS LEU CYS ASP LEU ILE ASP ARG GLN LEU PHE SEQRES 16 A 199 GLY SER GLU GLU SEQRES 1 B 199 GLY HIS MSE ASP MSE GLN HIS ARG ILE ARG GLN LEU PHE SEQRES 2 B 199 GLN ALA SER ILE GLU THR LYS GLN GLN ALA LEU GLU VAL SEQRES 3 B 199 LEU PRO PRO TYR ILE GLU GLN ALA SER LEU VAL MSE VAL SEQRES 4 B 199 ASN ALA LEU LEU ASN GLU GLY LYS ILE LEU SER CYS GLY SEQRES 5 B 199 ASN GLY GLY SER ALA GLY ASP ALA GLN HIS PHE SER SER SEQRES 6 B 199 GLU LEU LEU ASN ARG PHE GLU ARG GLU ARG PRO SER LEU SEQRES 7 B 199 PRO ALA VAL ALA LEU THR THR ASP SER SER THR ILE THR SEQRES 8 B 199 SER ILE ALA ASN ASP TYR SER TYR ASN GLU VAL PHE SER SEQRES 9 B 199 LYS GLN ILE ARG ALA LEU GLY GLN PRO GLY ASP VAL LEU SEQRES 10 B 199 LEU ALA ILE SER THR SER GLY ASN SER ALA ASN VAL ILE SEQRES 11 B 199 GLN ALA ILE GLN ALA ALA HIS ASP ARG GLU MSE LEU VAL SEQRES 12 B 199 VAL ALA LEU THR GLY ARG ASP GLY GLY GLY MSE ALA SER SEQRES 13 B 199 LEU LEU LEU PRO GLU ASP VAL GLU ILE ARG VAL PRO SER SEQRES 14 B 199 LYS ILE THR ALA ARG ILE GLN GLU VAL HIS LEU LEU ALA SEQRES 15 B 199 ILE HIS CYS LEU CYS ASP LEU ILE ASP ARG GLN LEU PHE SEQRES 16 B 199 GLY SER GLU GLU SEQRES 1 C 199 GLY HIS MSE ASP MSE GLN HIS ARG ILE ARG GLN LEU PHE SEQRES 2 C 199 GLN ALA SER ILE GLU THR LYS GLN GLN ALA LEU GLU VAL SEQRES 3 C 199 LEU PRO PRO TYR ILE GLU GLN ALA SER LEU VAL MSE VAL SEQRES 4 C 199 ASN ALA LEU LEU ASN GLU GLY LYS ILE LEU SER CYS GLY SEQRES 5 C 199 ASN GLY GLY SER ALA GLY ASP ALA GLN HIS PHE SER SER SEQRES 6 C 199 GLU LEU LEU ASN ARG PHE GLU ARG GLU ARG PRO SER LEU SEQRES 7 C 199 PRO ALA VAL ALA LEU THR THR ASP SER SER THR ILE THR SEQRES 8 C 199 SER ILE ALA ASN ASP TYR SER TYR ASN GLU VAL PHE SER SEQRES 9 C 199 LYS GLN ILE ARG ALA LEU GLY GLN PRO GLY ASP VAL LEU SEQRES 10 C 199 LEU ALA ILE SER THR SER GLY ASN SER ALA ASN VAL ILE SEQRES 11 C 199 GLN ALA ILE GLN ALA ALA HIS ASP ARG GLU MSE LEU VAL SEQRES 12 C 199 VAL ALA LEU THR GLY ARG ASP GLY GLY GLY MSE ALA SER SEQRES 13 C 199 LEU LEU LEU PRO GLU ASP VAL GLU ILE ARG VAL PRO SER SEQRES 14 C 199 LYS ILE THR ALA ARG ILE GLN GLU VAL HIS LEU LEU ALA SEQRES 15 C 199 ILE HIS CYS LEU CYS ASP LEU ILE ASP ARG GLN LEU PHE SEQRES 16 C 199 GLY SER GLU GLU SEQRES 1 D 199 GLY HIS MSE ASP MSE GLN HIS ARG ILE ARG GLN LEU PHE SEQRES 2 D 199 GLN ALA SER ILE GLU THR LYS GLN GLN ALA LEU GLU VAL SEQRES 3 D 199 LEU PRO PRO TYR ILE GLU GLN ALA SER LEU VAL MSE VAL SEQRES 4 D 199 ASN ALA LEU LEU ASN GLU GLY LYS ILE LEU SER CYS GLY SEQRES 5 D 199 ASN GLY GLY SER ALA GLY ASP ALA GLN HIS PHE SER SER SEQRES 6 D 199 GLU LEU LEU ASN ARG PHE GLU ARG GLU ARG PRO SER LEU SEQRES 7 D 199 PRO ALA VAL ALA LEU THR THR ASP SER SER THR ILE THR SEQRES 8 D 199 SER ILE ALA ASN ASP TYR SER TYR ASN GLU VAL PHE SER SEQRES 9 D 199 LYS GLN ILE ARG ALA LEU GLY GLN PRO GLY ASP VAL LEU SEQRES 10 D 199 LEU ALA ILE SER THR SER GLY ASN SER ALA ASN VAL ILE SEQRES 11 D 199 GLN ALA ILE GLN ALA ALA HIS ASP ARG GLU MSE LEU VAL SEQRES 12 D 199 VAL ALA LEU THR GLY ARG ASP GLY GLY GLY MSE ALA SER SEQRES 13 D 199 LEU LEU LEU PRO GLU ASP VAL GLU ILE ARG VAL PRO SER SEQRES 14 D 199 LYS ILE THR ALA ARG ILE GLN GLU VAL HIS LEU LEU ALA SEQRES 15 D 199 ILE HIS CYS LEU CYS ASP LEU ILE ASP ARG GLN LEU PHE SEQRES 16 D 199 GLY SER GLU GLU MODRES 3BJZ MSE A 3 MET SELENOMETHIONINE MODRES 3BJZ MSE A 36 MET SELENOMETHIONINE MODRES 3BJZ MSE A 139 MET SELENOMETHIONINE MODRES 3BJZ MSE A 152 MET SELENOMETHIONINE MODRES 3BJZ MSE B 1 MET SELENOMETHIONINE MODRES 3BJZ MSE B 3 MET SELENOMETHIONINE MODRES 3BJZ MSE B 36 MET SELENOMETHIONINE MODRES 3BJZ MSE B 139 MET SELENOMETHIONINE MODRES 3BJZ MSE B 152 MET SELENOMETHIONINE MODRES 3BJZ MSE C 1 MET SELENOMETHIONINE MODRES 3BJZ MSE C 3 MET SELENOMETHIONINE MODRES 3BJZ MSE C 36 MET SELENOMETHIONINE MODRES 3BJZ MSE C 139 MET SELENOMETHIONINE MODRES 3BJZ MSE C 152 MET SELENOMETHIONINE MODRES 3BJZ MSE D 3 MET SELENOMETHIONINE MODRES 3BJZ MSE D 36 MET SELENOMETHIONINE MODRES 3BJZ MSE D 139 MET SELENOMETHIONINE MODRES 3BJZ MSE D 152 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 36 8 HET MSE A 139 8 HET MSE A 152 8 HET MSE B 1 8 HET MSE B 3 8 HET MSE B 36 8 HET MSE B 139 8 HET MSE B 152 8 HET MSE C 1 8 HET MSE C 3 8 HET MSE C 36 8 HET MSE C 139 8 HET MSE C 152 8 HET MSE D 3 8 HET MSE D 36 8 HET MSE D 139 8 HET MSE D 152 8 HET SO4 A 198 5 HET SO4 B 198 5 HET SO4 C 198 5 HET SO4 D 198 5 HET CL D 199 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 CL CL 1- FORMUL 10 HOH *148(H2 O) HELIX 1 1 ASP A 2 LEU A 25 1 24 HELIX 2 2 LEU A 25 ASN A 42 1 18 HELIX 3 3 GLY A 53 ARG A 68 1 16 HELIX 4 4 GLU A 99 GLY A 109 1 11 HELIX 5 5 SER A 124 ARG A 137 1 14 HELIX 6 6 ILE A 169 GLY A 194 1 26 HELIX 7 7 HIS B 0 LEU B 25 1 26 HELIX 8 8 LEU B 25 ASN B 42 1 18 HELIX 9 9 GLY B 52 ARG B 68 1 17 HELIX 10 10 SER B 96 ASN B 98 5 3 HELIX 11 11 GLU B 99 GLY B 109 1 11 HELIX 12 12 SER B 124 ARG B 137 1 14 HELIX 13 13 GLY B 149 LEU B 156 1 8 HELIX 14 14 ILE B 169 GLY B 194 1 26 HELIX 15 15 MSE C 1 LEU C 25 1 25 HELIX 16 16 LEU C 25 ASN C 42 1 18 HELIX 17 17 SER C 54 ASN C 67 1 14 HELIX 18 18 GLU C 99 GLY C 109 1 11 HELIX 19 19 SER C 124 ARG C 137 1 14 HELIX 20 20 GLY C 149 LEU C 156 1 8 HELIX 21 21 ILE C 169 GLY C 194 1 26 HELIX 22 22 MSE D 3 GLU D 23 1 21 HELIX 23 23 LEU D 25 ASN D 42 1 18 HELIX 24 24 SER D 54 ARG D 68 1 15 HELIX 25 25 GLU D 99 GLY D 109 1 11 HELIX 26 26 SER D 124 ARG D 137 1 14 HELIX 27 27 GLY D 149 SER D 154 1 6 HELIX 28 28 ILE D 169 PHE D 193 1 25 SHEET 1 A 5 ALA A 78 ALA A 80 0 SHEET 2 A 5 ILE A 46 GLY A 50 1 N ILE A 46 O VAL A 79 SHEET 3 A 5 VAL A 114 ILE A 118 1 O LEU A 116 N LEU A 47 SHEET 4 A 5 LEU A 140 THR A 145 1 O LEU A 144 N ALA A 117 SHEET 5 A 5 VAL A 161 ARG A 164 1 O ILE A 163 N ALA A 143 SHEET 1 B 5 ALA B 78 ALA B 80 0 SHEET 2 B 5 ILE B 46 GLY B 50 1 N ILE B 46 O VAL B 79 SHEET 3 B 5 VAL B 114 ILE B 118 1 O VAL B 114 N LEU B 47 SHEET 4 B 5 LEU B 140 GLY B 146 1 O VAL B 142 N ALA B 117 SHEET 5 B 5 VAL B 161 VAL B 165 1 O ILE B 163 N ALA B 143 SHEET 1 C 5 ALA C 78 ALA C 80 0 SHEET 2 C 5 ILE C 46 GLY C 50 1 N ILE C 46 O VAL C 79 SHEET 3 C 5 VAL C 114 ILE C 118 1 O VAL C 114 N LEU C 47 SHEET 4 C 5 LEU C 140 THR C 145 1 O VAL C 142 N LEU C 115 SHEET 5 C 5 VAL C 161 ARG C 164 1 O ILE C 163 N ALA C 143 SHEET 1 D 5 ALA D 78 ALA D 80 0 SHEET 2 D 5 ILE D 46 GLY D 50 1 N ILE D 46 O VAL D 79 SHEET 3 D 5 VAL D 114 ILE D 118 1 O LEU D 116 N LEU D 47 SHEET 4 D 5 LEU D 140 THR D 145 1 O VAL D 142 N LEU D 115 SHEET 5 D 5 VAL D 161 ARG D 164 1 O ILE D 163 N ALA D 143 LINK C ASP A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N GLN A 4 1555 1555 1.33 LINK C VAL A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N VAL A 37 1555 1555 1.33 LINK C GLU A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N LEU A 140 1555 1555 1.33 LINK C GLY A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N ALA A 153 1555 1555 1.33 LINK C HIS B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ASP B 2 1555 1555 1.33 LINK C ASP B 2 N MSE B 3 1555 1555 1.33 LINK C MSE B 3 N GLN B 4 1555 1555 1.33 LINK C VAL B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N VAL B 37 1555 1555 1.33 LINK C GLU B 138 N MSE B 139 1555 1555 1.32 LINK C MSE B 139 N LEU B 140 1555 1555 1.33 LINK C GLY B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N ALA B 153 1555 1555 1.33 LINK C MSE C 1 N ASP C 2 1555 1555 1.33 LINK C ASP C 2 N MSE C 3 1555 1555 1.33 LINK C MSE C 3 N GLN C 4 1555 1555 1.33 LINK C VAL C 35 N MSE C 36 1555 1555 1.33 LINK C MSE C 36 N VAL C 37 1555 1555 1.33 LINK C GLU C 138 N MSE C 139 1555 1555 1.33 LINK C MSE C 139 N LEU C 140 1555 1555 1.33 LINK C GLY C 151 N MSE C 152 1555 1555 1.33 LINK C MSE C 152 N ALA C 153 1555 1555 1.33 LINK C ASP D 2 N MSE D 3 1555 1555 1.33 LINK C MSE D 3 N GLN D 4 1555 1555 1.33 LINK C VAL D 35 N MSE D 36 1555 1555 1.33 LINK C MSE D 36 N VAL D 37 1555 1555 1.33 LINK C GLU D 138 N MSE D 139 1555 1555 1.33 LINK C MSE D 139 N LEU D 140 1555 1555 1.33 LINK C GLY D 151 N MSE D 152 1555 1555 1.33 LINK C MSE D 152 N ALA D 153 1555 1555 1.33 SITE 1 AC1 6 ASN A 51 SER A 54 SER A 119 THR A 120 SITE 2 AC1 6 SER A 121 SER A 124 SITE 1 AC2 5 SER B 119 THR B 120 SER B 121 SER B 124 SITE 2 AC2 5 HOH B 219 SITE 1 AC3 5 SER C 119 THR C 120 SER C 121 SER C 124 SITE 2 AC3 5 HOH C 199 SITE 1 AC4 6 ASN D 51 SER D 54 SER D 119 THR D 120 SITE 2 AC4 6 SER D 121 SER D 124 SITE 1 AC5 1 ARG D 147 CRYST1 123.842 131.609 48.774 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020503 0.00000