data_3BKH # _entry.id 3BKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BKH RCSB RCSB045631 WWPDB D_1000045631 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3BKV _pdbx_database_related.details 'Structure of the bacteriophage phiKZ lytic transglycosylase in complex with chitotetraose' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3BKH _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fokine, A.' 1 'Miroshnikov, K.A.' 2 'Shneider, M.M.' 3 'Mesyanzhinov, V.V.' 4 'Rossmann, M.G.' 5 # _citation.id primary _citation.title 'Structure of the bacteriophage phi KZ lytic transglycosylase gp144.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 7242 _citation.page_last 7250 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18160394 _citation.pdbx_database_id_DOI 10.1074/jbc.M709398200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fokine, A.' 1 primary 'Miroshnikov, K.A.' 2 primary 'Shneider, M.M.' 3 primary 'Mesyanzhinov, V.V.' 4 primary 'Rossmann, M.G.' 5 # _cell.entry_id 3BKH _cell.length_a 63.167 _cell.length_b 63.167 _cell.length_c 182.019 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BKH _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'lytic transglycosylase' 30173.148 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PHIKZ144 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HHHHHGSI(MSE)KVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSK YSPPIPYKTIP(MSE)PTANKSRAAATPV(MSE)NAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTW KT(MSE)IENYG(MSE)KYGVLTDPTGALRKDPRISAL(MSE)GAELIKEN(MSE)NILRPVLKREPTDTDLYLAHFFGP GAARRFLTTGQNELAATHFPKEAQANPSIFYNKDGSPKTIQEVYNL(MSE)DGKVAAHRK ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHGSIMKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPP IPYKTIPMPTANKSRAAATPVMNAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTWKTMIENYGMKYG VLTDPTGALRKDPRISALMGAELIKENMNILRPVLKREPTDTDLYLAHFFGPGAARRFLTTGQNELAATHFPKEAQANPS IFYNKDGSPKTIQEVYNLMDGKVAAHRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 GLY n 1 7 SER n 1 8 ILE n 1 9 MSE n 1 10 LYS n 1 11 VAL n 1 12 LEU n 1 13 ARG n 1 14 LYS n 1 15 GLY n 1 16 ASP n 1 17 ARG n 1 18 GLY n 1 19 ASP n 1 20 GLU n 1 21 VAL n 1 22 CYS n 1 23 GLN n 1 24 LEU n 1 25 GLN n 1 26 THR n 1 27 LEU n 1 28 LEU n 1 29 ASN n 1 30 LEU n 1 31 CYS n 1 32 GLY n 1 33 TYR n 1 34 ASP n 1 35 VAL n 1 36 GLY n 1 37 LYS n 1 38 PRO n 1 39 ASP n 1 40 GLY n 1 41 ILE n 1 42 PHE n 1 43 GLY n 1 44 ASN n 1 45 ASN n 1 46 THR n 1 47 PHE n 1 48 ASN n 1 49 GLN n 1 50 VAL n 1 51 VAL n 1 52 LYS n 1 53 PHE n 1 54 GLN n 1 55 LYS n 1 56 ASP n 1 57 ASN n 1 58 CYS n 1 59 LEU n 1 60 ASP n 1 61 SER n 1 62 ASP n 1 63 GLY n 1 64 ILE n 1 65 VAL n 1 66 GLY n 1 67 LYS n 1 68 ASN n 1 69 THR n 1 70 TRP n 1 71 ALA n 1 72 GLU n 1 73 LEU n 1 74 PHE n 1 75 SER n 1 76 LYS n 1 77 TYR n 1 78 SER n 1 79 PRO n 1 80 PRO n 1 81 ILE n 1 82 PRO n 1 83 TYR n 1 84 LYS n 1 85 THR n 1 86 ILE n 1 87 PRO n 1 88 MSE n 1 89 PRO n 1 90 THR n 1 91 ALA n 1 92 ASN n 1 93 LYS n 1 94 SER n 1 95 ARG n 1 96 ALA n 1 97 ALA n 1 98 ALA n 1 99 THR n 1 100 PRO n 1 101 VAL n 1 102 MSE n 1 103 ASN n 1 104 ALA n 1 105 VAL n 1 106 GLU n 1 107 ASN n 1 108 ALA n 1 109 THR n 1 110 GLY n 1 111 VAL n 1 112 ARG n 1 113 SER n 1 114 GLN n 1 115 LEU n 1 116 LEU n 1 117 LEU n 1 118 THR n 1 119 PHE n 1 120 ALA n 1 121 SER n 1 122 ILE n 1 123 GLU n 1 124 SER n 1 125 ALA n 1 126 PHE n 1 127 ASP n 1 128 TYR n 1 129 GLU n 1 130 ILE n 1 131 LYS n 1 132 ALA n 1 133 LYS n 1 134 THR n 1 135 SER n 1 136 SER n 1 137 ALA n 1 138 THR n 1 139 GLY n 1 140 TRP n 1 141 PHE n 1 142 GLN n 1 143 PHE n 1 144 LEU n 1 145 THR n 1 146 GLY n 1 147 THR n 1 148 TRP n 1 149 LYS n 1 150 THR n 1 151 MSE n 1 152 ILE n 1 153 GLU n 1 154 ASN n 1 155 TYR n 1 156 GLY n 1 157 MSE n 1 158 LYS n 1 159 TYR n 1 160 GLY n 1 161 VAL n 1 162 LEU n 1 163 THR n 1 164 ASP n 1 165 PRO n 1 166 THR n 1 167 GLY n 1 168 ALA n 1 169 LEU n 1 170 ARG n 1 171 LYS n 1 172 ASP n 1 173 PRO n 1 174 ARG n 1 175 ILE n 1 176 SER n 1 177 ALA n 1 178 LEU n 1 179 MSE n 1 180 GLY n 1 181 ALA n 1 182 GLU n 1 183 LEU n 1 184 ILE n 1 185 LYS n 1 186 GLU n 1 187 ASN n 1 188 MSE n 1 189 ASN n 1 190 ILE n 1 191 LEU n 1 192 ARG n 1 193 PRO n 1 194 VAL n 1 195 LEU n 1 196 LYS n 1 197 ARG n 1 198 GLU n 1 199 PRO n 1 200 THR n 1 201 ASP n 1 202 THR n 1 203 ASP n 1 204 LEU n 1 205 TYR n 1 206 LEU n 1 207 ALA n 1 208 HIS n 1 209 PHE n 1 210 PHE n 1 211 GLY n 1 212 PRO n 1 213 GLY n 1 214 ALA n 1 215 ALA n 1 216 ARG n 1 217 ARG n 1 218 PHE n 1 219 LEU n 1 220 THR n 1 221 THR n 1 222 GLY n 1 223 GLN n 1 224 ASN n 1 225 GLU n 1 226 LEU n 1 227 ALA n 1 228 ALA n 1 229 THR n 1 230 HIS n 1 231 PHE n 1 232 PRO n 1 233 LYS n 1 234 GLU n 1 235 ALA n 1 236 GLN n 1 237 ALA n 1 238 ASN n 1 239 PRO n 1 240 SER n 1 241 ILE n 1 242 PHE n 1 243 TYR n 1 244 ASN n 1 245 LYS n 1 246 ASP n 1 247 GLY n 1 248 SER n 1 249 PRO n 1 250 LYS n 1 251 THR n 1 252 ILE n 1 253 GLN n 1 254 GLU n 1 255 VAL n 1 256 TYR n 1 257 ASN n 1 258 LEU n 1 259 MSE n 1 260 ASP n 1 261 GLY n 1 262 LYS n 1 263 VAL n 1 264 ALA n 1 265 ALA n 1 266 HIS n 1 267 ARG n 1 268 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ORF144 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas phage phiKZ' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169683 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pQE 30' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description Qiagen # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8SD18_9CAUD _struct_ref.pdbx_db_accession Q8SD18 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPPIPYKTIPM PTANKSRAAATPVMNAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTWKTMIENYGMKYGVLTDPTGA LRKDPRISALMGAELIKENMNILRPVLKREPTDTDLYLAHFFGPGAARRFLTTGQNELAATHFPKEAQANPSIFYNKDGS PKTIQEVYNLMDGKVAAHRK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BKH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 268 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8SD18 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 260 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 260 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BKH HIS A 1 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -7 1 1 3BKH HIS A 2 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -6 2 1 3BKH HIS A 3 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -5 3 1 3BKH HIS A 4 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -4 4 1 3BKH HIS A 5 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -3 5 1 3BKH GLY A 6 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -2 6 1 3BKH SER A 7 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' -1 7 1 3BKH ILE A 8 ? UNP Q8SD18 ? ? 'EXPRESSION TAG' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BKH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.47 _exptl_crystal.density_percent_sol 64.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;1.2 M ammonium sulfate, 1.2% (v/v) polyethylene glycol 400, 60 mM HEPES sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9494 1.0 2 0.9794 1.0 3 0.9795 1.0 4 0.9810 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9494 0.9794 0.9795 0.9810' # _reflns.entry_id 3BKH _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.98 _reflns.d_resolution_high 2.50 _reflns.number_obs 14168 _reflns.number_all 14196 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 81 _reflns.B_iso_Wilson_estimate 56.7 _reflns.pdbx_redundancy 11 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.35 _reflns_shell.meanI_over_sigI_obs 15 _reflns_shell.pdbx_redundancy 11 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BKH _refine.ls_number_reflns_obs 14168 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1053233.57 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.98 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.251 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1436 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 60.3 _refine.aniso_B[1][1] 5.93 _refine.aniso_B[2][2] 5.93 _refine.aniso_B[3][3] -11.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 54.5994 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'FLAT BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3BKH _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.45 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2095 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 2163 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 34.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 2098 _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.percent_reflns_obs 99.9 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 10.8 _refine_ls_shell.number_reflns_R_free 254 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 3BKH _struct.title 'Crystal structure of the bacteriophage phiKZ lytic transglycosylase, gp144' _struct.pdbx_descriptor 'lytic transglycosylase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BKH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'transglycosylase, bacteriophage, phiKZ, endolysin, peptidoglycan, cell wall degradation, lysozyme, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 1 ? ILE A 8 ? HIS A -7 ILE A 0 1 ? 8 HELX_P HELX_P2 2 GLY A 18 ? LEU A 30 ? GLY A 10 LEU A 22 1 ? 13 HELX_P HELX_P3 3 GLY A 43 ? ASN A 57 ? GLY A 35 ASN A 49 1 ? 15 HELX_P HELX_P4 4 GLY A 66 ? TYR A 77 ? GLY A 58 TYR A 69 1 ? 12 HELX_P HELX_P5 5 PRO A 82 ? ILE A 86 ? PRO A 74 ILE A 78 5 ? 5 HELX_P HELX_P6 6 SER A 94 ? GLY A 110 ? SER A 86 GLY A 102 1 ? 17 HELX_P HELX_P7 7 ARG A 112 ? ALA A 125 ? ARG A 104 ALA A 117 1 ? 14 HELX_P HELX_P8 8 LEU A 144 ? GLY A 156 ? LEU A 136 GLY A 148 1 ? 13 HELX_P HELX_P9 9 MSE A 157 ? GLY A 160 ? MSE A 149 GLY A 152 5 ? 4 HELX_P HELX_P10 10 GLY A 167 ? LYS A 171 ? GLY A 159 LYS A 163 5 ? 5 HELX_P HELX_P11 11 ASP A 172 ? ARG A 192 ? ASP A 164 ARG A 184 1 ? 21 HELX_P HELX_P12 12 PRO A 193 ? LEU A 195 ? PRO A 185 LEU A 187 5 ? 3 HELX_P HELX_P13 13 THR A 200 ? GLY A 211 ? THR A 192 GLY A 203 1 ? 12 HELX_P HELX_P14 14 GLY A 211 ? LEU A 219 ? GLY A 203 LEU A 211 1 ? 9 HELX_P HELX_P15 15 LEU A 226 ? PHE A 231 ? LEU A 218 PHE A 223 1 ? 6 HELX_P HELX_P16 16 PHE A 231 ? ASN A 238 ? PHE A 223 ASN A 230 1 ? 8 HELX_P HELX_P17 17 ASN A 238 ? TYR A 243 ? ASN A 230 TYR A 235 1 ? 6 HELX_P HELX_P18 18 THR A 251 ? ALA A 265 ? THR A 243 ALA A 257 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 8 C ? ? ? 1_555 A MSE 9 N ? ? A ILE 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 9 C ? ? ? 1_555 A LYS 10 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A PRO 87 C ? ? ? 1_555 A MSE 88 N ? ? A PRO 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 88 C ? ? ? 1_555 A PRO 89 N ? ? A MSE 80 A PRO 81 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale ? ? A VAL 101 C ? ? ? 1_555 A MSE 102 N ? ? A VAL 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 102 C ? ? ? 1_555 A ASN 103 N ? ? A MSE 94 A ASN 95 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? A THR 150 C ? ? ? 1_555 A MSE 151 N ? ? A THR 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? A MSE 151 C ? ? ? 1_555 A ILE 152 N ? ? A MSE 143 A ILE 144 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale ? ? A GLY 156 C ? ? ? 1_555 A MSE 157 N ? ? A GLY 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? A MSE 157 C ? ? ? 1_555 A LYS 158 N ? ? A MSE 149 A LYS 150 1_555 ? ? ? ? ? ? ? 1.325 ? covale11 covale ? ? A LEU 178 C ? ? ? 1_555 A MSE 179 N ? ? A LEU 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 179 C ? ? ? 1_555 A GLY 180 N ? ? A MSE 171 A GLY 172 1_555 ? ? ? ? ? ? ? 1.337 ? covale13 covale ? ? A ASN 187 C ? ? ? 1_555 A MSE 188 N ? ? A ASN 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? A MSE 188 C ? ? ? 1_555 A ASN 189 N ? ? A MSE 180 A ASN 181 1_555 ? ? ? ? ? ? ? 1.326 ? covale15 covale ? ? A LEU 258 C ? ? ? 1_555 A MSE 259 N ? ? A LEU 250 A MSE 251 1_555 ? ? ? ? ? ? ? 1.334 ? covale16 covale ? ? A MSE 259 C ? ? ? 1_555 A ASP 260 N ? ? A MSE 251 A ASP 252 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE NI A 501' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 GLY A 66 ? GLY A 58 . ? 1_555 ? 2 AC2 2 LYS A 67 ? LYS A 59 . ? 1_555 ? 3 AC2 2 ASN A 68 ? ASN A 60 . ? 1_555 ? # _atom_sites.entry_id 3BKH _atom_sites.fract_transf_matrix[1][1] 0.015831 _atom_sites.fract_transf_matrix[1][2] 0.009140 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018280 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005494 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -7 -7 HIS HIS A . n A 1 2 HIS 2 -6 -6 HIS HIS A . n A 1 3 HIS 3 -5 -5 HIS HIS A . n A 1 4 HIS 4 -4 -4 HIS HIS A . n A 1 5 HIS 5 -3 -3 HIS HIS A . n A 1 6 GLY 6 -2 -2 GLY GLY A . n A 1 7 SER 7 -1 -1 SER SER A . n A 1 8 ILE 8 0 0 ILE ILE A . n A 1 9 MSE 9 1 1 MSE MSE A . n A 1 10 LYS 10 2 2 LYS LYS A . n A 1 11 VAL 11 3 3 VAL VAL A . n A 1 12 LEU 12 4 4 LEU LEU A . n A 1 13 ARG 13 5 5 ARG ARG A . n A 1 14 LYS 14 6 6 LYS LYS A . n A 1 15 GLY 15 7 7 GLY GLY A . n A 1 16 ASP 16 8 8 ASP ASP A . n A 1 17 ARG 17 9 9 ARG ARG A . n A 1 18 GLY 18 10 10 GLY GLY A . n A 1 19 ASP 19 11 11 ASP ASP A . n A 1 20 GLU 20 12 12 GLU GLU A . n A 1 21 VAL 21 13 13 VAL VAL A . n A 1 22 CYS 22 14 14 CYS CYS A . n A 1 23 GLN 23 15 15 GLN GLN A . n A 1 24 LEU 24 16 16 LEU LEU A . n A 1 25 GLN 25 17 17 GLN GLN A . n A 1 26 THR 26 18 18 THR THR A . n A 1 27 LEU 27 19 19 LEU LEU A . n A 1 28 LEU 28 20 20 LEU LEU A . n A 1 29 ASN 29 21 21 ASN ASN A . n A 1 30 LEU 30 22 22 LEU LEU A . n A 1 31 CYS 31 23 23 CYS CYS A . n A 1 32 GLY 32 24 24 GLY GLY A . n A 1 33 TYR 33 25 25 TYR TYR A . n A 1 34 ASP 34 26 26 ASP ASP A . n A 1 35 VAL 35 27 27 VAL VAL A . n A 1 36 GLY 36 28 28 GLY GLY A . n A 1 37 LYS 37 29 29 LYS LYS A . n A 1 38 PRO 38 30 30 PRO PRO A . n A 1 39 ASP 39 31 31 ASP ASP A . n A 1 40 GLY 40 32 32 GLY GLY A . n A 1 41 ILE 41 33 33 ILE ILE A . n A 1 42 PHE 42 34 34 PHE PHE A . n A 1 43 GLY 43 35 35 GLY GLY A . n A 1 44 ASN 44 36 36 ASN ASN A . n A 1 45 ASN 45 37 37 ASN ASN A . n A 1 46 THR 46 38 38 THR THR A . n A 1 47 PHE 47 39 39 PHE PHE A . n A 1 48 ASN 48 40 40 ASN ASN A . n A 1 49 GLN 49 41 41 GLN GLN A . n A 1 50 VAL 50 42 42 VAL VAL A . n A 1 51 VAL 51 43 43 VAL VAL A . n A 1 52 LYS 52 44 44 LYS LYS A . n A 1 53 PHE 53 45 45 PHE PHE A . n A 1 54 GLN 54 46 46 GLN GLN A . n A 1 55 LYS 55 47 47 LYS LYS A . n A 1 56 ASP 56 48 48 ASP ASP A . n A 1 57 ASN 57 49 49 ASN ASN A . n A 1 58 CYS 58 50 50 CYS CYS A . n A 1 59 LEU 59 51 51 LEU LEU A . n A 1 60 ASP 60 52 52 ASP ASP A . n A 1 61 SER 61 53 53 SER SER A . n A 1 62 ASP 62 54 54 ASP ASP A . n A 1 63 GLY 63 55 55 GLY GLY A . n A 1 64 ILE 64 56 56 ILE ILE A . n A 1 65 VAL 65 57 57 VAL VAL A . n A 1 66 GLY 66 58 58 GLY GLY A . n A 1 67 LYS 67 59 59 LYS LYS A . n A 1 68 ASN 68 60 60 ASN ASN A . n A 1 69 THR 69 61 61 THR THR A . n A 1 70 TRP 70 62 62 TRP TRP A . n A 1 71 ALA 71 63 63 ALA ALA A . n A 1 72 GLU 72 64 64 GLU GLU A . n A 1 73 LEU 73 65 65 LEU LEU A . n A 1 74 PHE 74 66 66 PHE PHE A . n A 1 75 SER 75 67 67 SER SER A . n A 1 76 LYS 76 68 68 LYS LYS A . n A 1 77 TYR 77 69 69 TYR TYR A . n A 1 78 SER 78 70 70 SER SER A . n A 1 79 PRO 79 71 71 PRO PRO A . n A 1 80 PRO 80 72 72 PRO PRO A . n A 1 81 ILE 81 73 73 ILE ILE A . n A 1 82 PRO 82 74 74 PRO PRO A . n A 1 83 TYR 83 75 75 TYR TYR A . n A 1 84 LYS 84 76 76 LYS LYS A . n A 1 85 THR 85 77 77 THR THR A . n A 1 86 ILE 86 78 78 ILE ILE A . n A 1 87 PRO 87 79 79 PRO PRO A . n A 1 88 MSE 88 80 80 MSE MSE A . n A 1 89 PRO 89 81 81 PRO PRO A . n A 1 90 THR 90 82 82 THR THR A . n A 1 91 ALA 91 83 83 ALA ALA A . n A 1 92 ASN 92 84 84 ASN ASN A . n A 1 93 LYS 93 85 85 LYS LYS A . n A 1 94 SER 94 86 86 SER SER A . n A 1 95 ARG 95 87 87 ARG ARG A . n A 1 96 ALA 96 88 88 ALA ALA A . n A 1 97 ALA 97 89 89 ALA ALA A . n A 1 98 ALA 98 90 90 ALA ALA A . n A 1 99 THR 99 91 91 THR THR A . n A 1 100 PRO 100 92 92 PRO PRO A . n A 1 101 VAL 101 93 93 VAL VAL A . n A 1 102 MSE 102 94 94 MSE MSE A . n A 1 103 ASN 103 95 95 ASN ASN A . n A 1 104 ALA 104 96 96 ALA ALA A . n A 1 105 VAL 105 97 97 VAL VAL A . n A 1 106 GLU 106 98 98 GLU GLU A . n A 1 107 ASN 107 99 99 ASN ASN A . n A 1 108 ALA 108 100 100 ALA ALA A . n A 1 109 THR 109 101 101 THR THR A . n A 1 110 GLY 110 102 102 GLY GLY A . n A 1 111 VAL 111 103 103 VAL VAL A . n A 1 112 ARG 112 104 104 ARG ARG A . n A 1 113 SER 113 105 105 SER SER A . n A 1 114 GLN 114 106 106 GLN GLN A . n A 1 115 LEU 115 107 107 LEU LEU A . n A 1 116 LEU 116 108 108 LEU LEU A . n A 1 117 LEU 117 109 109 LEU LEU A . n A 1 118 THR 118 110 110 THR THR A . n A 1 119 PHE 119 111 111 PHE PHE A . n A 1 120 ALA 120 112 112 ALA ALA A . n A 1 121 SER 121 113 113 SER SER A . n A 1 122 ILE 122 114 114 ILE ILE A . n A 1 123 GLU 123 115 115 GLU GLU A . n A 1 124 SER 124 116 116 SER SER A . n A 1 125 ALA 125 117 117 ALA ALA A . n A 1 126 PHE 126 118 118 PHE PHE A . n A 1 127 ASP 127 119 119 ASP ASP A . n A 1 128 TYR 128 120 120 TYR TYR A . n A 1 129 GLU 129 121 121 GLU GLU A . n A 1 130 ILE 130 122 122 ILE ILE A . n A 1 131 LYS 131 123 123 LYS LYS A . n A 1 132 ALA 132 124 124 ALA ALA A . n A 1 133 LYS 133 125 125 LYS LYS A . n A 1 134 THR 134 126 126 THR THR A . n A 1 135 SER 135 127 127 SER SER A . n A 1 136 SER 136 128 128 SER SER A . n A 1 137 ALA 137 129 129 ALA ALA A . n A 1 138 THR 138 130 130 THR THR A . n A 1 139 GLY 139 131 131 GLY GLY A . n A 1 140 TRP 140 132 132 TRP TRP A . n A 1 141 PHE 141 133 133 PHE PHE A . n A 1 142 GLN 142 134 134 GLN GLN A . n A 1 143 PHE 143 135 135 PHE PHE A . n A 1 144 LEU 144 136 136 LEU LEU A . n A 1 145 THR 145 137 137 THR THR A . n A 1 146 GLY 146 138 138 GLY GLY A . n A 1 147 THR 147 139 139 THR THR A . n A 1 148 TRP 148 140 140 TRP TRP A . n A 1 149 LYS 149 141 141 LYS LYS A . n A 1 150 THR 150 142 142 THR THR A . n A 1 151 MSE 151 143 143 MSE MSE A . n A 1 152 ILE 152 144 144 ILE ILE A . n A 1 153 GLU 153 145 145 GLU GLU A . n A 1 154 ASN 154 146 146 ASN ASN A . n A 1 155 TYR 155 147 147 TYR TYR A . n A 1 156 GLY 156 148 148 GLY GLY A . n A 1 157 MSE 157 149 149 MSE MSE A . n A 1 158 LYS 158 150 150 LYS LYS A . n A 1 159 TYR 159 151 151 TYR TYR A . n A 1 160 GLY 160 152 152 GLY GLY A . n A 1 161 VAL 161 153 153 VAL VAL A . n A 1 162 LEU 162 154 154 LEU LEU A . n A 1 163 THR 163 155 155 THR THR A . n A 1 164 ASP 164 156 156 ASP ASP A . n A 1 165 PRO 165 157 157 PRO PRO A . n A 1 166 THR 166 158 158 THR THR A . n A 1 167 GLY 167 159 159 GLY GLY A . n A 1 168 ALA 168 160 160 ALA ALA A . n A 1 169 LEU 169 161 161 LEU LEU A . n A 1 170 ARG 170 162 162 ARG ARG A . n A 1 171 LYS 171 163 163 LYS LYS A . n A 1 172 ASP 172 164 164 ASP ASP A . n A 1 173 PRO 173 165 165 PRO PRO A . n A 1 174 ARG 174 166 166 ARG ARG A . n A 1 175 ILE 175 167 167 ILE ILE A . n A 1 176 SER 176 168 168 SER SER A . n A 1 177 ALA 177 169 169 ALA ALA A . n A 1 178 LEU 178 170 170 LEU LEU A . n A 1 179 MSE 179 171 171 MSE MSE A . n A 1 180 GLY 180 172 172 GLY GLY A . n A 1 181 ALA 181 173 173 ALA ALA A . n A 1 182 GLU 182 174 174 GLU GLU A . n A 1 183 LEU 183 175 175 LEU LEU A . n A 1 184 ILE 184 176 176 ILE ILE A . n A 1 185 LYS 185 177 177 LYS LYS A . n A 1 186 GLU 186 178 178 GLU GLU A . n A 1 187 ASN 187 179 179 ASN ASN A . n A 1 188 MSE 188 180 180 MSE MSE A . n A 1 189 ASN 189 181 181 ASN ASN A . n A 1 190 ILE 190 182 182 ILE ILE A . n A 1 191 LEU 191 183 183 LEU LEU A . n A 1 192 ARG 192 184 184 ARG ARG A . n A 1 193 PRO 193 185 185 PRO PRO A . n A 1 194 VAL 194 186 186 VAL VAL A . n A 1 195 LEU 195 187 187 LEU LEU A . n A 1 196 LYS 196 188 188 LYS LYS A . n A 1 197 ARG 197 189 189 ARG ARG A . n A 1 198 GLU 198 190 190 GLU GLU A . n A 1 199 PRO 199 191 191 PRO PRO A . n A 1 200 THR 200 192 192 THR THR A . n A 1 201 ASP 201 193 193 ASP ASP A . n A 1 202 THR 202 194 194 THR THR A . n A 1 203 ASP 203 195 195 ASP ASP A . n A 1 204 LEU 204 196 196 LEU LEU A . n A 1 205 TYR 205 197 197 TYR TYR A . n A 1 206 LEU 206 198 198 LEU LEU A . n A 1 207 ALA 207 199 199 ALA ALA A . n A 1 208 HIS 208 200 200 HIS HIS A . n A 1 209 PHE 209 201 201 PHE PHE A . n A 1 210 PHE 210 202 202 PHE PHE A . n A 1 211 GLY 211 203 203 GLY GLY A . n A 1 212 PRO 212 204 204 PRO PRO A . n A 1 213 GLY 213 205 205 GLY GLY A . n A 1 214 ALA 214 206 206 ALA ALA A . n A 1 215 ALA 215 207 207 ALA ALA A . n A 1 216 ARG 216 208 208 ARG ARG A . n A 1 217 ARG 217 209 209 ARG ARG A . n A 1 218 PHE 218 210 210 PHE PHE A . n A 1 219 LEU 219 211 211 LEU LEU A . n A 1 220 THR 220 212 212 THR THR A . n A 1 221 THR 221 213 213 THR THR A . n A 1 222 GLY 222 214 214 GLY GLY A . n A 1 223 GLN 223 215 215 GLN GLN A . n A 1 224 ASN 224 216 216 ASN ASN A . n A 1 225 GLU 225 217 217 GLU GLU A . n A 1 226 LEU 226 218 218 LEU LEU A . n A 1 227 ALA 227 219 219 ALA ALA A . n A 1 228 ALA 228 220 220 ALA ALA A . n A 1 229 THR 229 221 221 THR THR A . n A 1 230 HIS 230 222 222 HIS HIS A . n A 1 231 PHE 231 223 223 PHE PHE A . n A 1 232 PRO 232 224 224 PRO PRO A . n A 1 233 LYS 233 225 225 LYS LYS A . n A 1 234 GLU 234 226 226 GLU GLU A . n A 1 235 ALA 235 227 227 ALA ALA A . n A 1 236 GLN 236 228 228 GLN GLN A . n A 1 237 ALA 237 229 229 ALA ALA A . n A 1 238 ASN 238 230 230 ASN ASN A . n A 1 239 PRO 239 231 231 PRO PRO A . n A 1 240 SER 240 232 232 SER SER A . n A 1 241 ILE 241 233 233 ILE ILE A . n A 1 242 PHE 242 234 234 PHE PHE A . n A 1 243 TYR 243 235 235 TYR TYR A . n A 1 244 ASN 244 236 236 ASN ASN A . n A 1 245 LYS 245 237 237 LYS LYS A . n A 1 246 ASP 246 238 238 ASP ASP A . n A 1 247 GLY 247 239 239 GLY GLY A . n A 1 248 SER 248 240 240 SER SER A . n A 1 249 PRO 249 241 241 PRO PRO A . n A 1 250 LYS 250 242 242 LYS LYS A . n A 1 251 THR 251 243 243 THR THR A . n A 1 252 ILE 252 244 244 ILE ILE A . n A 1 253 GLN 253 245 245 GLN GLN A . n A 1 254 GLU 254 246 246 GLU GLU A . n A 1 255 VAL 255 247 247 VAL VAL A . n A 1 256 TYR 256 248 248 TYR TYR A . n A 1 257 ASN 257 249 249 ASN ASN A . n A 1 258 LEU 258 250 250 LEU LEU A . n A 1 259 MSE 259 251 251 MSE MSE A . n A 1 260 ASP 260 252 252 ASP ASP A . n A 1 261 GLY 261 253 253 GLY GLY A . n A 1 262 LYS 262 254 254 LYS LYS A . n A 1 263 VAL 263 255 255 VAL VAL A . n A 1 264 ALA 264 256 256 ALA ALA A . n A 1 265 ALA 265 257 257 ALA ALA A . n A 1 266 HIS 266 258 258 HIS HIS A . n A 1 267 ARG 267 259 259 ARG ARG A . n A 1 268 LYS 268 260 260 LYS LYS A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 9 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 88 A MSE 80 ? MET SELENOMETHIONINE 3 A MSE 102 A MSE 94 ? MET SELENOMETHIONINE 4 A MSE 151 A MSE 143 ? MET SELENOMETHIONINE 5 A MSE 157 A MSE 149 ? MET SELENOMETHIONINE 6 A MSE 179 A MSE 171 ? MET SELENOMETHIONINE 7 A MSE 188 A MSE 180 ? MET SELENOMETHIONINE 8 A MSE 259 A MSE 251 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-08 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SOLVE phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 85 ? ? 57.59 18.30 2 1 SER A 116 ? ? -141.17 10.19 3 1 SER A 127 ? ? -167.55 -160.28 4 1 ALA A 129 ? ? -21.27 110.79 5 1 VAL A 186 ? ? -111.01 68.26 6 1 LEU A 187 ? ? -178.29 113.86 7 1 LEU A 211 ? ? -52.36 -7.81 8 1 ASN A 216 ? ? -89.61 46.66 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 501 501 NI NI A . C 3 SO4 1 502 502 SO4 SO4 A . D 4 HOH 1 503 503 HOH HOH A . D 4 HOH 2 504 504 HOH HOH A . D 4 HOH 3 505 505 HOH HOH A . D 4 HOH 4 506 506 HOH HOH A . D 4 HOH 5 507 507 HOH HOH A . D 4 HOH 6 508 508 HOH HOH A . D 4 HOH 7 509 509 HOH HOH A . D 4 HOH 8 510 510 HOH HOH A . D 4 HOH 9 511 511 HOH HOH A . D 4 HOH 10 512 512 HOH HOH A . D 4 HOH 11 513 513 HOH HOH A . D 4 HOH 12 514 514 HOH HOH A . D 4 HOH 13 515 515 HOH HOH A . D 4 HOH 14 516 516 HOH HOH A . D 4 HOH 15 517 517 HOH HOH A . D 4 HOH 16 518 518 HOH HOH A . D 4 HOH 17 519 519 HOH HOH A . D 4 HOH 18 520 520 HOH HOH A . D 4 HOH 19 521 521 HOH HOH A . D 4 HOH 20 522 522 HOH HOH A . D 4 HOH 21 523 523 HOH HOH A . D 4 HOH 22 524 524 HOH HOH A . D 4 HOH 23 525 525 HOH HOH A . D 4 HOH 24 526 526 HOH HOH A . D 4 HOH 25 527 527 HOH HOH A . D 4 HOH 26 528 528 HOH HOH A . D 4 HOH 27 529 529 HOH HOH A . D 4 HOH 28 530 530 HOH HOH A . D 4 HOH 29 531 531 HOH HOH A . D 4 HOH 30 532 532 HOH HOH A . D 4 HOH 31 533 533 HOH HOH A . D 4 HOH 32 534 534 HOH HOH A . D 4 HOH 33 535 535 HOH HOH A . D 4 HOH 34 536 536 HOH HOH A . D 4 HOH 35 537 537 HOH HOH A . D 4 HOH 36 538 538 HOH HOH A . D 4 HOH 37 539 539 HOH HOH A . D 4 HOH 38 540 540 HOH HOH A . D 4 HOH 39 541 541 HOH HOH A . D 4 HOH 40 542 542 HOH HOH A . D 4 HOH 41 543 543 HOH HOH A . D 4 HOH 42 544 544 HOH HOH A . D 4 HOH 43 545 545 HOH HOH A . D 4 HOH 44 546 546 HOH HOH A . D 4 HOH 45 547 547 HOH HOH A . D 4 HOH 46 548 548 HOH HOH A . D 4 HOH 47 549 549 HOH HOH A . D 4 HOH 48 550 550 HOH HOH A . D 4 HOH 49 551 551 HOH HOH A . D 4 HOH 50 552 552 HOH HOH A . D 4 HOH 51 553 553 HOH HOH A . D 4 HOH 52 554 554 HOH HOH A . D 4 HOH 53 555 555 HOH HOH A . D 4 HOH 54 556 556 HOH HOH A . D 4 HOH 55 557 557 HOH HOH A . D 4 HOH 56 558 558 HOH HOH A . D 4 HOH 57 559 559 HOH HOH A . D 4 HOH 58 560 560 HOH HOH A . D 4 HOH 59 561 561 HOH HOH A . D 4 HOH 60 562 562 HOH HOH A . D 4 HOH 61 563 563 HOH HOH A . D 4 HOH 62 564 564 HOH HOH A . #