data_3BN7 # _entry.id 3BN7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BN7 pdb_00003bn7 10.2210/pdb3bn7/pdb RCSB RCSB045724 ? ? WWPDB D_1000045724 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 378287 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3BN7 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of dimeric ferredoxin-like protein (NP_421070.1) from Caulobacter crescentus at 1.64 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3BN7 _cell.length_a 47.921 _cell.length_b 47.921 _cell.length_c 167.352 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BN7 _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ferredoxin-like protein' 14138.562 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)LFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVD NSYDVSEL(MSE)VFKSVEDQKRYRDHPLLQKFVADCSHLWSKVVVYDS(MSE)SV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMLFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSEL MVFKSVEDQKRYRDHPLLQKFVADCSHLWSKVVVYDSMSV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 378287 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 LEU n 1 22 PHE n 1 23 HIS n 1 24 GLN n 1 25 VAL n 1 26 PHE n 1 27 PHE n 1 28 TRP n 1 29 LEU n 1 30 LYS n 1 31 ASN n 1 32 PRO n 1 33 GLY n 1 34 ASP n 1 35 LYS n 1 36 ALA n 1 37 ASP n 1 38 ARG n 1 39 ASP n 1 40 LYS n 1 41 LEU n 1 42 ILE n 1 43 ALA n 1 44 GLY n 1 45 LEU n 1 46 LYS n 1 47 ALA n 1 48 LEU n 1 49 LYS n 1 50 ALA n 1 51 ILE n 1 52 ASP n 1 53 VAL n 1 54 ILE n 1 55 GLN n 1 56 GLN n 1 57 LEU n 1 58 HIS n 1 59 VAL n 1 60 GLY n 1 61 VAL n 1 62 PRO n 1 63 ALA n 1 64 ALA n 1 65 THR n 1 66 GLU n 1 67 LYS n 1 68 ARG n 1 69 ASP n 1 70 VAL n 1 71 VAL n 1 72 ASP n 1 73 ASN n 1 74 SER n 1 75 TYR n 1 76 ASP n 1 77 VAL n 1 78 SER n 1 79 GLU n 1 80 LEU n 1 81 MSE n 1 82 VAL n 1 83 PHE n 1 84 LYS n 1 85 SER n 1 86 VAL n 1 87 GLU n 1 88 ASP n 1 89 GLN n 1 90 LYS n 1 91 ARG n 1 92 TYR n 1 93 ARG n 1 94 ASP n 1 95 HIS n 1 96 PRO n 1 97 LEU n 1 98 LEU n 1 99 GLN n 1 100 LYS n 1 101 PHE n 1 102 VAL n 1 103 ALA n 1 104 ASP n 1 105 CYS n 1 106 SER n 1 107 HIS n 1 108 LEU n 1 109 TRP n 1 110 SER n 1 111 LYS n 1 112 VAL n 1 113 VAL n 1 114 VAL n 1 115 TYR n 1 116 ASP n 1 117 SER n 1 118 MSE n 1 119 SER n 1 120 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Caulobacter _entity_src_gen.pdbx_gene_src_gene 'NP_421070.1, CC_2267' _entity_src_gen.gene_src_species 'Caulobacter vibrioides' _entity_src_gen.gene_src_strain CB15 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter crescentus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 190650 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 19089 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9A628_CAUCR _struct_ref.pdbx_db_accession Q9A628 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYRDHPLLQ KFVADCSHLWSKVVVYDSMSV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BN7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 120 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9A628 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BN7 MSE A 1 ? UNP Q9A628 ? ? 'expression tag' -18 1 1 3BN7 GLY A 2 ? UNP Q9A628 ? ? 'expression tag' -17 2 1 3BN7 SER A 3 ? UNP Q9A628 ? ? 'expression tag' -16 3 1 3BN7 ASP A 4 ? UNP Q9A628 ? ? 'expression tag' -15 4 1 3BN7 LYS A 5 ? UNP Q9A628 ? ? 'expression tag' -14 5 1 3BN7 ILE A 6 ? UNP Q9A628 ? ? 'expression tag' -13 6 1 3BN7 HIS A 7 ? UNP Q9A628 ? ? 'expression tag' -12 7 1 3BN7 HIS A 8 ? UNP Q9A628 ? ? 'expression tag' -11 8 1 3BN7 HIS A 9 ? UNP Q9A628 ? ? 'expression tag' -10 9 1 3BN7 HIS A 10 ? UNP Q9A628 ? ? 'expression tag' -9 10 1 3BN7 HIS A 11 ? UNP Q9A628 ? ? 'expression tag' -8 11 1 3BN7 HIS A 12 ? UNP Q9A628 ? ? 'expression tag' -7 12 1 3BN7 GLU A 13 ? UNP Q9A628 ? ? 'expression tag' -6 13 1 3BN7 ASN A 14 ? UNP Q9A628 ? ? 'expression tag' -5 14 1 3BN7 LEU A 15 ? UNP Q9A628 ? ? 'expression tag' -4 15 1 3BN7 TYR A 16 ? UNP Q9A628 ? ? 'expression tag' -3 16 1 3BN7 PHE A 17 ? UNP Q9A628 ? ? 'expression tag' -2 17 1 3BN7 GLN A 18 ? UNP Q9A628 ? ? 'expression tag' -1 18 1 3BN7 GLY A 19 ? UNP Q9A628 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3BN7 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 40.0% PEG 400, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2007-11-20 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97954 1.0 3 0.97916 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97954, 0.97916' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3BN7 _reflns.d_resolution_high 1.64 _reflns.d_resolution_low 29.463 _reflns.number_obs 14906 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_netI_over_sigmaI 5.700 _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 25.76 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.64 1.68 ? 7377 ? 1.096 0.7 1.096 ? 7.00 ? 1054 100.00 1 1 1.68 1.73 ? 7323 ? 0.790 1.0 0.790 ? 7.00 ? 1050 100.00 2 1 1.73 1.78 ? 7150 ? 0.596 1.3 0.596 ? 7.10 ? 1014 100.00 3 1 1.78 1.83 ? 6756 ? 0.506 1.5 0.506 ? 7.00 ? 972 100.00 4 1 1.83 1.89 ? 6715 ? 0.372 2.0 0.372 ? 7.00 ? 962 100.00 5 1 1.89 1.96 ? 6369 ? 0.283 2.5 0.283 ? 7.00 ? 911 100.00 6 1 1.96 2.03 ? 6254 ? 0.198 3.8 0.198 ? 6.90 ? 906 100.00 7 1 2.03 2.12 ? 6029 ? 0.163 4.4 0.163 ? 7.00 ? 866 100.00 8 1 2.12 2.21 ? 5766 ? 0.124 5.6 0.124 ? 6.90 ? 837 100.00 9 1 2.21 2.32 ? 5520 ? 0.111 6.2 0.111 ? 6.90 ? 800 100.00 10 1 2.32 2.44 ? 5297 ? 0.090 7.6 0.090 ? 6.90 ? 772 100.00 11 1 2.44 2.59 ? 4978 ? 0.080 8.4 0.080 ? 6.80 ? 727 100.00 12 1 2.59 2.77 ? 4694 ? 0.074 8.6 0.074 ? 6.80 ? 694 100.00 13 1 2.77 2.99 ? 4446 ? 0.066 9.9 0.066 ? 6.80 ? 657 100.00 14 1 2.99 3.28 ? 4010 ? 0.057 10.5 0.057 ? 6.70 ? 595 100.00 15 1 3.28 3.67 ? 3684 ? 0.053 10.6 0.053 ? 6.60 ? 559 100.00 16 1 3.67 4.23 ? 3215 ? 0.052 10.1 0.052 ? 6.40 ? 502 100.00 17 1 4.23 5.19 ? 2715 ? 0.042 13.4 0.042 ? 6.20 ? 436 100.00 18 1 5.19 7.33 ? 2081 ? 0.043 13.4 0.043 ? 5.90 ? 355 100.00 19 1 7.33 29.463 ? 1135 ? 0.039 14.8 0.039 ? 4.80 ? 237 98.30 20 1 # _refine.entry_id 3BN7 _refine.ls_d_res_high 1.640 _refine.ls_d_res_low 29.463 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.990 _refine.ls_number_reflns_obs 14825 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. ACT MODELED BASED ON CRYSTALLIZATION CONDITIONS. ; _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.233 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 750 _refine.B_iso_mean 20.384 _refine.aniso_B[1][1] 0.830 _refine.aniso_B[2][2] 0.830 _refine.aniso_B[3][3] -1.240 _refine.aniso_B[1][2] 0.410 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.099 _refine.overall_SU_ML 0.067 _refine.overall_SU_B 3.885 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 810 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 886 _refine_hist.d_res_high 1.640 _refine_hist.d_res_low 29.463 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 874 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 580 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1192 1.713 1.948 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1428 0.985 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 115 5.399 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41 31.013 24.634 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 158 14.551 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 29.394 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 133 0.105 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 982 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 176 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 159 0.219 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 576 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 418 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 471 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 46 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 22 0.303 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.132 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 577 1.354 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 211 0.328 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 865 1.781 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 380 2.697 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 320 3.596 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.640 _refine_ls_shell.d_res_low 1.682 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 971 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.307 _refine_ls_shell.R_factor_R_free 0.334 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1047 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BN7 _struct.title 'CRYSTAL STRUCTURE OF A DIMERIC FERREDOXIN-LIKE PROTEIN (CC_2267) FROM CAULOBACTER CRESCENTUS CB15 AT 1.64 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;DIMERIC FERREDOXIN-LIKE PROTEIN, STRESS RESPONSIVE A/B BARREL DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3BN7 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 34 ? ALA A 47 ? ASP A 15 ALA A 28 1 ? 14 HELX_P HELX_P2 2 LEU A 48 ? ILE A 51 ? LEU A 29 ILE A 32 5 ? 4 HELX_P HELX_P3 3 SER A 85 ? ASP A 94 ? SER A 66 ASP A 75 1 ? 10 HELX_P HELX_P4 4 HIS A 95 ? SER A 106 ? HIS A 76 SER A 87 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A LEU 21 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A LEU 80 C ? ? ? 1_555 A MSE 81 N ? ? A LEU 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 81 C ? ? ? 1_555 A VAL 82 N ? ? A MSE 62 A VAL 63 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A SER 117 C ? ? ? 1_555 A MSE 118 N ? ? A SER 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A MSE 118 C ? ? ? 1_555 A SER 119 N ? ? A MSE 99 A SER 100 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 56 ? GLY A 60 ? GLN A 37 GLY A 41 A 2 VAL A 77 ? PHE A 83 ? VAL A 58 PHE A 64 A 3 LEU A 21 ? LEU A 29 ? LEU A 2 LEU A 10 A 4 TRP A 109 ? MSE A 118 ? TRP A 90 MSE A 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 58 ? N HIS A 39 O LEU A 80 ? O LEU A 61 A 2 3 O MSE A 81 ? O MSE A 62 N HIS A 23 ? N HIS A 4 A 3 4 N PHE A 22 ? N PHE A 3 O SER A 117 ? O SER A 98 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ACT _struct_site.pdbx_auth_seq_id 102 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE ACT A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 23 ? HIS A 4 . ? 1_555 ? 2 AC1 5 GLU A 79 ? GLU A 60 . ? 1_555 ? 3 AC1 5 TYR A 92 ? TYR A 73 . ? 1_555 ? 4 AC1 5 ARG A 93 ? ARG A 74 . ? 1_555 ? 5 AC1 5 PHE A 101 ? PHE A 82 . ? 1_555 ? # _atom_sites.entry_id 3BN7 _atom_sites.fract_transf_matrix[1][1] 0.020868 _atom_sites.fract_transf_matrix[1][2] 0.012048 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024096 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005975 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 ? ? ? A . n A 1 16 TYR 16 -3 ? ? ? A . n A 1 17 PHE 17 -2 ? ? ? A . n A 1 18 GLN 18 -1 ? ? ? A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 LEU 21 2 2 LEU LEU A . n A 1 22 PHE 22 3 3 PHE PHE A . n A 1 23 HIS 23 4 4 HIS HIS A . n A 1 24 GLN 24 5 5 GLN GLN A . n A 1 25 VAL 25 6 6 VAL VAL A . n A 1 26 PHE 26 7 7 PHE PHE A . n A 1 27 PHE 27 8 8 PHE PHE A . n A 1 28 TRP 28 9 9 TRP TRP A . n A 1 29 LEU 29 10 10 LEU LEU A . n A 1 30 LYS 30 11 11 LYS LYS A . n A 1 31 ASN 31 12 12 ASN ASN A . n A 1 32 PRO 32 13 13 PRO PRO A . n A 1 33 GLY 33 14 14 GLY GLY A . n A 1 34 ASP 34 15 15 ASP ASP A . n A 1 35 LYS 35 16 16 LYS LYS A . n A 1 36 ALA 36 17 17 ALA ALA A . n A 1 37 ASP 37 18 18 ASP ASP A . n A 1 38 ARG 38 19 19 ARG ARG A . n A 1 39 ASP 39 20 20 ASP ASP A . n A 1 40 LYS 40 21 21 LYS LYS A . n A 1 41 LEU 41 22 22 LEU LEU A . n A 1 42 ILE 42 23 23 ILE ILE A . n A 1 43 ALA 43 24 24 ALA ALA A . n A 1 44 GLY 44 25 25 GLY GLY A . n A 1 45 LEU 45 26 26 LEU LEU A . n A 1 46 LYS 46 27 27 LYS LYS A . n A 1 47 ALA 47 28 28 ALA ALA A . n A 1 48 LEU 48 29 29 LEU LEU A . n A 1 49 LYS 49 30 30 LYS LYS A . n A 1 50 ALA 50 31 31 ALA ALA A . n A 1 51 ILE 51 32 32 ILE ILE A . n A 1 52 ASP 52 33 33 ASP ASP A . n A 1 53 VAL 53 34 34 VAL VAL A . n A 1 54 ILE 54 35 35 ILE ILE A . n A 1 55 GLN 55 36 36 GLN GLN A . n A 1 56 GLN 56 37 37 GLN GLN A . n A 1 57 LEU 57 38 38 LEU LEU A . n A 1 58 HIS 58 39 39 HIS HIS A . n A 1 59 VAL 59 40 40 VAL VAL A . n A 1 60 GLY 60 41 41 GLY GLY A . n A 1 61 VAL 61 42 42 VAL VAL A . n A 1 62 PRO 62 43 43 PRO PRO A . n A 1 63 ALA 63 44 44 ALA ALA A . n A 1 64 ALA 64 45 45 ALA ALA A . n A 1 65 THR 65 46 46 THR THR A . n A 1 66 GLU 66 47 47 GLU GLU A . n A 1 67 LYS 67 48 48 LYS LYS A . n A 1 68 ARG 68 49 49 ARG ARG A . n A 1 69 ASP 69 50 50 ASP ASP A . n A 1 70 VAL 70 51 51 VAL VAL A . n A 1 71 VAL 71 52 52 VAL VAL A . n A 1 72 ASP 72 53 53 ASP ASP A . n A 1 73 ASN 73 54 54 ASN ASN A . n A 1 74 SER 74 55 55 SER SER A . n A 1 75 TYR 75 56 56 TYR TYR A . n A 1 76 ASP 76 57 57 ASP ASP A . n A 1 77 VAL 77 58 58 VAL VAL A . n A 1 78 SER 78 59 59 SER SER A . n A 1 79 GLU 79 60 60 GLU GLU A . n A 1 80 LEU 80 61 61 LEU LEU A . n A 1 81 MSE 81 62 62 MSE MSE A . n A 1 82 VAL 82 63 63 VAL VAL A . n A 1 83 PHE 83 64 64 PHE PHE A . n A 1 84 LYS 84 65 65 LYS LYS A . n A 1 85 SER 85 66 66 SER SER A . n A 1 86 VAL 86 67 67 VAL VAL A . n A 1 87 GLU 87 68 68 GLU GLU A . n A 1 88 ASP 88 69 69 ASP ASP A . n A 1 89 GLN 89 70 70 GLN GLN A . n A 1 90 LYS 90 71 71 LYS LYS A . n A 1 91 ARG 91 72 72 ARG ARG A . n A 1 92 TYR 92 73 73 TYR TYR A . n A 1 93 ARG 93 74 74 ARG ARG A . n A 1 94 ASP 94 75 75 ASP ASP A . n A 1 95 HIS 95 76 76 HIS HIS A . n A 1 96 PRO 96 77 77 PRO PRO A . n A 1 97 LEU 97 78 78 LEU LEU A . n A 1 98 LEU 98 79 79 LEU LEU A . n A 1 99 GLN 99 80 80 GLN GLN A . n A 1 100 LYS 100 81 81 LYS LYS A . n A 1 101 PHE 101 82 82 PHE PHE A . n A 1 102 VAL 102 83 83 VAL VAL A . n A 1 103 ALA 103 84 84 ALA ALA A . n A 1 104 ASP 104 85 85 ASP ASP A . n A 1 105 CYS 105 86 86 CYS CYS A . n A 1 106 SER 106 87 87 SER SER A . n A 1 107 HIS 107 88 88 HIS HIS A . n A 1 108 LEU 108 89 89 LEU LEU A . n A 1 109 TRP 109 90 90 TRP TRP A . n A 1 110 SER 110 91 91 SER SER A . n A 1 111 LYS 111 92 92 LYS LYS A . n A 1 112 VAL 112 93 93 VAL VAL A . n A 1 113 VAL 113 94 94 VAL VAL A . n A 1 114 VAL 114 95 95 VAL VAL A . n A 1 115 TYR 115 96 96 TYR TYR A . n A 1 116 ASP 116 97 97 ASP ASP A . n A 1 117 SER 117 98 98 SER SER A . n A 1 118 MSE 118 99 99 MSE MSE A . n A 1 119 SER 119 100 100 SER SER A . n A 1 120 VAL 120 101 101 VAL VAL A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 102 1 ACT ACT A . C 3 HOH 1 103 2 HOH HOH A . C 3 HOH 2 104 3 HOH HOH A . C 3 HOH 3 105 4 HOH HOH A . C 3 HOH 4 106 5 HOH HOH A . C 3 HOH 5 107 6 HOH HOH A . C 3 HOH 6 108 7 HOH HOH A . C 3 HOH 7 109 8 HOH HOH A . C 3 HOH 8 110 9 HOH HOH A . C 3 HOH 9 111 10 HOH HOH A . C 3 HOH 10 112 11 HOH HOH A . C 3 HOH 11 113 12 HOH HOH A . C 3 HOH 12 114 13 HOH HOH A . C 3 HOH 13 115 14 HOH HOH A . C 3 HOH 14 116 15 HOH HOH A . C 3 HOH 15 117 16 HOH HOH A . C 3 HOH 16 118 17 HOH HOH A . C 3 HOH 17 119 18 HOH HOH A . C 3 HOH 18 120 19 HOH HOH A . C 3 HOH 19 121 20 HOH HOH A . C 3 HOH 20 122 21 HOH HOH A . C 3 HOH 21 123 22 HOH HOH A . C 3 HOH 22 124 23 HOH HOH A . C 3 HOH 23 125 24 HOH HOH A . C 3 HOH 24 126 25 HOH HOH A . C 3 HOH 25 127 26 HOH HOH A . C 3 HOH 26 128 27 HOH HOH A . C 3 HOH 27 129 28 HOH HOH A . C 3 HOH 28 130 29 HOH HOH A . C 3 HOH 29 131 30 HOH HOH A . C 3 HOH 30 132 31 HOH HOH A . C 3 HOH 31 133 32 HOH HOH A . C 3 HOH 32 134 33 HOH HOH A . C 3 HOH 33 135 34 HOH HOH A . C 3 HOH 34 136 35 HOH HOH A . C 3 HOH 35 137 36 HOH HOH A . C 3 HOH 36 138 37 HOH HOH A . C 3 HOH 37 139 38 HOH HOH A . C 3 HOH 38 140 39 HOH HOH A . C 3 HOH 39 141 40 HOH HOH A . C 3 HOH 40 142 41 HOH HOH A . C 3 HOH 41 143 42 HOH HOH A . C 3 HOH 42 144 43 HOH HOH A . C 3 HOH 43 145 44 HOH HOH A . C 3 HOH 44 146 45 HOH HOH A . C 3 HOH 45 147 46 HOH HOH A . C 3 HOH 46 148 47 HOH HOH A . C 3 HOH 47 149 48 HOH HOH A . C 3 HOH 48 150 49 HOH HOH A . C 3 HOH 49 151 50 HOH HOH A . C 3 HOH 50 152 51 HOH HOH A . C 3 HOH 51 153 52 HOH HOH A . C 3 HOH 52 154 53 HOH HOH A . C 3 HOH 53 155 54 HOH HOH A . C 3 HOH 54 156 55 HOH HOH A . C 3 HOH 55 157 56 HOH HOH A . C 3 HOH 56 158 57 HOH HOH A . C 3 HOH 57 159 58 HOH HOH A . C 3 HOH 58 160 59 HOH HOH A . C 3 HOH 59 161 60 HOH HOH A . C 3 HOH 60 162 61 HOH HOH A . C 3 HOH 61 163 62 HOH HOH A . C 3 HOH 62 164 63 HOH HOH A . C 3 HOH 63 165 64 HOH HOH A . C 3 HOH 64 166 65 HOH HOH A . C 3 HOH 65 167 66 HOH HOH A . C 3 HOH 66 168 67 HOH HOH A . C 3 HOH 67 169 68 HOH HOH A . C 3 HOH 68 170 69 HOH HOH A . C 3 HOH 69 171 70 HOH HOH A . C 3 HOH 70 172 71 HOH HOH A . C 3 HOH 71 173 72 HOH HOH A . C 3 HOH 72 174 73 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 81 A MSE 62 ? MET SELENOMETHIONINE 3 A MSE 118 A MSE 99 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 3020 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 23.9605000000 -0.8660254038 -0.5000000000 0.0000000000 41.5008033748 0.0000000000 0.0000000000 -1.0000000000 27.8920000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.7088 _pdbx_refine_tls.origin_y 27.2259 _pdbx_refine_tls.origin_z 5.8090 _pdbx_refine_tls.T[1][1] -0.0477 _pdbx_refine_tls.T[2][2] -0.0156 _pdbx_refine_tls.T[3][3] -0.0246 _pdbx_refine_tls.T[1][2] 0.0251 _pdbx_refine_tls.T[1][3] -0.0128 _pdbx_refine_tls.T[2][3] -0.0074 _pdbx_refine_tls.L[1][1] 1.3327 _pdbx_refine_tls.L[2][2] 0.4365 _pdbx_refine_tls.L[3][3] 1.7906 _pdbx_refine_tls.L[1][2] 0.5885 _pdbx_refine_tls.L[1][3] 0.2213 _pdbx_refine_tls.L[2][3] 0.2513 _pdbx_refine_tls.S[1][1] -0.0648 _pdbx_refine_tls.S[2][2] 0.0539 _pdbx_refine_tls.S[3][3] 0.0109 _pdbx_refine_tls.S[1][2] 0.0039 _pdbx_refine_tls.S[1][3] 0.0467 _pdbx_refine_tls.S[2][3] 0.0203 _pdbx_refine_tls.S[2][1] -0.0402 _pdbx_refine_tls.S[3][1] -0.1742 _pdbx_refine_tls.S[3][2] 0.0083 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 19 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 120 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 101 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHARP . ? package 'de La Fortelle' sharp-develop@globalphasing.com phasing http://babinet.globalphasing.com/sharp/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 12 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 124 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 12 ? ? -116.01 76.44 2 1 ALA A 45 ? ? -77.55 37.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 21 ? CE ? A LYS 40 CE 2 1 Y 1 A LYS 21 ? NZ ? A LYS 40 NZ 3 1 Y 1 A GLU 47 ? CG ? A GLU 66 CG 4 1 Y 1 A GLU 47 ? CD ? A GLU 66 CD 5 1 Y 1 A GLU 47 ? OE1 ? A GLU 66 OE1 6 1 Y 1 A GLU 47 ? OE2 ? A GLU 66 OE2 7 1 Y 1 A LYS 71 ? CG ? A LYS 90 CG 8 1 Y 1 A LYS 71 ? CD ? A LYS 90 CD 9 1 Y 1 A LYS 71 ? CE ? A LYS 90 CE 10 1 Y 1 A LYS 71 ? NZ ? A LYS 90 NZ 11 1 Y 1 A LYS 81 ? CD ? A LYS 100 CD 12 1 Y 1 A LYS 81 ? CE ? A LYS 100 CE 13 1 Y 1 A LYS 81 ? NZ ? A LYS 100 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A LEU -4 ? A LEU 15 16 1 Y 1 A TYR -3 ? A TYR 16 17 1 Y 1 A PHE -2 ? A PHE 17 18 1 Y 1 A GLN -1 ? A GLN 18 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH #