HEADER HYDROLYASE/TRANSLATION 06-DEC-07 3BK7 TITLE STRUCTURE OF THE COMPLETE ABCE1/RNAASE-L INHIBITOR PROTEIN FROM TITLE 2 PYROCOCCUS ABYSII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER ATP-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ABCE1/RNAASE-L INHIBITOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC ATPASE, IRON-SULFUR CLUSTER, ADENOSINE DIPHOSPHATE, ATP-BINDING, KEYWDS 2 NUCLEOTIDE-BINDING, HYDROLYASE-TRANSLATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KARCHER,K.P.HOPFNER REVDAT 5 13-NOV-24 3BK7 1 REMARK REVDAT 4 01-NOV-23 3BK7 1 REMARK SEQADV REVDAT 3 25-OCT-17 3BK7 1 REMARK REVDAT 2 01-APR-08 3BK7 1 JRNL VERSN REVDAT 1 25-DEC-07 3BK7 0 JRNL AUTH A.KARCHER,A.SCHELE,K.P.HOPFNER JRNL TITL X-RAY STRUCTURE OF THE COMPLETE ABC ENZYME ABCE1 FROM JRNL TITL 2 PYROCOCCUS ABYSSI JRNL REF J.BIOL.CHEM. V. 283 7962 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18160405 JRNL DOI 10.1074/JBC.M707347200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 16308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-FACTOR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 796 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70100 REMARK 3 B22 (A**2) : -0.70100 REMARK 3 B33 (A**2) : 1.40200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.353 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.297 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.234 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.875 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.891 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 56.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : F4S_ADP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : F4S_ADP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16784 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ANAEROBIC, 50MM TRIS PH 8.0, 150MM REMARK 280 NACL, 5MM DITHIOTHREITOL 0.2 M CALCIUM ACETATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.69000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.60000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 239.53500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.60000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.84500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 239.53500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.84500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 159.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 TRP A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 PRO A -7 REMARK 465 GLN A -6 REMARK 465 PHE A -5 REMARK 465 GLU A -4 REMARK 465 LYS A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 HIS A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 6 CZ NH1 NH2 REMARK 480 ASP A 13 OD1 OD2 REMARK 480 GLU A 26 OE1 OE2 REMARK 480 GLU A 44 OE1 OE2 REMARK 480 ASN A 45 OD1 ND2 REMARK 480 GLU A 77 OE1 OE2 REMARK 480 ASP A 80 OD1 OD2 REMARK 480 LYS A 101 NZ REMARK 480 ASP A 102 OD1 OD2 REMARK 480 LYS A 121 NZ REMARK 480 GLU A 133 OE1 OE2 REMARK 480 ASP A 134 OD1 OD2 REMARK 480 ASN A 140 OD1 ND2 REMARK 480 GLU A 149 OE1 OE2 REMARK 480 ASP A 172 OD1 OD2 REMARK 480 GLU A 205 OE1 OE2 REMARK 480 SER A 429 OG REMARK 480 ASN A 435 OD1 ND2 REMARK 480 GLU A 456 OE1 OE2 REMARK 480 ASP A 457 OD1 OD2 REMARK 480 SER A 568 OG REMARK 480 ALA A 593 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 537 NH1 ARG A 548 5344 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 135.83 154.41 REMARK 500 LYS A 4 131.66 -170.34 REMARK 500 ASP A 13 -6.36 -58.38 REMARK 500 ASN A 16 85.97 -154.59 REMARK 500 PHE A 23 76.56 44.39 REMARK 500 CYS A 25 -76.07 -55.75 REMARK 500 GLU A 37 54.57 -116.72 REMARK 500 GLU A 44 -66.77 -169.25 REMARK 500 GLU A 52 -17.79 -46.28 REMARK 500 SER A 54 -85.70 -109.87 REMARK 500 CYS A 55 112.79 3.11 REMARK 500 CYS A 65 108.37 -36.16 REMARK 500 PRO A 66 -18.18 -47.87 REMARK 500 PHE A 67 -94.81 -113.26 REMARK 500 ASN A 68 52.43 165.94 REMARK 500 GLN A 78 -43.02 159.04 REMARK 500 ARG A 96 167.12 64.99 REMARK 500 GLU A 133 -143.06 -141.16 REMARK 500 LYS A 176 47.05 -92.82 REMARK 500 ALA A 177 -28.37 -152.67 REMARK 500 LYS A 194 34.52 -155.46 REMARK 500 VAL A 207 -32.55 -39.15 REMARK 500 TYR A 244 -2.47 69.27 REMARK 500 GLU A 263 -1.12 -58.92 REMARK 500 VAL A 293 -66.51 -103.43 REMARK 500 ASN A 319 62.40 66.69 REMARK 500 LEU A 332 -47.13 155.99 REMARK 500 LYS A 398 123.80 -172.65 REMARK 500 ASP A 402 72.58 -109.47 REMARK 500 ASP A 428 80.45 -161.34 REMARK 500 LEU A 441 -70.82 -124.19 REMARK 500 ASP A 449 4.52 -69.15 REMARK 500 GLU A 483 75.41 57.78 REMARK 500 ARG A 537 -70.74 -117.53 REMARK 500 ARG A 563 -161.21 -107.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 597 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 SF4 A 597 S1 110.8 REMARK 620 3 SF4 A 597 S2 125.5 108.5 REMARK 620 4 SF4 A 597 S3 99.7 106.2 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 597 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 SF4 A 597 S1 129.3 REMARK 620 3 SF4 A 597 S3 114.5 95.8 REMARK 620 4 SF4 A 597 S4 105.5 101.8 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 597 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 SF4 A 597 S2 109.9 REMARK 620 3 SF4 A 597 S3 133.2 93.0 REMARK 620 4 SF4 A 597 S4 110.8 103.0 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 596 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 SF4 A 596 S2 106.0 REMARK 620 3 SF4 A 596 S3 130.7 93.0 REMARK 620 4 SF4 A 596 S4 116.6 102.9 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 596 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 55 SG REMARK 620 2 SF4 A 596 S1 92.3 REMARK 620 3 SF4 A 596 S3 126.9 95.8 REMARK 620 4 SF4 A 596 S4 121.0 101.8 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 596 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 58 SG REMARK 620 2 SF4 A 596 S1 122.7 REMARK 620 3 SF4 A 596 S2 99.4 108.5 REMARK 620 4 SF4 A 596 S3 114.1 106.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 596 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 SF4 A 596 S1 110.6 REMARK 620 3 SF4 A 596 S2 120.3 99.9 REMARK 620 4 SF4 A 596 S4 115.3 100.6 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 597 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 SF4 A 597 S1 113.4 REMARK 620 3 SF4 A 597 S2 116.6 100.0 REMARK 620 4 SF4 A 597 S4 116.5 100.9 107.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 594 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 597 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 598 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 599 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YQT RELATED DB: PDB REMARK 900 RNASE-L INHIBITOR FROM PYROCOCCUS FURIOSUS DBREF 3BK7 A 1 593 UNP Q9UZA4 Q9UZA4_PYRAB 1 593 SEQADV 3BK7 MET A -13 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 ALA A -12 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 SER A -11 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 TRP A -10 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 SER A -9 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 HIS A -8 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 PRO A -7 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 GLN A -6 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 PHE A -5 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 GLU A -4 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 LYS A -3 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 GLY A -2 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 ALA A -1 UNP Q9UZA4 EXPRESSION TAG SEQADV 3BK7 HIS A 0 UNP Q9UZA4 EXPRESSION TAG SEQRES 1 A 607 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 607 HIS MET VAL ARG LYS MET ARG ILE ALA VAL ILE ASP TYR SEQRES 3 A 607 ASP LYS CYS ASN PRO ASP LYS CYS GLY HIS PHE LEU CYS SEQRES 4 A 607 GLU ARG VAL CYS PRO VAL ASN ARG MET GLY GLY GLU ALA SEQRES 5 A 607 ILE ILE ILE ASP GLU GLU ASN TYR LYS PRO ILE ILE GLN SEQRES 6 A 607 GLU ALA SER CYS THR GLY CYS GLY ILE CYS VAL HIS LYS SEQRES 7 A 607 CYS PRO PHE ASN ALA ILE SER ILE VAL ASN LEU PRO GLU SEQRES 8 A 607 GLN LEU ASP GLU ASP CYS VAL HIS ARG TYR GLY VAL ASN SEQRES 9 A 607 ALA PHE VAL LEU TYR ARG LEU PRO ILE VAL LYS ASP GLY SEQRES 10 A 607 MET VAL VAL GLY ILE VAL GLY PRO ASN GLY THR GLY LYS SEQRES 11 A 607 THR THR ALA VAL LYS ILE LEU ALA GLY GLN LEU ILE PRO SEQRES 12 A 607 ASN LEU CYS GLU ASP ASN ASP SER TRP ASP ASN VAL ILE SEQRES 13 A 607 ARG ALA PHE ARG GLY ASN GLU LEU GLN ASN TYR PHE GLU SEQRES 14 A 607 ARG LEU LYS ASN GLY GLU ILE ARG PRO VAL VAL LYS PRO SEQRES 15 A 607 GLN TYR VAL ASP LEU LEU PRO LYS ALA VAL LYS GLY LYS SEQRES 16 A 607 VAL ARG GLU LEU LEU LYS LYS VAL ASP GLU VAL GLY LYS SEQRES 17 A 607 PHE GLU GLU VAL VAL LYS GLU LEU GLU LEU GLU ASN VAL SEQRES 18 A 607 LEU ASP ARG GLU LEU HIS GLN LEU SER GLY GLY GLU LEU SEQRES 19 A 607 GLN ARG VAL ALA ILE ALA ALA ALA LEU LEU ARG LYS ALA SEQRES 20 A 607 HIS PHE TYR PHE PHE ASP GLU PRO SER SER TYR LEU ASP SEQRES 21 A 607 ILE ARG GLN ARG LEU LYS VAL ALA ARG VAL ILE ARG ARG SEQRES 22 A 607 LEU ALA ASN GLU GLY LYS ALA VAL LEU VAL VAL GLU HIS SEQRES 23 A 607 ASP LEU ALA VAL LEU ASP TYR LEU SER ASP VAL ILE HIS SEQRES 24 A 607 VAL VAL TYR GLY GLU PRO GLY VAL TYR GLY ILE PHE SER SEQRES 25 A 607 LYS PRO LYS GLY THR ARG ASN GLY ILE ASN GLU PHE LEU SEQRES 26 A 607 GLN GLY TYR LEU LYS ASP GLU ASN VAL ARG PHE ARG PRO SEQRES 27 A 607 TYR GLU ILE ARG PHE THR LYS LEU SER GLU ARG VAL ASP SEQRES 28 A 607 VAL GLU ARG GLU THR LEU VAL GLU TYR PRO ARG LEU VAL SEQRES 29 A 607 LYS ASP TYR GLY SER PHE LYS LEU GLU VAL GLU PRO GLY SEQRES 30 A 607 GLU ILE ARG LYS GLY GLU VAL ILE GLY ILE VAL GLY PRO SEQRES 31 A 607 ASN GLY ILE GLY LYS THR THR PHE VAL LYS MET LEU ALA SEQRES 32 A 607 GLY VAL GLU GLU PRO THR GLU GLY LYS VAL GLU TRP ASP SEQRES 33 A 607 LEU THR VAL ALA TYR LYS PRO GLN TYR ILE LYS ALA GLU SEQRES 34 A 607 TYR GLU GLY THR VAL TYR GLU LEU LEU SER LYS ILE ASP SEQRES 35 A 607 SER SER LYS LEU ASN SER ASN PHE TYR LYS THR GLU LEU SEQRES 36 A 607 LEU LYS PRO LEU GLY ILE ILE ASP LEU TYR ASP ARG ASN SEQRES 37 A 607 VAL GLU ASP LEU SER GLY GLY GLU LEU GLN ARG VAL ALA SEQRES 38 A 607 ILE ALA ALA THR LEU LEU ARG ASP ALA ASP ILE TYR LEU SEQRES 39 A 607 LEU ASP GLU PRO SER ALA TYR LEU ASP VAL GLU GLN ARG SEQRES 40 A 607 LEU ALA VAL SER ARG ALA ILE ARG HIS LEU MET GLU LYS SEQRES 41 A 607 ASN GLU LYS THR ALA LEU VAL VAL GLU HIS ASP VAL LEU SEQRES 42 A 607 MET ILE ASP TYR VAL SER ASP ARG LEU ILE VAL PHE GLU SEQRES 43 A 607 GLY GLU PRO GLY ARG HIS GLY ARG ALA LEU PRO PRO MET SEQRES 44 A 607 GLY MET ARG GLU GLY MET ASN ARG PHE LEU ALA SER VAL SEQRES 45 A 607 GLY ILE THR PHE ARG ARG ASP PRO ASP SER GLY ARG PRO SEQRES 46 A 607 ARG ALA ASN LYS GLU GLY SER VAL LYS ASP ARG GLU GLN SEQRES 47 A 607 LYS ALA ARG GLY GLU TYR TYR TYR ALA HET MG A 594 1 HET MG A 595 1 HET SF4 A 596 8 HET SF4 A 597 8 HET ADP A 598 27 HET ADP A 599 27 HETNAM MG MAGNESIUM ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 SF4 2(FE4 S4) FORMUL 6 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 HOH *114(H2 O) HELIX 1 1 ASP A 11 CYS A 15 5 5 HELIX 2 2 PHE A 23 CYS A 29 1 7 HELIX 3 3 CYS A 29 MET A 34 1 6 HELIX 4 4 GLY A 59 CYS A 65 1 7 HELIX 5 5 GLN A 78 GLU A 81 5 4 HELIX 6 6 GLY A 115 ALA A 124 1 10 HELIX 7 7 SER A 137 PHE A 145 1 9 HELIX 8 8 GLU A 149 GLY A 160 1 12 HELIX 9 9 TYR A 170 ALA A 177 5 8 HELIX 10 10 LYS A 181 VAL A 189 1 9 HELIX 11 11 LYS A 194 LEU A 202 1 9 HELIX 12 12 ASN A 206 ARG A 210 5 5 HELIX 13 13 GLU A 211 LEU A 215 5 5 HELIX 14 14 SER A 216 ARG A 231 1 16 HELIX 15 15 ASP A 246 GLU A 263 1 18 HELIX 16 16 ASP A 273 SER A 281 1 9 HELIX 17 17 THR A 303 GLY A 313 1 11 HELIX 18 18 GLY A 380 ALA A 389 1 10 HELIX 19 19 THR A 419 SER A 434 1 16 HELIX 20 20 SER A 434 LEU A 441 1 8 HELIX 21 21 LEU A 441 GLY A 446 1 6 HELIX 22 22 ASN A 454 LEU A 458 5 5 HELIX 23 23 SER A 459 LEU A 473 1 15 HELIX 24 24 ASP A 489 ASN A 507 1 19 HELIX 25 25 ASP A 517 SER A 525 1 9 HELIX 26 26 MET A 547 ALA A 556 1 10 HELIX 27 27 SER A 578 ARG A 587 1 10 SHEET 1 A 2 MET A 5 VAL A 9 0 SHEET 2 A 2 SER A 71 LEU A 75 -1 O LEU A 75 N MET A 5 SHEET 1 B 2 ILE A 39 ILE A 41 0 SHEET 2 B 2 PRO A 48 ILE A 50 -1 O ILE A 49 N ILE A 40 SHEET 1 C 8 CYS A 83 ARG A 86 0 SHEET 2 C 8 VAL A 93 TYR A 95 -1 O LEU A 94 N HIS A 85 SHEET 3 C 8 TYR A 294 PHE A 297 1 O GLY A 295 N TYR A 95 SHEET 4 C 8 VAL A 283 TYR A 288 -1 N TYR A 288 O ILE A 296 SHEET 5 C 8 VAL A 105 VAL A 109 1 N GLY A 107 O VAL A 283 SHEET 6 C 8 ALA A 266 VAL A 270 1 O VAL A 267 N VAL A 106 SHEET 7 C 8 PHE A 235 ASP A 239 1 N PHE A 238 O LEU A 268 SHEET 8 C 8 VAL A 165 LYS A 167 1 N VAL A 165 O PHE A 237 SHEET 1 D 5 CYS A 83 ARG A 86 0 SHEET 2 D 5 VAL A 93 TYR A 95 -1 O LEU A 94 N HIS A 85 SHEET 3 D 5 TYR A 294 PHE A 297 1 O GLY A 295 N TYR A 95 SHEET 4 D 5 VAL A 283 TYR A 288 -1 N TYR A 288 O ILE A 296 SHEET 5 D 5 LYS A 301 GLY A 302 -1 O LYS A 301 N ILE A 284 SHEET 1 E 2 TYR A 314 LEU A 315 0 SHEET 2 E 2 VAL A 320 ARG A 321 -1 O VAL A 320 N LEU A 315 SHEET 1 F 2 THR A 342 TYR A 346 0 SHEET 2 F 2 GLY A 363 ARG A 366 -1 O ILE A 365 N LEU A 343 SHEET 1 G 8 LEU A 349 ASP A 352 0 SHEET 2 G 8 LYS A 357 VAL A 360 -1 O VAL A 360 N LEU A 349 SHEET 3 G 8 HIS A 538 ALA A 541 1 O GLY A 539 N LYS A 357 SHEET 4 G 8 ARG A 527 GLU A 534 -1 N GLU A 534 O HIS A 538 SHEET 5 G 8 VAL A 370 VAL A 374 1 N GLY A 372 O ILE A 529 SHEET 6 G 8 THR A 510 VAL A 514 1 O VAL A 513 N ILE A 371 SHEET 7 G 8 ILE A 478 ASP A 482 1 N TYR A 479 O LEU A 512 SHEET 8 G 8 VAL A 405 LYS A 408 1 N LYS A 408 O LEU A 480 SHEET 1 H 5 LEU A 349 ASP A 352 0 SHEET 2 H 5 LYS A 357 VAL A 360 -1 O VAL A 360 N LEU A 349 SHEET 3 H 5 HIS A 538 ALA A 541 1 O GLY A 539 N LYS A 357 SHEET 4 H 5 ARG A 527 GLU A 534 -1 N GLU A 534 O HIS A 538 SHEET 5 H 5 MET A 545 GLY A 546 -1 O MET A 545 N LEU A 528 SHEET 1 I 2 PHE A 562 ARG A 564 0 SHEET 2 I 2 PRO A 571 ALA A 573 -1 O ARG A 572 N ARG A 563 SSBOND 1 CYS A 83 CYS A 132 1555 1555 2.03 LINK SG CYS A 15 FE4 SF4 A 597 1555 1555 2.44 LINK SG CYS A 20 FE2 SF4 A 597 1555 1555 2.43 LINK SG CYS A 25 FE1 SF4 A 597 1555 1555 2.34 LINK SG CYS A 29 FE1 SF4 A 596 1555 1555 2.57 LINK SG CYS A 55 FE2 SF4 A 596 1555 1555 2.45 LINK SG CYS A 58 FE4 SF4 A 596 1555 1555 2.49 LINK SG CYS A 61 FE3 SF4 A 596 1555 1555 2.36 LINK SG CYS A 65 FE3 SF4 A 597 1555 1555 2.60 SITE 1 AC1 2 ILE A 49 MG A 595 SITE 1 AC2 3 ASP A 42 ILE A 49 MG A 594 SITE 1 AC3 8 CYS A 29 PRO A 30 ILE A 39 CYS A 55 SITE 2 AC3 8 THR A 56 CYS A 58 GLY A 59 CYS A 61 SITE 1 AC4 7 CYS A 15 ASN A 16 CYS A 20 LEU A 24 SITE 2 AC4 7 CYS A 25 CYS A 65 ILE A 70 SITE 1 AC5 11 TYR A 353 PHE A 356 ASN A 377 GLY A 378 SITE 2 AC5 11 ILE A 379 GLY A 380 LYS A 381 THR A 382 SITE 3 AC5 11 THR A 383 TYR A 421 GLY A 536 SITE 1 AC6 14 TYR A 87 PHE A 92 PRO A 111 ASN A 112 SITE 2 AC6 14 GLY A 113 THR A 114 GLY A 115 LYS A 116 SITE 3 AC6 14 THR A 117 THR A 118 GLY A 292 HOH A 606 SITE 4 AC6 14 HOH A 615 HOH A 620 CRYST1 63.200 63.200 319.380 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003131 0.00000