HEADER MEMBRANE PROTEIN 05-DEC-07 3BK6 TITLE CRYSTAL STRUCTURE OF A CORE DOMAIN OF STOMATIN FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PH STOMATIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 56-234; COMPND 5 SYNONYM: P-STOMATIN PH1511; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PH1511; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS STOMATIN, ARCHAEA, PYROCOCCUS HORIKOSHII, TRIMER, COILED-COIL, KEYWDS 2 FLOTILLIN, SPFH, MEMBRANE FUSION, TRAFFICKING, TRANSMEMBRANE, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,S.FUJII,I.MATSUI REVDAT 3 13-MAR-24 3BK6 1 SEQADV REVDAT 2 24-FEB-09 3BK6 1 VERSN REVDAT 1 19-FEB-08 3BK6 0 JRNL AUTH H.YOKOYAMA,S.FUJII,I.MATSUI JRNL TITL CRYSTAL STRUCTURE OF A CORE DOMAIN OF STOMATIN FROM JRNL TITL 2 PYROCOCCUS HORIKOSHII ILLUSTRATES A NOVEL TRIMERIC AND JRNL TITL 3 COILED-COIL FOLD JRNL REF J.MOL.BIOL. V. 376 868 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18182167 JRNL DOI 10.1016/J.JMB.2007.12.024 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOKOYAMA,E.MATSUI,T.AKIBA,K.HARATA,I.MATSUI REMARK 1 TITL MOLECULAR STRUCTURE OF A NOVEL MEMBRANE PROTEASE SPECIFIC REMARK 1 TITL 2 FOR A STOMATIN HOMOLOG FROM THE HYPERTHERMOPHILIC ARCHAEON REMARK 1 TITL 3 PYROCOCCUS HORIKOSHII REMARK 1 REF J.MOL.BIOL. V. 358 1152 2006 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16574150 REMARK 1 DOI 10.1016/J.JMB.2006.02.052 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 114.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.423 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.316 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3770 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5105 ; 2.176 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 7.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;39.510 ;24.514 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;24.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;21.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2756 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1735 ; 0.282 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2551 ; 0.330 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2455 ; 3.836 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3865 ; 5.889 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 4.393 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1240 ; 7.173 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.9796, 0.9900, 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUAMTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17735 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPD, 0.2M AMMONIUM SULFATE, 0.1M REMARK 280 HEPES-NAOH, 6% 1,5-DIAMINOPENTANE-HCL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.27650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.27650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 68.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 225 REMARK 465 SER A 226 REMARK 465 ASP A 227 REMARK 465 VAL A 228 REMARK 465 ALA A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 LYS A 232 REMARK 465 SER A 233 REMARK 465 ASN A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 ARG B 197 REMARK 465 GLN B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 GLU B 201 REMARK 465 LYS B 202 REMARK 465 LEU B 203 REMARK 465 ARG B 204 REMARK 465 GLU B 205 REMARK 465 ALA B 206 REMARK 465 ALA B 207 REMARK 465 GLU B 208 REMARK 465 ILE B 209 REMARK 465 ILE B 210 REMARK 465 SER B 211 REMARK 465 GLU B 212 REMARK 465 HIS B 213 REMARK 465 PRO B 214 REMARK 465 MET B 215 REMARK 465 ALA B 216 REMARK 465 LEU B 217 REMARK 465 GLN B 218 REMARK 465 LEU B 219 REMARK 465 ARG B 220 REMARK 465 THR B 221 REMARK 465 LEU B 222 REMARK 465 GLN B 223 REMARK 465 THR B 224 REMARK 465 ILE B 225 REMARK 465 SER B 226 REMARK 465 ASP B 227 REMARK 465 VAL B 228 REMARK 465 ALA B 229 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 465 LYS B 232 REMARK 465 SER B 233 REMARK 465 ASN B 234 REMARK 465 LEU B 235 REMARK 465 GLU B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 MET C 215 REMARK 465 ALA C 216 REMARK 465 LEU C 217 REMARK 465 GLN C 218 REMARK 465 LEU C 219 REMARK 465 ARG C 220 REMARK 465 THR C 221 REMARK 465 LEU C 222 REMARK 465 GLN C 223 REMARK 465 THR C 224 REMARK 465 ILE C 225 REMARK 465 SER C 226 REMARK 465 ASP C 227 REMARK 465 VAL C 228 REMARK 465 ALA C 229 REMARK 465 GLY C 230 REMARK 465 ASP C 231 REMARK 465 LYS C 232 REMARK 465 SER C 233 REMARK 465 ASN C 234 REMARK 465 LEU C 235 REMARK 465 GLU C 236 REMARK 465 HIS C 237 REMARK 465 HIS C 238 REMARK 465 HIS C 239 REMARK 465 HIS C 240 REMARK 465 HIS C 241 REMARK 465 HIS C 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 85 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 63 133.57 -38.68 REMARK 500 ASP A 81 -39.12 3.91 REMARK 500 ASN A 82 15.61 99.32 REMARK 500 ALA A 89 -170.82 -172.41 REMARK 500 ARG A 94 112.90 -166.02 REMARK 500 TYR A 108 -39.56 -39.13 REMARK 500 GLN A 114 -71.79 -54.14 REMARK 500 GLN A 126 36.71 -86.69 REMARK 500 PRO A 153 -30.33 -38.32 REMARK 500 LYS A 164 -89.96 -85.57 REMARK 500 ARG A 189 -85.62 -45.29 REMARK 500 ALA A 193 -35.14 -39.15 REMARK 500 VAL B 63 94.74 -57.55 REMARK 500 ASP B 81 -19.74 -42.47 REMARK 500 ASN B 82 19.83 81.97 REMARK 500 GLN B 117 -75.39 -56.94 REMARK 500 THR B 118 -50.73 -28.68 REMARK 500 LEU B 129 -60.09 -22.07 REMARK 500 GLU B 149 -78.01 -44.19 REMARK 500 ALA B 150 -36.01 -30.44 REMARK 500 PRO B 153 -21.21 -39.10 REMARK 500 LYS B 164 -97.12 -93.91 REMARK 500 ARG B 186 -78.41 -72.68 REMARK 500 ILE B 190 6.53 -69.76 REMARK 500 ALA B 195 -70.50 -61.50 REMARK 500 PRO C 73 136.67 -39.04 REMARK 500 ASP C 81 -31.87 -12.61 REMARK 500 ASN C 82 6.32 89.12 REMARK 500 GLU C 135 31.99 -99.59 REMARK 500 LEU C 139 -71.80 -49.71 REMARK 500 ASN C 140 -51.96 -17.98 REMARK 500 GLU C 149 -76.76 -46.11 REMARK 500 LYS C 164 -75.35 -98.02 REMARK 500 SER C 211 -84.88 -61.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 80 ASP A 81 136.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 3BK6 A 56 234 UNP O59180 Y1511_PYRHO 56 234 DBREF 3BK6 B 56 234 UNP O59180 Y1511_PYRHO 56 234 DBREF 3BK6 C 56 234 UNP O59180 Y1511_PYRHO 56 234 SEQADV 3BK6 MET A 55 UNP O59180 INITIATING METHIONINE SEQADV 3BK6 LEU A 235 UNP O59180 EXPRESSION TAG SEQADV 3BK6 GLU A 236 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS A 237 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS A 238 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS A 239 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS A 240 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS A 241 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS A 242 UNP O59180 EXPRESSION TAG SEQADV 3BK6 MET B 55 UNP O59180 INITIATING METHIONINE SEQADV 3BK6 LEU B 235 UNP O59180 EXPRESSION TAG SEQADV 3BK6 GLU B 236 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS B 237 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS B 238 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS B 239 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS B 240 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS B 241 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS B 242 UNP O59180 EXPRESSION TAG SEQADV 3BK6 MET C 55 UNP O59180 INITIATING METHIONINE SEQADV 3BK6 LEU C 235 UNP O59180 EXPRESSION TAG SEQADV 3BK6 GLU C 236 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS C 237 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS C 238 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS C 239 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS C 240 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS C 241 UNP O59180 EXPRESSION TAG SEQADV 3BK6 HIS C 242 UNP O59180 EXPRESSION TAG SEQRES 1 A 188 MET ILE PHE GLU LYS ALA VAL ILE VAL ASP LEU ARG THR SEQRES 2 A 188 GLN VAL LEU ASP VAL PRO VAL GLN GLU THR ILE THR LYS SEQRES 3 A 188 ASP ASN VAL PRO VAL ARG VAL ASN ALA VAL VAL TYR PHE SEQRES 4 A 188 ARG VAL VAL ASP PRO VAL LYS ALA VAL THR GLN VAL LYS SEQRES 5 A 188 ASN TYR ILE MET ALA THR SER GLN ILE SER GLN THR THR SEQRES 6 A 188 LEU ARG SER VAL ILE GLY GLN ALA HIS LEU ASP GLU LEU SEQRES 7 A 188 LEU SER GLU ARG ASP LYS LEU ASN MET GLN LEU GLN ARG SEQRES 8 A 188 ILE ILE ASP GLU ALA THR ASP PRO TRP GLY ILE LYS VAL SEQRES 9 A 188 THR ALA VAL GLU ILE LYS ASP VAL GLU LEU PRO ALA GLY SEQRES 10 A 188 MET GLN LYS ALA MET ALA ARG GLN ALA GLU ALA GLU ARG SEQRES 11 A 188 GLU ARG ARG ALA ARG ILE THR LEU ALA GLU ALA GLU ARG SEQRES 12 A 188 GLN ALA ALA GLU LYS LEU ARG GLU ALA ALA GLU ILE ILE SEQRES 13 A 188 SER GLU HIS PRO MET ALA LEU GLN LEU ARG THR LEU GLN SEQRES 14 A 188 THR ILE SER ASP VAL ALA GLY ASP LYS SER ASN LEU GLU SEQRES 15 A 188 HIS HIS HIS HIS HIS HIS SEQRES 1 B 188 MET ILE PHE GLU LYS ALA VAL ILE VAL ASP LEU ARG THR SEQRES 2 B 188 GLN VAL LEU ASP VAL PRO VAL GLN GLU THR ILE THR LYS SEQRES 3 B 188 ASP ASN VAL PRO VAL ARG VAL ASN ALA VAL VAL TYR PHE SEQRES 4 B 188 ARG VAL VAL ASP PRO VAL LYS ALA VAL THR GLN VAL LYS SEQRES 5 B 188 ASN TYR ILE MET ALA THR SER GLN ILE SER GLN THR THR SEQRES 6 B 188 LEU ARG SER VAL ILE GLY GLN ALA HIS LEU ASP GLU LEU SEQRES 7 B 188 LEU SER GLU ARG ASP LYS LEU ASN MET GLN LEU GLN ARG SEQRES 8 B 188 ILE ILE ASP GLU ALA THR ASP PRO TRP GLY ILE LYS VAL SEQRES 9 B 188 THR ALA VAL GLU ILE LYS ASP VAL GLU LEU PRO ALA GLY SEQRES 10 B 188 MET GLN LYS ALA MET ALA ARG GLN ALA GLU ALA GLU ARG SEQRES 11 B 188 GLU ARG ARG ALA ARG ILE THR LEU ALA GLU ALA GLU ARG SEQRES 12 B 188 GLN ALA ALA GLU LYS LEU ARG GLU ALA ALA GLU ILE ILE SEQRES 13 B 188 SER GLU HIS PRO MET ALA LEU GLN LEU ARG THR LEU GLN SEQRES 14 B 188 THR ILE SER ASP VAL ALA GLY ASP LYS SER ASN LEU GLU SEQRES 15 B 188 HIS HIS HIS HIS HIS HIS SEQRES 1 C 188 MET ILE PHE GLU LYS ALA VAL ILE VAL ASP LEU ARG THR SEQRES 2 C 188 GLN VAL LEU ASP VAL PRO VAL GLN GLU THR ILE THR LYS SEQRES 3 C 188 ASP ASN VAL PRO VAL ARG VAL ASN ALA VAL VAL TYR PHE SEQRES 4 C 188 ARG VAL VAL ASP PRO VAL LYS ALA VAL THR GLN VAL LYS SEQRES 5 C 188 ASN TYR ILE MET ALA THR SER GLN ILE SER GLN THR THR SEQRES 6 C 188 LEU ARG SER VAL ILE GLY GLN ALA HIS LEU ASP GLU LEU SEQRES 7 C 188 LEU SER GLU ARG ASP LYS LEU ASN MET GLN LEU GLN ARG SEQRES 8 C 188 ILE ILE ASP GLU ALA THR ASP PRO TRP GLY ILE LYS VAL SEQRES 9 C 188 THR ALA VAL GLU ILE LYS ASP VAL GLU LEU PRO ALA GLY SEQRES 10 C 188 MET GLN LYS ALA MET ALA ARG GLN ALA GLU ALA GLU ARG SEQRES 11 C 188 GLU ARG ARG ALA ARG ILE THR LEU ALA GLU ALA GLU ARG SEQRES 12 C 188 GLN ALA ALA GLU LYS LEU ARG GLU ALA ALA GLU ILE ILE SEQRES 13 C 188 SER GLU HIS PRO MET ALA LEU GLN LEU ARG THR LEU GLN SEQRES 14 C 188 THR ILE SER ASP VAL ALA GLY ASP LYS SER ASN LEU GLU SEQRES 15 C 188 HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 97 GLN A 104 1 8 HELIX 2 2 ASN A 107 GLN A 126 1 20 HELIX 3 3 HIS A 128 GLU A 135 1 8 HELIX 4 4 GLU A 135 THR A 151 1 17 HELIX 5 5 ASP A 152 TRP A 154 5 3 HELIX 6 6 GLY A 171 HIS A 213 1 43 HELIX 7 7 MET A 215 LEU A 222 1 8 HELIX 8 8 ASP B 97 GLN B 104 1 8 HELIX 9 9 ASN B 107 GLN B 126 1 20 HELIX 10 10 HIS B 128 GLU B 135 1 8 HELIX 11 11 GLU B 135 THR B 151 1 17 HELIX 12 12 ASP B 152 TRP B 154 5 3 HELIX 13 13 GLY B 171 ALA B 188 1 18 HELIX 14 14 ASP C 97 GLN C 104 1 8 HELIX 15 15 ASN C 107 ALA C 127 1 21 HELIX 16 16 HIS C 128 GLU C 135 1 8 HELIX 17 17 GLU C 135 THR C 151 1 17 HELIX 18 18 ASP C 152 TRP C 154 5 3 HELIX 19 19 GLY C 171 HIS C 213 1 43 SHEET 1 A 4 PHE A 57 LYS A 59 0 SHEET 2 A 4 ILE C 156 PRO C 169 -1 O LEU C 168 N GLU A 58 SHEET 3 A 4 PRO C 84 VAL C 95 -1 N ASN C 88 O LYS C 164 SHEET 4 A 4 GLN C 68 ILE C 78 -1 N GLN C 75 O VAL C 87 SHEET 1 B 4 GLN A 68 ILE A 78 0 SHEET 2 B 4 PRO A 84 VAL A 95 -1 O PHE A 93 N GLN A 68 SHEET 3 B 4 ILE A 156 PRO A 169 -1 O THR A 159 N TYR A 92 SHEET 4 B 4 PHE B 57 LYS B 59 -1 O GLU B 58 N LEU A 168 SHEET 1 C 4 GLN B 68 ILE B 78 0 SHEET 2 C 4 PRO B 84 VAL B 95 -1 O ALA B 89 N VAL B 72 SHEET 3 C 4 ILE B 156 PRO B 169 -1 O LYS B 164 N ASN B 88 SHEET 4 C 4 PHE C 57 LYS C 59 -1 O GLU C 58 N LEU B 168 CRYST1 142.553 137.150 58.544 90.00 107.61 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007015 0.000000 0.002227 0.00000 SCALE2 0.000000 0.007291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017921 0.00000