HEADER VIRAL PROTEIN, MEMBRANE PROTEIN 06-DEC-07 3BKD TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF TRANSMEMBRANE DOMAIN OF M2 TITLE 2 PROTEIN CAVEAT 3BKD BOG A 302 HAS WRONG CHIRALITY AT ATOM C1 BOG A 302 HAS WRONG CAVEAT 2 3BKD CHIRALITY AT ATOM C2 BOG A 302 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 3BKD C4 BOG A 302 HAS WRONG CHIRALITY AT ATOM C5 BOG B 301 HAS CAVEAT 4 3BKD WRONG CHIRALITY AT ATOM C1 BOG B 301 HAS WRONG CHIRALITY AT CAVEAT 5 3BKD ATOM C2 BOG B 301 HAS WRONG CHIRALITY AT ATOM C4 BOG B 301 CAVEAT 6 3BKD HAS WRONG CHIRALITY AT ATOM C5 BOG C 303 HAS WRONG CAVEAT 7 3BKD CHIRALITY AT ATOM C1 BOG C 303 HAS WRONG CHIRALITY AT ATOM CAVEAT 8 3BKD C2 BOG C 303 HAS WRONG CHIRALITY AT ATOM C4 BOG C 303 HAS CAVEAT 9 3BKD WRONG CHIRALITY AT ATOM C5 BOG E 702 HAS WRONG CHIRALITY AT CAVEAT 10 3BKD ATOM C1 BOG E 702 HAS WRONG CHIRALITY AT ATOM C2 BOG E 702 CAVEAT 11 3BKD HAS WRONG CHIRALITY AT ATOM C4 BOG E 702 HAS WRONG CAVEAT 12 3BKD CHIRALITY AT ATOM C5 BOG G 701 HAS WRONG CHIRALITY AT ATOM CAVEAT 13 3BKD C1 BOG G 701 HAS WRONG CHIRALITY AT ATOM C2 BOG G 701 HAS CAVEAT 14 3BKD WRONG CHIRALITY AT ATOM C4 BOG G 701 HAS WRONG CHIRALITY AT CAVEAT 15 3BKD ATOM C5 BOG G 703 HAS WRONG CHIRALITY AT ATOM C1 BOG G 703 CAVEAT 16 3BKD HAS WRONG CHIRALITY AT ATOM C2 BOG G 703 HAS WRONG CAVEAT 17 3BKD CHIRALITY AT ATOM C4 BOG G 703 HAS WRONG CHIRALITY AT ATOM CAVEAT 18 3BKD C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE DOMAIN OF MATRIX PROTEIN M2; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: RESIDUES 22-46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; TRANSMEMBRANE DOMAIN OF M2 SOURCE 4 PROTEIN FROM INFLUENZA A VIRUS KEYWDS PROTON CHANNEL, M2TM, INFLUENZA A VIRUS M2 PROTEIN, VIRAL PROTEIN, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.STOUFFER,R.ACHARYA,D.SALOM REVDAT 7 20-NOV-24 3BKD 1 REMARK REVDAT 6 03-APR-24 3BKD 1 HETSYN REVDAT 5 29-JUL-20 3BKD 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-JUL-11 3BKD 1 VERSN REVDAT 3 24-FEB-09 3BKD 1 VERSN REVDAT 2 22-JUL-08 3BKD 1 JRNL REMARK REVDAT 1 29-JAN-08 3BKD 0 JRNL AUTH A.L.STOUFFER,R.ACHARYA,D.SALOM,A.S.LEVINE,L.DI COSTANZO, JRNL AUTH 2 C.S.SOTO,V.TERESHKO,V.NANDA,S.STAYROOK,W.F.DEGRADO JRNL TITL STRUCTURAL BASIS FOR THE FUNCTION AND INHIBITION OF AN JRNL TITL 2 INFLUENZA VIRUS PROTON CHANNEL JRNL REF NATURE V. 451 596 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18235504 JRNL DOI 10.1038/NATURE06528 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 164 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : -2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1741 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2328 ; 1.348 ; 2.081 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 4.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;37.195 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;13.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1032 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 793 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1216 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 32 ; 0.499 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1058 ; 0.887 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1618 ; 1.147 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 799 ; 1.662 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 710 ; 2.289 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 22 A 47 6 REMARK 3 1 E 22 E 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 190 ; 0.27 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 190 ; 2.76 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 22 B 47 6 REMARK 3 1 F 22 F 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 B (A): 193 ; 0.37 ; 5.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 193 ; 1.29 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : C G REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 22 C 47 6 REMARK 3 1 G 22 G 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 3 C (A): 189 ; 0.29 ; 5.00 REMARK 3 LOOSE THERMAL 3 C (A**2): 189 ; 0.87 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : D H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 22 D 47 6 REMARK 3 1 H 22 H 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 4 D (A): 189 ; 0.32 ; 5.00 REMARK 3 LOOSE THERMAL 4 D (A**2): 189 ; 1.34 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 46 REMARK 3 RESIDUE RANGE : B 22 B 46 REMARK 3 RESIDUE RANGE : C 22 C 46 REMARK 3 RESIDUE RANGE : D 22 D 46 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1479 15.7169 -0.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: -0.0130 REMARK 3 T33: 0.0320 T12: -0.0100 REMARK 3 T13: 0.0017 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1613 L22: 0.9080 REMARK 3 L33: 1.7801 L12: -0.2459 REMARK 3 L13: -0.5197 L23: 0.5549 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.0472 S13: -0.0138 REMARK 3 S21: 0.0951 S22: 0.0106 S23: -0.0882 REMARK 3 S31: -0.1084 S32: 0.0771 S33: -0.0826 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 22 E 46 REMARK 3 RESIDUE RANGE : F 22 F 46 REMARK 3 RESIDUE RANGE : G 22 G 46 REMARK 3 RESIDUE RANGE : H 22 H 46 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0243 11.4201 -28.1435 REMARK 3 T TENSOR REMARK 3 T11: -0.0018 T22: 0.0321 REMARK 3 T33: -0.0126 T12: 0.0143 REMARK 3 T13: -0.0189 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 1.0747 REMARK 3 L33: 2.4881 L12: -0.1010 REMARK 3 L13: -0.6726 L23: -0.4743 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.0390 S13: -0.0272 REMARK 3 S21: -0.0490 S22: 0.0032 S23: 0.0477 REMARK 3 S31: 0.1355 S32: -0.0729 S33: -0.0311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: AMANTANDINE-BOUND M2TM; G34A MUTANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 0.8MM PROTEIN, 32MM REMARK 280 N-OCTYL-BETA-D-GLUCOPYRANOSIDE AND 5%V/V XYLITOL. RESERVOIR REMARK 280 SOLUTION: 50MM TRIS-HCL, 500MM MGCL2, 21% PEG 350 MME, PH 7.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.27850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 26 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 MSE B 33 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU F 26 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU F 46 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 3BKD A 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD B 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD C 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD D 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD E 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD F 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD G 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD H 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 SEQRES 1 A 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 A 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 B 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 B 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 C 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 C 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 D 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 D 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 E 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 E 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 F 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 F 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 G 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 G 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 H 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 H 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 MODRES 3BKD MSE A 33 MET SELENOMETHIONINE MODRES 3BKD MSE B 33 MET SELENOMETHIONINE MODRES 3BKD MSE C 33 MET SELENOMETHIONINE MODRES 3BKD MSE D 33 MET SELENOMETHIONINE MODRES 3BKD MSE E 33 MET SELENOMETHIONINE MODRES 3BKD MSE F 33 MET SELENOMETHIONINE MODRES 3BKD MSE G 33 MET SELENOMETHIONINE MODRES 3BKD MSE H 33 MET SELENOMETHIONINE HET MSE A 33 11 HET NH2 A 47 1 HET MSE B 33 10 HET NH2 B 47 1 HET MSE C 33 12 HET NH2 C 47 1 HET MSE D 33 12 HET NH2 D 47 1 HET MSE E 33 8 HET NH2 E 47 1 HET MSE F 33 12 HET NH2 F 47 1 HET MSE G 33 8 HET NH2 G 47 1 HET MSE H 33 8 HET NH2 H 47 1 HET BOG A 302 20 HET CL A 101 1 HET PEG A 401 7 HET PEG A 803 7 HET BOG B 301 20 HET PEG B 402 7 HET PEG B 403 7 HET BOG C 303 20 HET BOG E 702 20 HET CL E 501 1 HET PEG E 801 7 HET PEG E 802 7 HET BOG G 701 20 HET BOG G 703 20 HETNAM MSE SELENOMETHIONINE HETNAM NH2 AMINO GROUP HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 NH2 8(H2 N) FORMUL 9 BOG 6(C14 H28 O6) FORMUL 10 CL 2(CL 1-) FORMUL 11 PEG 6(C4 H10 O3) FORMUL 23 HOH *39(H2 O) HELIX 1 1 ASP A 24 LEU A 46 1 23 HELIX 2 2 ASP B 24 LEU B 46 1 23 HELIX 3 3 ASP C 24 LEU C 46 1 23 HELIX 4 4 ASP D 24 LEU D 46 1 23 HELIX 5 5 ASP E 24 LEU E 46 1 23 HELIX 6 6 ASP F 24 LEU F 46 1 23 HELIX 7 7 ASP G 24 LEU G 46 1 23 HELIX 8 8 ASP H 24 LEU H 46 1 23 LINK C ILE A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N GLY A 34 1555 1555 1.33 LINK C LEU A 46 N NH2 A 47 1555 1555 1.27 LINK C ILE B 32 N MSE B 33 1555 1555 1.35 LINK C MSE B 33 N GLY B 34 1555 1555 1.33 LINK C LEU B 46 N NH2 B 47 1555 1555 1.26 LINK C ILE C 32 N MSE C 33 1555 1555 1.32 LINK C MSE C 33 N GLY C 34 1555 1555 1.33 LINK C LEU C 46 N NH2 C 47 1555 1555 1.26 LINK C ILE D 32 N MSE D 33 1555 1555 1.34 LINK C MSE D 33 N GLY D 34 1555 1555 1.33 LINK C LEU D 46 N NH2 D 47 1555 1555 1.26 LINK C ILE E 32 N MSE E 33 1555 1555 1.34 LINK C MSE E 33 N GLY E 34 1555 1555 1.33 LINK C LEU E 46 N NH2 E 47 1555 1555 1.27 LINK C ILE F 32 N MSE F 33 1555 1555 1.34 LINK C MSE F 33 N GLY F 34 1555 1555 1.34 LINK C LEU F 46 N NH2 F 47 1555 1555 1.27 LINK C ILE G 32 N MSE G 33 1555 1555 1.33 LINK C MSE G 33 N GLY G 34 1555 1555 1.34 LINK C LEU G 46 N NH2 G 47 1555 1555 1.27 LINK C ILE H 32 N MSE H 33 1555 1555 1.34 LINK C MSE H 33 N GLY H 34 1555 1555 1.34 LINK C LEU H 46 N NH2 H 47 1555 1555 1.26 CRYST1 38.753 56.557 56.009 90.00 103.53 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025804 0.000000 0.006209 0.00000 SCALE2 0.000000 0.017681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018364 0.00000 CONECT 68 74 CONECT 74 68 75 CONECT 75 74 76 78 CONECT 76 75 77 85 CONECT 77 76 CONECT 78 75 79 80 CONECT 79 78 81 CONECT 80 78 82 CONECT 81 79 83 CONECT 82 80 84 CONECT 83 81 CONECT 84 82 CONECT 85 76 CONECT 190 196 CONECT 196 190 CONECT 265 271 CONECT 271 265 272 CONECT 272 271 273 275 CONECT 273 272 274 281 CONECT 274 273 CONECT 275 272 276 CONECT 276 275 277 278 CONECT 277 276 279 CONECT 278 276 280 CONECT 279 277 CONECT 280 278 CONECT 281 273 CONECT 386 392 CONECT 392 386 CONECT 461 467 CONECT 467 461 468 CONECT 468 467 469 471 472 CONECT 469 468 470 479 CONECT 470 469 CONECT 471 468 473 CONECT 472 468 474 CONECT 473 471 475 CONECT 474 472 476 CONECT 475 473 477 CONECT 476 474 478 CONECT 477 475 CONECT 478 476 CONECT 479 469 CONECT 584 590 CONECT 590 584 CONECT 659 665 CONECT 665 659 666 CONECT 666 665 667 669 670 CONECT 667 666 668 677 CONECT 668 667 CONECT 669 666 671 CONECT 670 666 672 CONECT 671 669 673 CONECT 672 670 674 CONECT 673 671 675 CONECT 674 672 676 CONECT 675 673 CONECT 676 674 CONECT 677 667 CONECT 782 788 CONECT 788 782 CONECT 857 863 CONECT 863 857 864 CONECT 864 863 865 867 CONECT 865 864 866 871 CONECT 866 865 CONECT 867 864 868 CONECT 868 867 869 CONECT 869 868 870 CONECT 870 869 CONECT 871 865 CONECT 976 982 CONECT 982 976 CONECT 1051 1057 CONECT 1057 1051 1058 CONECT 1058 1057 1059 1061 1062 CONECT 1059 1058 1060 1069 CONECT 1060 1059 CONECT 1061 1058 1063 CONECT 1062 1058 1064 CONECT 1063 1061 1065 CONECT 1064 1062 1066 CONECT 1065 1063 1067 CONECT 1066 1064 1068 CONECT 1067 1065 CONECT 1068 1066 CONECT 1069 1059 CONECT 1174 1180 CONECT 1180 1174 CONECT 1249 1255 CONECT 1255 1249 1256 CONECT 1256 1255 1257 1259 CONECT 1257 1256 1258 1263 CONECT 1258 1257 CONECT 1259 1256 1260 CONECT 1260 1259 1261 CONECT 1261 1260 1262 CONECT 1262 1261 CONECT 1263 1257 CONECT 1368 1374 CONECT 1374 1368 CONECT 1443 1449 CONECT 1449 1443 1450 CONECT 1450 1449 1451 1453 CONECT 1451 1450 1452 1457 CONECT 1452 1451 CONECT 1453 1450 1454 CONECT 1454 1453 1455 CONECT 1455 1454 1456 CONECT 1456 1455 CONECT 1457 1451 CONECT 1562 1568 CONECT 1568 1562 CONECT 1570 1571 1572 1579 CONECT 1571 1570 1582 CONECT 1572 1570 1573 1574 CONECT 1573 1572 CONECT 1574 1572 1575 1576 CONECT 1575 1574 CONECT 1576 1574 1577 1578 CONECT 1577 1576 CONECT 1578 1576 1579 1580 CONECT 1579 1570 1578 CONECT 1580 1578 1581 CONECT 1581 1580 CONECT 1582 1571 1583 CONECT 1583 1582 1584 CONECT 1584 1583 1585 CONECT 1585 1584 1586 CONECT 1586 1585 1587 CONECT 1587 1586 1588 CONECT 1588 1587 1589 CONECT 1589 1588 CONECT 1591 1592 1593 CONECT 1592 1591 CONECT 1593 1591 1594 CONECT 1594 1593 1595 CONECT 1595 1594 1596 CONECT 1596 1595 1597 CONECT 1597 1596 CONECT 1598 1599 1600 CONECT 1599 1598 CONECT 1600 1598 1601 CONECT 1601 1600 1602 CONECT 1602 1601 1603 CONECT 1603 1602 1604 CONECT 1604 1603 CONECT 1605 1606 1607 1614 CONECT 1606 1605 1617 CONECT 1607 1605 1608 1609 CONECT 1608 1607 CONECT 1609 1607 1610 1611 CONECT 1610 1609 CONECT 1611 1609 1612 1613 CONECT 1612 1611 CONECT 1613 1611 1614 1615 CONECT 1614 1605 1613 CONECT 1615 1613 1616 CONECT 1616 1615 CONECT 1617 1606 1618 CONECT 1618 1617 1619 CONECT 1619 1618 1620 CONECT 1620 1619 1621 CONECT 1621 1620 1622 CONECT 1622 1621 1623 CONECT 1623 1622 1624 CONECT 1624 1623 CONECT 1625 1626 1627 CONECT 1626 1625 CONECT 1627 1625 1628 CONECT 1628 1627 1629 CONECT 1629 1628 1630 CONECT 1630 1629 1631 CONECT 1631 1630 CONECT 1632 1633 1634 CONECT 1633 1632 CONECT 1634 1632 1635 CONECT 1635 1634 1636 CONECT 1636 1635 1637 CONECT 1637 1636 1638 CONECT 1638 1637 CONECT 1639 1640 1641 1648 CONECT 1640 1639 1651 CONECT 1641 1639 1642 1643 CONECT 1642 1641 CONECT 1643 1641 1644 1645 CONECT 1644 1643 CONECT 1645 1643 1646 1647 CONECT 1646 1645 CONECT 1647 1645 1648 1649 CONECT 1648 1639 1647 CONECT 1649 1647 1650 CONECT 1650 1649 CONECT 1651 1640 1652 CONECT 1652 1651 1653 CONECT 1653 1652 1654 CONECT 1654 1653 1655 CONECT 1655 1654 1656 CONECT 1656 1655 1657 CONECT 1657 1656 1658 CONECT 1658 1657 CONECT 1659 1660 1661 1668 CONECT 1660 1659 1671 CONECT 1661 1659 1662 1663 CONECT 1662 1661 CONECT 1663 1661 1664 1665 CONECT 1664 1663 CONECT 1665 1663 1666 1667 CONECT 1666 1665 CONECT 1667 1665 1668 1669 CONECT 1668 1659 1667 CONECT 1669 1667 1670 CONECT 1670 1669 CONECT 1671 1660 1672 CONECT 1672 1671 1673 CONECT 1673 1672 1674 CONECT 1674 1673 1675 CONECT 1675 1674 1676 CONECT 1676 1675 1677 CONECT 1677 1676 1678 CONECT 1678 1677 CONECT 1680 1681 1682 CONECT 1681 1680 CONECT 1682 1680 1683 CONECT 1683 1682 1684 CONECT 1684 1683 1685 CONECT 1685 1684 1686 CONECT 1686 1685 CONECT 1687 1688 1689 CONECT 1688 1687 CONECT 1689 1687 1690 CONECT 1690 1689 1691 CONECT 1691 1690 1692 CONECT 1692 1691 1693 CONECT 1693 1692 CONECT 1694 1695 1696 1703 CONECT 1695 1694 1706 CONECT 1696 1694 1697 1698 CONECT 1697 1696 CONECT 1698 1696 1699 1700 CONECT 1699 1698 CONECT 1700 1698 1701 1702 CONECT 1701 1700 CONECT 1702 1700 1703 1704 CONECT 1703 1694 1702 CONECT 1704 1702 1705 CONECT 1705 1704 CONECT 1706 1695 1707 CONECT 1707 1706 1708 CONECT 1708 1707 1709 CONECT 1709 1708 1710 CONECT 1710 1709 1711 CONECT 1711 1710 1712 CONECT 1712 1711 1713 CONECT 1713 1712 CONECT 1714 1715 1716 1723 CONECT 1715 1714 1726 CONECT 1716 1714 1717 1718 CONECT 1717 1716 CONECT 1718 1716 1719 1720 CONECT 1719 1718 CONECT 1720 1718 1721 1722 CONECT 1721 1720 CONECT 1722 1720 1723 1724 CONECT 1723 1714 1722 CONECT 1724 1722 1725 CONECT 1725 1724 CONECT 1726 1715 1727 CONECT 1727 1726 1728 CONECT 1728 1727 1729 CONECT 1729 1728 1730 CONECT 1730 1729 1731 CONECT 1731 1730 1732 CONECT 1732 1731 1733 CONECT 1733 1732 MASTER 349 0 30 8 0 0 0 6 1747 8 275 16 END