HEADER VIRAL PROTEIN, MEMBRANE PROTEIN 06-DEC-07 3BKD TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF TRANSMEMBRANE DOMAIN OF M2 TITLE 2 PROTEIN CAVEAT 3BKD BOG A 302 HAS WRONG CHIRALITY AT ATOM C1 BOG A 302 HAS WRONG CAVEAT 2 3BKD CHIRALITY AT ATOM C2 BOG A 302 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 3BKD C4 BOG A 302 HAS WRONG CHIRALITY AT ATOM C5 BOG B 301 HAS CAVEAT 4 3BKD WRONG CHIRALITY AT ATOM C1 BOG B 301 HAS WRONG CHIRALITY AT CAVEAT 5 3BKD ATOM C2 BOG B 301 HAS WRONG CHIRALITY AT ATOM C4 BOG B 301 CAVEAT 6 3BKD HAS WRONG CHIRALITY AT ATOM C5 BOG C 303 HAS WRONG CAVEAT 7 3BKD CHIRALITY AT ATOM C1 BOG C 303 HAS WRONG CHIRALITY AT ATOM CAVEAT 8 3BKD C2 BOG C 303 HAS WRONG CHIRALITY AT ATOM C4 BOG C 303 HAS CAVEAT 9 3BKD WRONG CHIRALITY AT ATOM C5 BOG E 702 HAS WRONG CHIRALITY AT CAVEAT 10 3BKD ATOM C1 BOG E 702 HAS WRONG CHIRALITY AT ATOM C2 BOG E 702 CAVEAT 11 3BKD HAS WRONG CHIRALITY AT ATOM C4 BOG E 702 HAS WRONG CAVEAT 12 3BKD CHIRALITY AT ATOM C5 BOG G 701 HAS WRONG CHIRALITY AT ATOM CAVEAT 13 3BKD C1 BOG G 701 HAS WRONG CHIRALITY AT ATOM C2 BOG G 701 HAS CAVEAT 14 3BKD WRONG CHIRALITY AT ATOM C4 BOG G 701 HAS WRONG CHIRALITY AT CAVEAT 15 3BKD ATOM C5 BOG G 703 HAS WRONG CHIRALITY AT ATOM C1 BOG G 703 CAVEAT 16 3BKD HAS WRONG CHIRALITY AT ATOM C2 BOG G 703 HAS WRONG CAVEAT 17 3BKD CHIRALITY AT ATOM C4 BOG G 703 HAS WRONG CHIRALITY AT ATOM CAVEAT 18 3BKD C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE DOMAIN OF MATRIX PROTEIN M2; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: RESIDUES 22-46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; TRANSMEMBRANE DOMAIN OF M2 SOURCE 4 PROTEIN FROM INFLUENZA A VIRUS KEYWDS PROTON CHANNEL, M2TM, INFLUENZA A VIRUS M2 PROTEIN, VIRAL PROTEIN, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.STOUFFER,R.ACHARYA,D.SALOM REVDAT 6 03-APR-24 3BKD 1 HETSYN REVDAT 5 29-JUL-20 3BKD 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-JUL-11 3BKD 1 VERSN REVDAT 3 24-FEB-09 3BKD 1 VERSN REVDAT 2 22-JUL-08 3BKD 1 JRNL REMARK REVDAT 1 29-JAN-08 3BKD 0 JRNL AUTH A.L.STOUFFER,R.ACHARYA,D.SALOM,A.S.LEVINE,L.DI COSTANZO, JRNL AUTH 2 C.S.SOTO,V.TERESHKO,V.NANDA,S.STAYROOK,W.F.DEGRADO JRNL TITL STRUCTURAL BASIS FOR THE FUNCTION AND INHIBITION OF AN JRNL TITL 2 INFLUENZA VIRUS PROTON CHANNEL JRNL REF NATURE V. 451 596 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18235504 JRNL DOI 10.1038/NATURE06528 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 164 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : -2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1741 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2328 ; 1.348 ; 2.081 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 4.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;37.195 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;13.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1032 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 793 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1216 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 32 ; 0.499 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1058 ; 0.887 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1618 ; 1.147 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 799 ; 1.662 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 710 ; 2.289 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 22 A 47 6 REMARK 3 1 E 22 E 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 190 ; 0.27 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 190 ; 2.76 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 22 B 47 6 REMARK 3 1 F 22 F 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 B (A): 193 ; 0.37 ; 5.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 193 ; 1.29 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : C G REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 22 C 47 6 REMARK 3 1 G 22 G 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 3 C (A): 189 ; 0.29 ; 5.00 REMARK 3 LOOSE THERMAL 3 C (A**2): 189 ; 0.87 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : D H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 22 D 47 6 REMARK 3 1 H 22 H 47 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 4 D (A): 189 ; 0.32 ; 5.00 REMARK 3 LOOSE THERMAL 4 D (A**2): 189 ; 1.34 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 46 REMARK 3 RESIDUE RANGE : B 22 B 46 REMARK 3 RESIDUE RANGE : C 22 C 46 REMARK 3 RESIDUE RANGE : D 22 D 46 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1479 15.7169 -0.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: -0.0130 REMARK 3 T33: 0.0320 T12: -0.0100 REMARK 3 T13: 0.0017 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1613 L22: 0.9080 REMARK 3 L33: 1.7801 L12: -0.2459 REMARK 3 L13: -0.5197 L23: 0.5549 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.0472 S13: -0.0138 REMARK 3 S21: 0.0951 S22: 0.0106 S23: -0.0882 REMARK 3 S31: -0.1084 S32: 0.0771 S33: -0.0826 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 22 E 46 REMARK 3 RESIDUE RANGE : F 22 F 46 REMARK 3 RESIDUE RANGE : G 22 G 46 REMARK 3 RESIDUE RANGE : H 22 H 46 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0243 11.4201 -28.1435 REMARK 3 T TENSOR REMARK 3 T11: -0.0018 T22: 0.0321 REMARK 3 T33: -0.0126 T12: 0.0143 REMARK 3 T13: -0.0189 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 1.0747 REMARK 3 L33: 2.4881 L12: -0.1010 REMARK 3 L13: -0.6726 L23: -0.4743 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.0390 S13: -0.0272 REMARK 3 S21: -0.0490 S22: 0.0032 S23: 0.0477 REMARK 3 S31: 0.1355 S32: -0.0729 S33: -0.0311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: AMANTANDINE-BOUND M2TM; G34A MUTANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 0.8MM PROTEIN, 32MM REMARK 280 N-OCTYL-BETA-D-GLUCOPYRANOSIDE AND 5%V/V XYLITOL. RESERVOIR REMARK 280 SOLUTION: 50MM TRIS-HCL, 500MM MGCL2, 21% PEG 350 MME, PH 7.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.27850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 26 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 MSE B 33 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU F 26 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU F 46 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 3BKD A 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD B 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD C 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD D 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD E 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD F 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD G 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 DBREF 3BKD H 22 46 UNP Q9Q0P0 Q9Q0P0_9INFA 22 46 SEQRES 1 A 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 A 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 B 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 B 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 C 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 C 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 D 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 D 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 E 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 E 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 F 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 F 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 G 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 G 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 SEQRES 1 H 26 SER SER ASP PRO LEU VAL VAL ALA ALA SER ILE MSE GLY SEQRES 2 H 26 ILE LEU HIS LEU ILE LEU TRP ILE LEU ASP ARG LEU NH2 MODRES 3BKD MSE A 33 MET SELENOMETHIONINE MODRES 3BKD MSE B 33 MET SELENOMETHIONINE MODRES 3BKD MSE C 33 MET SELENOMETHIONINE MODRES 3BKD MSE D 33 MET SELENOMETHIONINE MODRES 3BKD MSE E 33 MET SELENOMETHIONINE MODRES 3BKD MSE F 33 MET SELENOMETHIONINE MODRES 3BKD MSE G 33 MET SELENOMETHIONINE MODRES 3BKD MSE H 33 MET SELENOMETHIONINE HET MSE A 33 11 HET NH2 A 47 1 HET MSE B 33 10 HET NH2 B 47 1 HET MSE C 33 12 HET NH2 C 47 1 HET MSE D 33 12 HET NH2 D 47 1 HET MSE E 33 8 HET NH2 E 47 1 HET MSE F 33 12 HET NH2 F 47 1 HET MSE G 33 8 HET NH2 G 47 1 HET MSE H 33 8 HET NH2 H 47 1 HET BOG A 302 20 HET CL A 101 1 HET PEG A 401 7 HET PEG A 803 7 HET BOG B 301 20 HET PEG B 402 7 HET PEG B 403 7 HET BOG C 303 20 HET BOG E 702 20 HET CL E 501 1 HET PEG E 801 7 HET PEG E 802 7 HET BOG G 701 20 HET BOG G 703 20 HETNAM MSE SELENOMETHIONINE HETNAM NH2 AMINO GROUP HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 NH2 8(H2 N) FORMUL 9 BOG 6(C14 H28 O6) FORMUL 10 CL 2(CL 1-) FORMUL 11 PEG 6(C4 H10 O3) FORMUL 23 HOH *39(H2 O) HELIX 1 1 ASP A 24 LEU A 46 1 23 HELIX 2 2 ASP B 24 LEU B 46 1 23 HELIX 3 3 ASP C 24 LEU C 46 1 23 HELIX 4 4 ASP D 24 LEU D 46 1 23 HELIX 5 5 ASP E 24 LEU E 46 1 23 HELIX 6 6 ASP F 24 LEU F 46 1 23 HELIX 7 7 ASP G 24 LEU G 46 1 23 HELIX 8 8 ASP H 24 LEU H 46 1 23 LINK C ILE A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N GLY A 34 1555 1555 1.33 LINK C LEU A 46 N NH2 A 47 1555 1555 1.27 LINK C ILE B 32 N MSE B 33 1555 1555 1.35 LINK C MSE B 33 N GLY B 34 1555 1555 1.33 LINK C LEU B 46 N NH2 B 47 1555 1555 1.26 LINK C ILE C 32 N MSE C 33 1555 1555 1.32 LINK C MSE C 33 N GLY C 34 1555 1555 1.33 LINK C LEU C 46 N NH2 C 47 1555 1555 1.26 LINK C ILE D 32 N MSE D 33 1555 1555 1.34 LINK C MSE D 33 N GLY D 34 1555 1555 1.33 LINK C LEU D 46 N NH2 D 47 1555 1555 1.26 LINK C ILE E 32 N MSE E 33 1555 1555 1.34 LINK C MSE E 33 N GLY E 34 1555 1555 1.33 LINK C LEU E 46 N NH2 E 47 1555 1555 1.27 LINK C ILE F 32 N MSE F 33 1555 1555 1.34 LINK C MSE F 33 N GLY F 34 1555 1555 1.34 LINK C LEU F 46 N NH2 F 47 1555 1555 1.27 LINK C ILE G 32 N MSE G 33 1555 1555 1.33 LINK C MSE G 33 N GLY G 34 1555 1555 1.34 LINK C LEU G 46 N NH2 G 47 1555 1555 1.27 LINK C ILE H 32 N MSE H 33 1555 1555 1.34 LINK C MSE H 33 N GLY H 34 1555 1555 1.34 LINK C LEU H 46 N NH2 H 47 1555 1555 1.26 CRYST1 38.753 56.557 56.009 90.00 103.53 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025804 0.000000 0.006209 0.00000 SCALE2 0.000000 0.017681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018364 0.00000