data_3BKV # _entry.id 3BKV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BKV pdb_00003bkv 10.2210/pdb3bkv/pdb RCSB RCSB045645 ? ? WWPDB D_1000045645 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3BKH _pdbx_database_related.details 'Structure of the bacteriophage phiKZ lytic transglycosylase' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3BKV _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-07 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fokine, A.' 1 'Miroshnikov, K.A.' 2 'Shneider, M.M.' 3 'Mesyanzhinov, V.V.' 4 'Rossmann, M.G.' 5 # _citation.id primary _citation.title 'Structure of the bacteriophage phi KZ lytic transglycosylase gp144.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 7242 _citation.page_last 7250 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18160394 _citation.pdbx_database_id_DOI 10.1074/jbc.M709398200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fokine, A.' 1 ? primary 'Miroshnikov, K.A.' 2 ? primary 'Shneider, M.M.' 3 ? primary 'Mesyanzhinov, V.V.' 4 ? primary 'Rossmann, M.G.' 5 ? # _cell.entry_id 3BKV _cell.length_a 62.322 _cell.length_b 62.322 _cell.length_c 182.643 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BKV _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'lytic transglycosylase' 30173.148 1 ? ? ? 'in complex with chitotetraose, NAG4' 2 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 830.786 1 ? ? ? ? 3 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 10 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PHIKZ144 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HHHHHGSI(MSE)KVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSK YSPPIPYKTIP(MSE)PTANKSRAAATPV(MSE)NAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTW KT(MSE)IENYG(MSE)KYGVLTDPTGALRKDPRISAL(MSE)GAELIKEN(MSE)NILRPVLKREPTDTDLYLAHFFGP GAARRFLTTGQNELAATHFPKEAQANPSIFYNKDGSPKTIQEVYNL(MSE)DGKVAAHRK ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHGSIMKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPP IPYKTIPMPTANKSRAAATPVMNAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTWKTMIENYGMKYG VLTDPTGALRKDPRISALMGAELIKENMNILRPVLKREPTDTDLYLAHFFGPGAARRFLTTGQNELAATHFPKEAQANPS IFYNKDGSPKTIQEVYNLMDGKVAAHRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 GLY n 1 7 SER n 1 8 ILE n 1 9 MSE n 1 10 LYS n 1 11 VAL n 1 12 LEU n 1 13 ARG n 1 14 LYS n 1 15 GLY n 1 16 ASP n 1 17 ARG n 1 18 GLY n 1 19 ASP n 1 20 GLU n 1 21 VAL n 1 22 CYS n 1 23 GLN n 1 24 LEU n 1 25 GLN n 1 26 THR n 1 27 LEU n 1 28 LEU n 1 29 ASN n 1 30 LEU n 1 31 CYS n 1 32 GLY n 1 33 TYR n 1 34 ASP n 1 35 VAL n 1 36 GLY n 1 37 LYS n 1 38 PRO n 1 39 ASP n 1 40 GLY n 1 41 ILE n 1 42 PHE n 1 43 GLY n 1 44 ASN n 1 45 ASN n 1 46 THR n 1 47 PHE n 1 48 ASN n 1 49 GLN n 1 50 VAL n 1 51 VAL n 1 52 LYS n 1 53 PHE n 1 54 GLN n 1 55 LYS n 1 56 ASP n 1 57 ASN n 1 58 CYS n 1 59 LEU n 1 60 ASP n 1 61 SER n 1 62 ASP n 1 63 GLY n 1 64 ILE n 1 65 VAL n 1 66 GLY n 1 67 LYS n 1 68 ASN n 1 69 THR n 1 70 TRP n 1 71 ALA n 1 72 GLU n 1 73 LEU n 1 74 PHE n 1 75 SER n 1 76 LYS n 1 77 TYR n 1 78 SER n 1 79 PRO n 1 80 PRO n 1 81 ILE n 1 82 PRO n 1 83 TYR n 1 84 LYS n 1 85 THR n 1 86 ILE n 1 87 PRO n 1 88 MSE n 1 89 PRO n 1 90 THR n 1 91 ALA n 1 92 ASN n 1 93 LYS n 1 94 SER n 1 95 ARG n 1 96 ALA n 1 97 ALA n 1 98 ALA n 1 99 THR n 1 100 PRO n 1 101 VAL n 1 102 MSE n 1 103 ASN n 1 104 ALA n 1 105 VAL n 1 106 GLU n 1 107 ASN n 1 108 ALA n 1 109 THR n 1 110 GLY n 1 111 VAL n 1 112 ARG n 1 113 SER n 1 114 GLN n 1 115 LEU n 1 116 LEU n 1 117 LEU n 1 118 THR n 1 119 PHE n 1 120 ALA n 1 121 SER n 1 122 ILE n 1 123 GLU n 1 124 SER n 1 125 ALA n 1 126 PHE n 1 127 ASP n 1 128 TYR n 1 129 GLU n 1 130 ILE n 1 131 LYS n 1 132 ALA n 1 133 LYS n 1 134 THR n 1 135 SER n 1 136 SER n 1 137 ALA n 1 138 THR n 1 139 GLY n 1 140 TRP n 1 141 PHE n 1 142 GLN n 1 143 PHE n 1 144 LEU n 1 145 THR n 1 146 GLY n 1 147 THR n 1 148 TRP n 1 149 LYS n 1 150 THR n 1 151 MSE n 1 152 ILE n 1 153 GLU n 1 154 ASN n 1 155 TYR n 1 156 GLY n 1 157 MSE n 1 158 LYS n 1 159 TYR n 1 160 GLY n 1 161 VAL n 1 162 LEU n 1 163 THR n 1 164 ASP n 1 165 PRO n 1 166 THR n 1 167 GLY n 1 168 ALA n 1 169 LEU n 1 170 ARG n 1 171 LYS n 1 172 ASP n 1 173 PRO n 1 174 ARG n 1 175 ILE n 1 176 SER n 1 177 ALA n 1 178 LEU n 1 179 MSE n 1 180 GLY n 1 181 ALA n 1 182 GLU n 1 183 LEU n 1 184 ILE n 1 185 LYS n 1 186 GLU n 1 187 ASN n 1 188 MSE n 1 189 ASN n 1 190 ILE n 1 191 LEU n 1 192 ARG n 1 193 PRO n 1 194 VAL n 1 195 LEU n 1 196 LYS n 1 197 ARG n 1 198 GLU n 1 199 PRO n 1 200 THR n 1 201 ASP n 1 202 THR n 1 203 ASP n 1 204 LEU n 1 205 TYR n 1 206 LEU n 1 207 ALA n 1 208 HIS n 1 209 PHE n 1 210 PHE n 1 211 GLY n 1 212 PRO n 1 213 GLY n 1 214 ALA n 1 215 ALA n 1 216 ARG n 1 217 ARG n 1 218 PHE n 1 219 LEU n 1 220 THR n 1 221 THR n 1 222 GLY n 1 223 GLN n 1 224 ASN n 1 225 GLU n 1 226 LEU n 1 227 ALA n 1 228 ALA n 1 229 THR n 1 230 HIS n 1 231 PHE n 1 232 PRO n 1 233 LYS n 1 234 GLU n 1 235 ALA n 1 236 GLN n 1 237 ALA n 1 238 ASN n 1 239 PRO n 1 240 SER n 1 241 ILE n 1 242 PHE n 1 243 TYR n 1 244 ASN n 1 245 LYS n 1 246 ASP n 1 247 GLY n 1 248 SER n 1 249 PRO n 1 250 LYS n 1 251 THR n 1 252 ILE n 1 253 GLN n 1 254 GLU n 1 255 VAL n 1 256 TYR n 1 257 ASN n 1 258 LEU n 1 259 MSE n 1 260 ASP n 1 261 GLY n 1 262 LYS n 1 263 VAL n 1 264 ALA n 1 265 ALA n 1 266 HIS n 1 267 ARG n 1 268 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ORF144 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas phage phiKZ' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169683 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pQE 30' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description Qiagen # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8SD18_9CAUD _struct_ref.pdbx_db_accession Q8SD18 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPPIPYKTIPM PTANKSRAAATPVMNAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTWKTMIENYGMKYGVLTDPTGA LRKDPRISALMGAELIKENMNILRPVLKREPTDTDLYLAHFFGPGAARRFLTTGQNELAATHFPKEAQANPSIFYNKDGS PKTIQEVYNLMDGKVAAHRK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BKV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 268 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8SD18 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 260 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 260 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BKV HIS A 1 ? UNP Q8SD18 ? ? 'expression tag' -7 1 1 3BKV HIS A 2 ? UNP Q8SD18 ? ? 'expression tag' -6 2 1 3BKV HIS A 3 ? UNP Q8SD18 ? ? 'expression tag' -5 3 1 3BKV HIS A 4 ? UNP Q8SD18 ? ? 'expression tag' -4 4 1 3BKV HIS A 5 ? UNP Q8SD18 ? ? 'expression tag' -3 5 1 3BKV GLY A 6 ? UNP Q8SD18 ? ? 'expression tag' -2 6 1 3BKV SER A 7 ? UNP Q8SD18 ? ? 'expression tag' -1 7 1 3BKV ILE A 8 ? UNP Q8SD18 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BKV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.39 _exptl_crystal.density_percent_sol 63.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;1.2% (v/v) polyethylene glycol 400, 60 mM HEPES sodium, pH 7.5. Presence of DTT (5mM) in the protein solution was important for crystallization, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-05-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3BKV _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.39 _reflns.d_resolution_high 2.60 _reflns.number_obs 12279 _reflns.number_all 12316 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.077 _reflns.pdbx_netI_over_sigmaI 45.6 _reflns.B_iso_Wilson_estimate 47.4 _reflns.pdbx_redundancy 8.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.255 _reflns_shell.meanI_over_sigI_obs 14 _reflns_shell.pdbx_redundancy 8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BKV _refine.ls_number_reflns_obs 12279 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1036457.47 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.39 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.272 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1262 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48.3 _refine.aniso_B[1][1] -1.99 _refine.aniso_B[2][2] -1.99 _refine.aniso_B[3][3] 3.99 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 51.807 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'FLAT BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'Structure of the phiKZ gp144 (PDB code 3BKH)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3BKV _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2095 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 2168 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 40.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.88 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 1829 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.293 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 9.8 _refine_ls_shell.number_reflns_R_free 198 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' # _struct.entry_id 3BKV _struct.title 'X-ray structure of the bacteriophage phiKZ lytic transglycosylase, gp144, in complex with chitotetraose, (NAG)4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BKV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'bacteriophage, phiKZ, gp144, transglycosylase, peptidoglycan, cell wall degradation, lysozyme, TRANSFERASE, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 1 ? MSE A 9 ? HIS A -7 MSE A 1 1 ? 9 HELX_P HELX_P2 2 GLY A 18 ? CYS A 31 ? GLY A 10 CYS A 23 1 ? 14 HELX_P HELX_P3 3 GLY A 43 ? ASN A 57 ? GLY A 35 ASN A 49 1 ? 15 HELX_P HELX_P4 4 GLY A 66 ? TYR A 77 ? GLY A 58 TYR A 69 1 ? 12 HELX_P HELX_P5 5 PRO A 82 ? ILE A 86 ? PRO A 74 ILE A 78 5 ? 5 HELX_P HELX_P6 6 SER A 94 ? GLY A 110 ? SER A 86 GLY A 102 1 ? 17 HELX_P HELX_P7 7 ARG A 112 ? ALA A 125 ? ARG A 104 ALA A 117 1 ? 14 HELX_P HELX_P8 8 LEU A 144 ? GLY A 156 ? LEU A 136 GLY A 148 1 ? 13 HELX_P HELX_P9 9 MSE A 157 ? GLY A 160 ? MSE A 149 GLY A 152 5 ? 4 HELX_P HELX_P10 10 GLY A 167 ? LYS A 171 ? GLY A 159 LYS A 163 5 ? 5 HELX_P HELX_P11 11 ASP A 172 ? LEU A 195 ? ASP A 164 LEU A 187 1 ? 24 HELX_P HELX_P12 12 THR A 200 ? GLY A 211 ? THR A 192 GLY A 203 1 ? 12 HELX_P HELX_P13 13 GLY A 211 ? LEU A 219 ? GLY A 203 LEU A 211 1 ? 9 HELX_P HELX_P14 14 LEU A 226 ? PHE A 231 ? LEU A 218 PHE A 223 1 ? 6 HELX_P HELX_P15 15 PHE A 231 ? ASN A 238 ? PHE A 223 ASN A 230 1 ? 8 HELX_P HELX_P16 16 ASN A 238 ? TYR A 243 ? ASN A 230 TYR A 235 1 ? 6 HELX_P HELX_P17 17 THR A 251 ? ALA A 265 ? THR A 243 ALA A 257 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 8 C ? ? ? 1_555 A MSE 9 N ? ? A ILE 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A MSE 9 C ? ? ? 1_555 A LYS 10 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A PRO 87 C ? ? ? 1_555 A MSE 88 N ? ? A PRO 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MSE 88 C ? ? ? 1_555 A PRO 89 N ? ? A MSE 80 A PRO 81 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? A VAL 101 C ? ? ? 1_555 A MSE 102 N ? ? A VAL 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 102 C ? ? ? 1_555 A ASN 103 N ? ? A MSE 94 A ASN 95 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A THR 150 C ? ? ? 1_555 A MSE 151 N ? ? A THR 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? A MSE 151 C ? ? ? 1_555 A ILE 152 N ? ? A MSE 143 A ILE 144 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A GLY 156 C ? ? ? 1_555 A MSE 157 N ? ? A GLY 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? A MSE 157 C ? ? ? 1_555 A LYS 158 N ? ? A MSE 149 A LYS 150 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? A LEU 178 C ? ? ? 1_555 A MSE 179 N ? ? A LEU 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? A MSE 179 C ? ? ? 1_555 A GLY 180 N ? ? A MSE 171 A GLY 172 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? A ASN 187 C ? ? ? 1_555 A MSE 188 N ? ? A ASN 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? A MSE 188 C ? ? ? 1_555 A ASN 189 N ? ? A MSE 180 A ASN 181 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? A LEU 258 C ? ? ? 1_555 A MSE 259 N ? ? A LEU 250 A MSE 251 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale16 covale both ? A MSE 259 C ? ? ? 1_555 A ASP 260 N ? ? A MSE 251 A ASP 252 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale17 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale18 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale19 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 3 B NAG 4 1_555 ? ? ? ? ? ? ? 1.379 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3BKV _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018528 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005475 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -7 -7 HIS HIS A . n A 1 2 HIS 2 -6 -6 HIS HIS A . n A 1 3 HIS 3 -5 -5 HIS HIS A . n A 1 4 HIS 4 -4 -4 HIS HIS A . n A 1 5 HIS 5 -3 -3 HIS HIS A . n A 1 6 GLY 6 -2 -2 GLY GLY A . n A 1 7 SER 7 -1 -1 SER SER A . n A 1 8 ILE 8 0 0 ILE ILE A . n A 1 9 MSE 9 1 1 MSE MSE A . n A 1 10 LYS 10 2 2 LYS LYS A . n A 1 11 VAL 11 3 3 VAL VAL A . n A 1 12 LEU 12 4 4 LEU LEU A . n A 1 13 ARG 13 5 5 ARG ARG A . n A 1 14 LYS 14 6 6 LYS LYS A . n A 1 15 GLY 15 7 7 GLY GLY A . n A 1 16 ASP 16 8 8 ASP ASP A . n A 1 17 ARG 17 9 9 ARG ARG A . n A 1 18 GLY 18 10 10 GLY GLY A . n A 1 19 ASP 19 11 11 ASP ASP A . n A 1 20 GLU 20 12 12 GLU GLU A . n A 1 21 VAL 21 13 13 VAL VAL A . n A 1 22 CYS 22 14 14 CYS CYS A . n A 1 23 GLN 23 15 15 GLN GLN A . n A 1 24 LEU 24 16 16 LEU LEU A . n A 1 25 GLN 25 17 17 GLN GLN A . n A 1 26 THR 26 18 18 THR THR A . n A 1 27 LEU 27 19 19 LEU LEU A . n A 1 28 LEU 28 20 20 LEU LEU A . n A 1 29 ASN 29 21 21 ASN ASN A . n A 1 30 LEU 30 22 22 LEU LEU A . n A 1 31 CYS 31 23 23 CYS CYS A . n A 1 32 GLY 32 24 24 GLY GLY A . n A 1 33 TYR 33 25 25 TYR TYR A . n A 1 34 ASP 34 26 26 ASP ASP A . n A 1 35 VAL 35 27 27 VAL VAL A . n A 1 36 GLY 36 28 28 GLY GLY A . n A 1 37 LYS 37 29 29 LYS LYS A . n A 1 38 PRO 38 30 30 PRO PRO A . n A 1 39 ASP 39 31 31 ASP ASP A . n A 1 40 GLY 40 32 32 GLY GLY A . n A 1 41 ILE 41 33 33 ILE ILE A . n A 1 42 PHE 42 34 34 PHE PHE A . n A 1 43 GLY 43 35 35 GLY GLY A . n A 1 44 ASN 44 36 36 ASN ASN A . n A 1 45 ASN 45 37 37 ASN ASN A . n A 1 46 THR 46 38 38 THR THR A . n A 1 47 PHE 47 39 39 PHE PHE A . n A 1 48 ASN 48 40 40 ASN ASN A . n A 1 49 GLN 49 41 41 GLN GLN A . n A 1 50 VAL 50 42 42 VAL VAL A . n A 1 51 VAL 51 43 43 VAL VAL A . n A 1 52 LYS 52 44 44 LYS LYS A . n A 1 53 PHE 53 45 45 PHE PHE A . n A 1 54 GLN 54 46 46 GLN GLN A . n A 1 55 LYS 55 47 47 LYS LYS A . n A 1 56 ASP 56 48 48 ASP ASP A . n A 1 57 ASN 57 49 49 ASN ASN A . n A 1 58 CYS 58 50 50 CYS CYS A . n A 1 59 LEU 59 51 51 LEU LEU A . n A 1 60 ASP 60 52 52 ASP ASP A . n A 1 61 SER 61 53 53 SER SER A . n A 1 62 ASP 62 54 54 ASP ASP A . n A 1 63 GLY 63 55 55 GLY GLY A . n A 1 64 ILE 64 56 56 ILE ILE A . n A 1 65 VAL 65 57 57 VAL VAL A . n A 1 66 GLY 66 58 58 GLY GLY A . n A 1 67 LYS 67 59 59 LYS LYS A . n A 1 68 ASN 68 60 60 ASN ASN A . n A 1 69 THR 69 61 61 THR THR A . n A 1 70 TRP 70 62 62 TRP TRP A . n A 1 71 ALA 71 63 63 ALA ALA A . n A 1 72 GLU 72 64 64 GLU GLU A . n A 1 73 LEU 73 65 65 LEU LEU A . n A 1 74 PHE 74 66 66 PHE PHE A . n A 1 75 SER 75 67 67 SER SER A . n A 1 76 LYS 76 68 68 LYS LYS A . n A 1 77 TYR 77 69 69 TYR TYR A . n A 1 78 SER 78 70 70 SER SER A . n A 1 79 PRO 79 71 71 PRO PRO A . n A 1 80 PRO 80 72 72 PRO PRO A . n A 1 81 ILE 81 73 73 ILE ILE A . n A 1 82 PRO 82 74 74 PRO PRO A . n A 1 83 TYR 83 75 75 TYR TYR A . n A 1 84 LYS 84 76 76 LYS LYS A . n A 1 85 THR 85 77 77 THR THR A . n A 1 86 ILE 86 78 78 ILE ILE A . n A 1 87 PRO 87 79 79 PRO PRO A . n A 1 88 MSE 88 80 80 MSE MSE A . n A 1 89 PRO 89 81 81 PRO PRO A . n A 1 90 THR 90 82 82 THR THR A . n A 1 91 ALA 91 83 83 ALA ALA A . n A 1 92 ASN 92 84 84 ASN ASN A . n A 1 93 LYS 93 85 85 LYS LYS A . n A 1 94 SER 94 86 86 SER SER A . n A 1 95 ARG 95 87 87 ARG ARG A . n A 1 96 ALA 96 88 88 ALA ALA A . n A 1 97 ALA 97 89 89 ALA ALA A . n A 1 98 ALA 98 90 90 ALA ALA A . n A 1 99 THR 99 91 91 THR THR A . n A 1 100 PRO 100 92 92 PRO PRO A . n A 1 101 VAL 101 93 93 VAL VAL A . n A 1 102 MSE 102 94 94 MSE MSE A . n A 1 103 ASN 103 95 95 ASN ASN A . n A 1 104 ALA 104 96 96 ALA ALA A . n A 1 105 VAL 105 97 97 VAL VAL A . n A 1 106 GLU 106 98 98 GLU GLU A . n A 1 107 ASN 107 99 99 ASN ASN A . n A 1 108 ALA 108 100 100 ALA ALA A . n A 1 109 THR 109 101 101 THR THR A . n A 1 110 GLY 110 102 102 GLY GLY A . n A 1 111 VAL 111 103 103 VAL VAL A . n A 1 112 ARG 112 104 104 ARG ARG A . n A 1 113 SER 113 105 105 SER SER A . n A 1 114 GLN 114 106 106 GLN GLN A . n A 1 115 LEU 115 107 107 LEU LEU A . n A 1 116 LEU 116 108 108 LEU LEU A . n A 1 117 LEU 117 109 109 LEU LEU A . n A 1 118 THR 118 110 110 THR THR A . n A 1 119 PHE 119 111 111 PHE PHE A . n A 1 120 ALA 120 112 112 ALA ALA A . n A 1 121 SER 121 113 113 SER SER A . n A 1 122 ILE 122 114 114 ILE ILE A . n A 1 123 GLU 123 115 115 GLU GLU A . n A 1 124 SER 124 116 116 SER SER A . n A 1 125 ALA 125 117 117 ALA ALA A . n A 1 126 PHE 126 118 118 PHE PHE A . n A 1 127 ASP 127 119 119 ASP ASP A . n A 1 128 TYR 128 120 120 TYR TYR A . n A 1 129 GLU 129 121 121 GLU GLU A . n A 1 130 ILE 130 122 122 ILE ILE A . n A 1 131 LYS 131 123 123 LYS LYS A . n A 1 132 ALA 132 124 124 ALA ALA A . n A 1 133 LYS 133 125 125 LYS LYS A . n A 1 134 THR 134 126 126 THR THR A . n A 1 135 SER 135 127 127 SER SER A . n A 1 136 SER 136 128 128 SER SER A . n A 1 137 ALA 137 129 129 ALA ALA A . n A 1 138 THR 138 130 130 THR THR A . n A 1 139 GLY 139 131 131 GLY GLY A . n A 1 140 TRP 140 132 132 TRP TRP A . n A 1 141 PHE 141 133 133 PHE PHE A . n A 1 142 GLN 142 134 134 GLN GLN A . n A 1 143 PHE 143 135 135 PHE PHE A . n A 1 144 LEU 144 136 136 LEU LEU A . n A 1 145 THR 145 137 137 THR THR A . n A 1 146 GLY 146 138 138 GLY GLY A . n A 1 147 THR 147 139 139 THR THR A . n A 1 148 TRP 148 140 140 TRP TRP A . n A 1 149 LYS 149 141 141 LYS LYS A . n A 1 150 THR 150 142 142 THR THR A . n A 1 151 MSE 151 143 143 MSE MSE A . n A 1 152 ILE 152 144 144 ILE ILE A . n A 1 153 GLU 153 145 145 GLU GLU A . n A 1 154 ASN 154 146 146 ASN ASN A . n A 1 155 TYR 155 147 147 TYR TYR A . n A 1 156 GLY 156 148 148 GLY GLY A . n A 1 157 MSE 157 149 149 MSE MSE A . n A 1 158 LYS 158 150 150 LYS LYS A . n A 1 159 TYR 159 151 151 TYR TYR A . n A 1 160 GLY 160 152 152 GLY GLY A . n A 1 161 VAL 161 153 153 VAL VAL A . n A 1 162 LEU 162 154 154 LEU LEU A . n A 1 163 THR 163 155 155 THR THR A . n A 1 164 ASP 164 156 156 ASP ASP A . n A 1 165 PRO 165 157 157 PRO PRO A . n A 1 166 THR 166 158 158 THR THR A . n A 1 167 GLY 167 159 159 GLY GLY A . n A 1 168 ALA 168 160 160 ALA ALA A . n A 1 169 LEU 169 161 161 LEU LEU A . n A 1 170 ARG 170 162 162 ARG ARG A . n A 1 171 LYS 171 163 163 LYS LYS A . n A 1 172 ASP 172 164 164 ASP ASP A . n A 1 173 PRO 173 165 165 PRO PRO A . n A 1 174 ARG 174 166 166 ARG ARG A . n A 1 175 ILE 175 167 167 ILE ILE A . n A 1 176 SER 176 168 168 SER SER A . n A 1 177 ALA 177 169 169 ALA ALA A . n A 1 178 LEU 178 170 170 LEU LEU A . n A 1 179 MSE 179 171 171 MSE MSE A . n A 1 180 GLY 180 172 172 GLY GLY A . n A 1 181 ALA 181 173 173 ALA ALA A . n A 1 182 GLU 182 174 174 GLU GLU A . n A 1 183 LEU 183 175 175 LEU LEU A . n A 1 184 ILE 184 176 176 ILE ILE A . n A 1 185 LYS 185 177 177 LYS LYS A . n A 1 186 GLU 186 178 178 GLU GLU A . n A 1 187 ASN 187 179 179 ASN ASN A . n A 1 188 MSE 188 180 180 MSE MSE A . n A 1 189 ASN 189 181 181 ASN ASN A . n A 1 190 ILE 190 182 182 ILE ILE A . n A 1 191 LEU 191 183 183 LEU LEU A . n A 1 192 ARG 192 184 184 ARG ARG A . n A 1 193 PRO 193 185 185 PRO PRO A . n A 1 194 VAL 194 186 186 VAL VAL A . n A 1 195 LEU 195 187 187 LEU LEU A . n A 1 196 LYS 196 188 188 LYS LYS A . n A 1 197 ARG 197 189 189 ARG ARG A . n A 1 198 GLU 198 190 190 GLU GLU A . n A 1 199 PRO 199 191 191 PRO PRO A . n A 1 200 THR 200 192 192 THR THR A . n A 1 201 ASP 201 193 193 ASP ASP A . n A 1 202 THR 202 194 194 THR THR A . n A 1 203 ASP 203 195 195 ASP ASP A . n A 1 204 LEU 204 196 196 LEU LEU A . n A 1 205 TYR 205 197 197 TYR TYR A . n A 1 206 LEU 206 198 198 LEU LEU A . n A 1 207 ALA 207 199 199 ALA ALA A . n A 1 208 HIS 208 200 200 HIS HIS A . n A 1 209 PHE 209 201 201 PHE PHE A . n A 1 210 PHE 210 202 202 PHE PHE A . n A 1 211 GLY 211 203 203 GLY GLY A . n A 1 212 PRO 212 204 204 PRO PRO A . n A 1 213 GLY 213 205 205 GLY GLY A . n A 1 214 ALA 214 206 206 ALA ALA A . n A 1 215 ALA 215 207 207 ALA ALA A . n A 1 216 ARG 216 208 208 ARG ARG A . n A 1 217 ARG 217 209 209 ARG ARG A . n A 1 218 PHE 218 210 210 PHE PHE A . n A 1 219 LEU 219 211 211 LEU LEU A . n A 1 220 THR 220 212 212 THR THR A . n A 1 221 THR 221 213 213 THR THR A . n A 1 222 GLY 222 214 214 GLY GLY A . n A 1 223 GLN 223 215 215 GLN GLN A . n A 1 224 ASN 224 216 216 ASN ASN A . n A 1 225 GLU 225 217 217 GLU GLU A . n A 1 226 LEU 226 218 218 LEU LEU A . n A 1 227 ALA 227 219 219 ALA ALA A . n A 1 228 ALA 228 220 220 ALA ALA A . n A 1 229 THR 229 221 221 THR THR A . n A 1 230 HIS 230 222 222 HIS HIS A . n A 1 231 PHE 231 223 223 PHE PHE A . n A 1 232 PRO 232 224 224 PRO PRO A . n A 1 233 LYS 233 225 225 LYS LYS A . n A 1 234 GLU 234 226 226 GLU GLU A . n A 1 235 ALA 235 227 227 ALA ALA A . n A 1 236 GLN 236 228 228 GLN GLN A . n A 1 237 ALA 237 229 229 ALA ALA A . n A 1 238 ASN 238 230 230 ASN ASN A . n A 1 239 PRO 239 231 231 PRO PRO A . n A 1 240 SER 240 232 232 SER SER A . n A 1 241 ILE 241 233 233 ILE ILE A . n A 1 242 PHE 242 234 234 PHE PHE A . n A 1 243 TYR 243 235 235 TYR TYR A . n A 1 244 ASN 244 236 236 ASN ASN A . n A 1 245 LYS 245 237 237 LYS LYS A . n A 1 246 ASP 246 238 238 ASP ASP A . n A 1 247 GLY 247 239 239 GLY GLY A . n A 1 248 SER 248 240 240 SER SER A . n A 1 249 PRO 249 241 241 PRO PRO A . n A 1 250 LYS 250 242 242 LYS LYS A . n A 1 251 THR 251 243 243 THR THR A . n A 1 252 ILE 252 244 244 ILE ILE A . n A 1 253 GLN 253 245 245 GLN GLN A . n A 1 254 GLU 254 246 246 GLU GLU A . n A 1 255 VAL 255 247 247 VAL VAL A . n A 1 256 TYR 256 248 248 TYR TYR A . n A 1 257 ASN 257 249 249 ASN ASN A . n A 1 258 LEU 258 250 250 LEU LEU A . n A 1 259 MSE 259 251 251 MSE MSE A . n A 1 260 ASP 260 252 252 ASP ASP A . n A 1 261 GLY 261 253 253 GLY GLY A . n A 1 262 LYS 262 254 254 LYS LYS A . n A 1 263 VAL 263 255 255 VAL VAL A . n A 1 264 ALA 264 256 256 ALA ALA A . n A 1 265 ALA 265 257 257 ALA ALA A . n A 1 266 HIS 266 258 258 HIS HIS A . n A 1 267 ARG 267 259 259 ARG ARG A . n A 1 268 LYS 268 260 260 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI 1 601 601 NI NI A . D 4 SO4 1 602 602 SO4 SO4 A . E 5 HOH 1 603 603 HOH HOH A . E 5 HOH 2 604 604 HOH HOH A . E 5 HOH 3 605 605 HOH HOH A . E 5 HOH 4 606 606 HOH HOH A . E 5 HOH 5 607 607 HOH HOH A . E 5 HOH 6 608 608 HOH HOH A . E 5 HOH 7 609 609 HOH HOH A . E 5 HOH 8 610 610 HOH HOH A . E 5 HOH 9 611 611 HOH HOH A . E 5 HOH 10 612 612 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 9 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 88 A MSE 80 ? MET SELENOMETHIONINE 3 A MSE 102 A MSE 94 ? MET SELENOMETHIONINE 4 A MSE 151 A MSE 143 ? MET SELENOMETHIONINE 5 A MSE 157 A MSE 149 ? MET SELENOMETHIONINE 6 A MSE 179 A MSE 171 ? MET SELENOMETHIONINE 7 A MSE 188 A MSE 180 ? MET SELENOMETHIONINE 8 A MSE 259 A MSE 251 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-08-30 5 'Structure model' 2 2 2023-11-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' 12 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' struct_asym 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_ref_seq_dif 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen 18 4 'Structure model' chem_comp 19 4 'Structure model' chem_comp_atom 20 4 'Structure model' chem_comp_bond 21 4 'Structure model' database_2 22 4 'Structure model' pdbx_initial_refinement_model 23 5 'Structure model' chem_comp_atom 24 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_seq_id' 8 3 'Structure model' '_atom_site.label_asym_id' 9 3 'Structure model' '_atom_site.label_atom_id' 10 3 'Structure model' '_atom_site.type_symbol' 11 3 'Structure model' '_chem_comp.name' 12 3 'Structure model' '_chem_comp.type' 13 3 'Structure model' '_entity.formula_weight' 14 3 'Structure model' '_entity.pdbx_description' 15 3 'Structure model' '_entity.pdbx_number_of_molecules' 16 3 'Structure model' '_entity.type' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 3 'Structure model' '_struct_ref_seq_dif.details' 35 4 'Structure model' '_chem_comp.pdbx_synonyms' 36 4 'Structure model' '_database_2.pdbx_DOI' 37 4 'Structure model' '_database_2.pdbx_database_accession' 38 5 'Structure model' '_chem_comp_atom.atom_id' 39 5 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement 1.2 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing 1.2 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 52 ? ? -55.44 101.51 2 1 ALA A 83 ? ? -177.63 143.05 3 1 SER A 116 ? ? -148.98 13.08 4 1 SER A 127 ? ? -161.87 -156.01 5 1 ALA A 129 ? ? -20.28 119.19 6 1 GLN A 134 ? ? 38.69 54.84 7 1 ASP A 156 ? ? -159.02 66.67 8 1 LYS A 188 ? ? -70.00 47.69 9 1 LEU A 211 ? ? -65.02 0.36 10 1 PHE A 223 ? ? -143.92 56.06 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MSE N N N N 230 MSE CA C N S 231 MSE C C N N 232 MSE O O N N 233 MSE OXT O N N 234 MSE CB C N N 235 MSE CG C N N 236 MSE SE SE N N 237 MSE CE C N N 238 MSE H H N N 239 MSE H2 H N N 240 MSE HA H N N 241 MSE HXT H N N 242 MSE HB2 H N N 243 MSE HB3 H N N 244 MSE HG2 H N N 245 MSE HG3 H N N 246 MSE HE1 H N N 247 MSE HE2 H N N 248 MSE HE3 H N N 249 NAG C1 C N R 250 NAG C2 C N R 251 NAG C3 C N R 252 NAG C4 C N S 253 NAG C5 C N R 254 NAG C6 C N N 255 NAG C7 C N N 256 NAG C8 C N N 257 NAG N2 N N N 258 NAG O1 O N N 259 NAG O3 O N N 260 NAG O4 O N N 261 NAG O5 O N N 262 NAG O6 O N N 263 NAG O7 O N N 264 NAG H1 H N N 265 NAG H2 H N N 266 NAG H3 H N N 267 NAG H4 H N N 268 NAG H5 H N N 269 NAG H61 H N N 270 NAG H62 H N N 271 NAG H81 H N N 272 NAG H82 H N N 273 NAG H83 H N N 274 NAG HN2 H N N 275 NAG HO1 H N N 276 NAG HO3 H N N 277 NAG HO4 H N N 278 NAG HO6 H N N 279 NI NI NI N N 280 PHE N N N N 281 PHE CA C N S 282 PHE C C N N 283 PHE O O N N 284 PHE CB C N N 285 PHE CG C Y N 286 PHE CD1 C Y N 287 PHE CD2 C Y N 288 PHE CE1 C Y N 289 PHE CE2 C Y N 290 PHE CZ C Y N 291 PHE OXT O N N 292 PHE H H N N 293 PHE H2 H N N 294 PHE HA H N N 295 PHE HB2 H N N 296 PHE HB3 H N N 297 PHE HD1 H N N 298 PHE HD2 H N N 299 PHE HE1 H N N 300 PHE HE2 H N N 301 PHE HZ H N N 302 PHE HXT H N N 303 PRO N N N N 304 PRO CA C N S 305 PRO C C N N 306 PRO O O N N 307 PRO CB C N N 308 PRO CG C N N 309 PRO CD C N N 310 PRO OXT O N N 311 PRO H H N N 312 PRO HA H N N 313 PRO HB2 H N N 314 PRO HB3 H N N 315 PRO HG2 H N N 316 PRO HG3 H N N 317 PRO HD2 H N N 318 PRO HD3 H N N 319 PRO HXT H N N 320 SER N N N N 321 SER CA C N S 322 SER C C N N 323 SER O O N N 324 SER CB C N N 325 SER OG O N N 326 SER OXT O N N 327 SER H H N N 328 SER H2 H N N 329 SER HA H N N 330 SER HB2 H N N 331 SER HB3 H N N 332 SER HG H N N 333 SER HXT H N N 334 SO4 S S N N 335 SO4 O1 O N N 336 SO4 O2 O N N 337 SO4 O3 O N N 338 SO4 O4 O N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MSE N CA sing N N 218 MSE N H sing N N 219 MSE N H2 sing N N 220 MSE CA C sing N N 221 MSE CA CB sing N N 222 MSE CA HA sing N N 223 MSE C O doub N N 224 MSE C OXT sing N N 225 MSE OXT HXT sing N N 226 MSE CB CG sing N N 227 MSE CB HB2 sing N N 228 MSE CB HB3 sing N N 229 MSE CG SE sing N N 230 MSE CG HG2 sing N N 231 MSE CG HG3 sing N N 232 MSE SE CE sing N N 233 MSE CE HE1 sing N N 234 MSE CE HE2 sing N N 235 MSE CE HE3 sing N N 236 NAG C1 C2 sing N N 237 NAG C1 O1 sing N N 238 NAG C1 O5 sing N N 239 NAG C1 H1 sing N N 240 NAG C2 C3 sing N N 241 NAG C2 N2 sing N N 242 NAG C2 H2 sing N N 243 NAG C3 C4 sing N N 244 NAG C3 O3 sing N N 245 NAG C3 H3 sing N N 246 NAG C4 C5 sing N N 247 NAG C4 O4 sing N N 248 NAG C4 H4 sing N N 249 NAG C5 C6 sing N N 250 NAG C5 O5 sing N N 251 NAG C5 H5 sing N N 252 NAG C6 O6 sing N N 253 NAG C6 H61 sing N N 254 NAG C6 H62 sing N N 255 NAG C7 C8 sing N N 256 NAG C7 N2 sing N N 257 NAG C7 O7 doub N N 258 NAG C8 H81 sing N N 259 NAG C8 H82 sing N N 260 NAG C8 H83 sing N N 261 NAG N2 HN2 sing N N 262 NAG O1 HO1 sing N N 263 NAG O3 HO3 sing N N 264 NAG O4 HO4 sing N N 265 NAG O6 HO6 sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 SO4 S O1 doub N N 320 SO4 S O2 doub N N 321 SO4 S O3 sing N N 322 SO4 S O4 sing N N 323 THR N CA sing N N 324 THR N H sing N N 325 THR N H2 sing N N 326 THR CA C sing N N 327 THR CA CB sing N N 328 THR CA HA sing N N 329 THR C O doub N N 330 THR C OXT sing N N 331 THR CB OG1 sing N N 332 THR CB CG2 sing N N 333 THR CB HB sing N N 334 THR OG1 HG1 sing N N 335 THR CG2 HG21 sing N N 336 THR CG2 HG22 sing N N 337 THR CG2 HG23 sing N N 338 THR OXT HXT sing N N 339 TRP N CA sing N N 340 TRP N H sing N N 341 TRP N H2 sing N N 342 TRP CA C sing N N 343 TRP CA CB sing N N 344 TRP CA HA sing N N 345 TRP C O doub N N 346 TRP C OXT sing N N 347 TRP CB CG sing N N 348 TRP CB HB2 sing N N 349 TRP CB HB3 sing N N 350 TRP CG CD1 doub Y N 351 TRP CG CD2 sing Y N 352 TRP CD1 NE1 sing Y N 353 TRP CD1 HD1 sing N N 354 TRP CD2 CE2 doub Y N 355 TRP CD2 CE3 sing Y N 356 TRP NE1 CE2 sing Y N 357 TRP NE1 HE1 sing N N 358 TRP CE2 CZ2 sing Y N 359 TRP CE3 CZ3 doub Y N 360 TRP CE3 HE3 sing N N 361 TRP CZ2 CH2 doub Y N 362 TRP CZ2 HZ2 sing N N 363 TRP CZ3 CH2 sing Y N 364 TRP CZ3 HZ3 sing N N 365 TRP CH2 HH2 sing N N 366 TRP OXT HXT sing N N 367 TYR N CA sing N N 368 TYR N H sing N N 369 TYR N H2 sing N N 370 TYR CA C sing N N 371 TYR CA CB sing N N 372 TYR CA HA sing N N 373 TYR C O doub N N 374 TYR C OXT sing N N 375 TYR CB CG sing N N 376 TYR CB HB2 sing N N 377 TYR CB HB3 sing N N 378 TYR CG CD1 doub Y N 379 TYR CG CD2 sing Y N 380 TYR CD1 CE1 sing Y N 381 TYR CD1 HD1 sing N N 382 TYR CD2 CE2 doub Y N 383 TYR CD2 HD2 sing N N 384 TYR CE1 CZ doub Y N 385 TYR CE1 HE1 sing N N 386 TYR CE2 CZ sing Y N 387 TYR CE2 HE2 sing N N 388 TYR CZ OH sing N N 389 TYR OH HH sing N N 390 TYR OXT HXT sing N N 391 VAL N CA sing N N 392 VAL N H sing N N 393 VAL N H2 sing N N 394 VAL CA C sing N N 395 VAL CA CB sing N N 396 VAL CA HA sing N N 397 VAL C O doub N N 398 VAL C OXT sing N N 399 VAL CB CG1 sing N N 400 VAL CB CG2 sing N N 401 VAL CB HB sing N N 402 VAL CG1 HG11 sing N N 403 VAL CG1 HG12 sing N N 404 VAL CG1 HG13 sing N N 405 VAL CG2 HG21 sing N N 406 VAL CG2 HG22 sing N N 407 VAL CG2 HG23 sing N N 408 VAL OXT HXT sing N N 409 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 504 n B 2 NAG 2 B NAG 2 A NAG 503 n B 2 NAG 3 B NAG 3 A NAG 502 n B 2 NAG 4 B NAG 4 A NAG 501 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,4,3/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1-1/a4-b1_b4-c1_c4-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 NAG C1 O1 2 NAG O4 HO4 sing ? 3 2 4 NAG C1 O1 3 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 NAG 3 n 2 NAG 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'NICKEL (II) ION' NI 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BKH _pdbx_initial_refinement_model.details 'Structure of the phiKZ gp144 (PDB code 3BKH)' #