HEADER TRANSPORT PROTEIN 13-DEC-07 3BN8 TITLE CRYSTAL STRUCTURE OF A PUTATIVE STEROL CARRIER PROTEIN TYPE 2 (AF1534) TITLE 2 FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.11 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE STEROL CARRIER PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304, VC-16, JCM 9628, NBRC 100126; SOURCE 5 ATCC: 49558; SOURCE 6 GENE: 2649030, AF_1534; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MH4A KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 3BN8 1 SEQADV REVDAT 7 20-OCT-21 3BN8 1 SEQADV REVDAT 6 24-JUL-19 3BN8 1 REMARK LINK REVDAT 5 25-OCT-17 3BN8 1 REMARK REVDAT 4 13-JUL-11 3BN8 1 VERSN REVDAT 3 23-MAR-11 3BN8 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BN8 1 VERSN REVDAT 1 25-DEC-07 3BN8 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE STEROL CARRIER PROTEIN 2 JRNL TITL 2 (2649030) FROM ARCHAEOGLOBUS FULGIDUS AT 2.11 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 757 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1036 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.35000 REMARK 3 B22 (A**2) : 2.99000 REMARK 3 B33 (A**2) : -1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1808 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1211 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2439 ; 1.584 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2956 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 4.408 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;29.376 ;24.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;13.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2046 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 374 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 332 ; 0.217 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1163 ; 0.185 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 879 ; 0.192 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 858 ; 0.092 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.196 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.196 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.209 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.261 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1178 ; 2.442 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 467 ; 0.726 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1794 ; 3.263 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 769 ; 5.406 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 645 ; 6.769 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 100 4 REMARK 3 1 B 2 B 100 4 REMARK 3 2 A 101 A 111 6 REMARK 3 2 B 101 B 111 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1277 ; 0.400 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 142 ; 1.640 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1277 ; 1.220 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 142 ; 2.960 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8445 46.5850 32.8750 REMARK 3 T TENSOR REMARK 3 T11: -0.1113 T22: 0.0331 REMARK 3 T33: -0.1353 T12: -0.0295 REMARK 3 T13: -0.0407 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.0237 L22: 0.6670 REMARK 3 L33: 3.8772 L12: 0.2494 REMARK 3 L13: -0.2224 L23: 0.6226 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.1034 S13: -0.0383 REMARK 3 S21: -0.0684 S22: -0.1578 S23: 0.0986 REMARK 3 S31: 0.1460 S32: -0.7663 S33: 0.0735 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9998 42.6232 48.3442 REMARK 3 T TENSOR REMARK 3 T11: -0.0672 T22: -0.0841 REMARK 3 T33: -0.0198 T12: 0.0376 REMARK 3 T13: -0.0607 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.1398 L22: 1.9083 REMARK 3 L33: 3.0457 L12: -0.1239 REMARK 3 L13: 0.4067 L23: -0.7233 REMARK 3 S TENSOR REMARK 3 S11: 0.1422 S12: -0.1652 S13: -0.1595 REMARK 3 S21: 0.1737 S22: -0.0549 S23: -0.3656 REMARK 3 S31: 0.3542 S32: 0.3974 S33: -0.0873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. ONE UNKNOWN LIGAND IS MODELED IN THE STRUCTURE NEAR RESIDUE REMARK 3 TYR 45. REMARK 3 5. UNKNOWN ELECTRON DENSITY AROUND RESIDUE 5 IS NOT MODELED. REMARK 4 REMARK 4 3BN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 0.97953, 0.97939 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% PEG 1000, 0.1M TRIS REMARK 280 -HCL PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.86000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.12500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.12500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.21000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.72000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.21000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.72000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 118 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 PHE A 114 REMARK 465 GLU A 115 REMARK 465 LEU A 116 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 112 REMARK 465 LYS B 113 REMARK 465 PHE B 114 REMARK 465 GLU B 115 REMARK 465 LEU B 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CE NZ REMARK 470 LYS A 10 CD CE NZ REMARK 470 LEU A 14 CD1 CD2 REMARK 470 SER A 17 OG REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 52 CD OE1 OE2 REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 LYS A 113 CE NZ REMARK 470 LYS B 10 CD CE NZ REMARK 470 LEU B 14 CD1 CD2 REMARK 470 SER B 17 O OG REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ALA B 26 CB REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 ASP B 70 CG OD1 OD2 REMARK 470 LYS B 77 CE NZ REMARK 470 LYS B 108 CD CE NZ REMARK 470 GLN B 111 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 59.13 38.55 REMARK 500 SER A 60 68.79 -158.74 REMARK 500 SER B 60 70.88 -152.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381893 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHH. POSITIONS 39 AND 40 WERE MUTATED FROM REMARK 999 GLU TO TYR BASED ON RESULTS FROM THE UCLA SURFACE REMARK 999 ENTROPY REDUCTION SERVER. DBREF 3BN8 A 1 116 UNP O28738 O28738_ARCFU 1 116 DBREF 3BN8 B 1 116 UNP O28738 O28738_ARCFU 1 116 SEQADV 3BN8 MSE A -11 UNP O28738 EXPRESSION TAG SEQADV 3BN8 GLY A -10 UNP O28738 EXPRESSION TAG SEQADV 3BN8 SER A -9 UNP O28738 EXPRESSION TAG SEQADV 3BN8 ASP A -8 UNP O28738 EXPRESSION TAG SEQADV 3BN8 LYS A -7 UNP O28738 EXPRESSION TAG SEQADV 3BN8 ILE A -6 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS A -5 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS A -4 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS A -3 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS A -2 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS A -1 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS A 0 UNP O28738 EXPRESSION TAG SEQADV 3BN8 TYR A 39 UNP O28738 GLU 39 ENGINEERED MUTATION SEQADV 3BN8 TYR A 40 UNP O28738 GLU 40 ENGINEERED MUTATION SEQADV 3BN8 MSE B -11 UNP O28738 EXPRESSION TAG SEQADV 3BN8 GLY B -10 UNP O28738 EXPRESSION TAG SEQADV 3BN8 SER B -9 UNP O28738 EXPRESSION TAG SEQADV 3BN8 ASP B -8 UNP O28738 EXPRESSION TAG SEQADV 3BN8 LYS B -7 UNP O28738 EXPRESSION TAG SEQADV 3BN8 ILE B -6 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS B -5 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS B -4 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS B -3 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS B -2 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS B -1 UNP O28738 EXPRESSION TAG SEQADV 3BN8 HIS B 0 UNP O28738 EXPRESSION TAG SEQADV 3BN8 TYR B 39 UNP O28738 GLU 39 ENGINEERED MUTATION SEQADV 3BN8 TYR B 40 UNP O28738 GLU 40 ENGINEERED MUTATION SEQRES 1 A 128 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 128 SER GLU ALA LYS GLU LEU ILE LYS LYS MSE CYS ASP LEU SEQRES 3 A 128 GLN ASN SER ASN GLU GLU ILE GLN LYS GLU MSE ALA GLY SEQRES 4 A 128 TRP SER GLY VAL VAL GLN TYR LYS LEU ASP GLY TYR TYR SEQRES 5 A 128 PHE TYR VAL GLU TYR LYS SER ASP GLY THR CYS GLU PHE SEQRES 6 A 128 LYS GLU GLY VAL HIS SER SER PRO THR PHE THR VAL VAL SEQRES 7 A 128 ALA PRO PRO ASP PHE TRP LEU ALA VAL LEU LYS GLY GLN SEQRES 8 A 128 GLU ASP PRO VAL SER GLY PHE MSE MSE GLY LYS TYR ARG SEQRES 9 A 128 ILE GLU GLY ASN ILE MSE GLU ALA GLN ARG LEU ALA GLY SEQRES 10 A 128 VAL ILE LYS LYS PHE GLN GLY LYS PHE GLU LEU SEQRES 1 B 128 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 128 SER GLU ALA LYS GLU LEU ILE LYS LYS MSE CYS ASP LEU SEQRES 3 B 128 GLN ASN SER ASN GLU GLU ILE GLN LYS GLU MSE ALA GLY SEQRES 4 B 128 TRP SER GLY VAL VAL GLN TYR LYS LEU ASP GLY TYR TYR SEQRES 5 B 128 PHE TYR VAL GLU TYR LYS SER ASP GLY THR CYS GLU PHE SEQRES 6 B 128 LYS GLU GLY VAL HIS SER SER PRO THR PHE THR VAL VAL SEQRES 7 B 128 ALA PRO PRO ASP PHE TRP LEU ALA VAL LEU LYS GLY GLN SEQRES 8 B 128 GLU ASP PRO VAL SER GLY PHE MSE MSE GLY LYS TYR ARG SEQRES 9 B 128 ILE GLU GLY ASN ILE MSE GLU ALA GLN ARG LEU ALA GLY SEQRES 10 B 128 VAL ILE LYS LYS PHE GLN GLY LYS PHE GLU LEU MODRES 3BN8 MSE A 1 MET SELENOMETHIONINE MODRES 3BN8 MSE A 11 MET SELENOMETHIONINE MODRES 3BN8 MSE A 25 MET SELENOMETHIONINE MODRES 3BN8 MSE A 87 MET SELENOMETHIONINE MODRES 3BN8 MSE A 88 MET SELENOMETHIONINE MODRES 3BN8 MSE A 98 MET SELENOMETHIONINE MODRES 3BN8 MSE B 11 MET SELENOMETHIONINE MODRES 3BN8 MSE B 25 MET SELENOMETHIONINE MODRES 3BN8 MSE B 87 MET SELENOMETHIONINE MODRES 3BN8 MSE B 88 MET SELENOMETHIONINE MODRES 3BN8 MSE B 98 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 25 8 HET MSE A 87 16 HET MSE A 88 8 HET MSE A 98 8 HET MSE B 11 8 HET MSE B 25 8 HET MSE B 87 16 HET MSE B 88 8 HET MSE B 98 8 HET UNL A 117 9 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 4 HOH *68(H2 O) HELIX 1 1 SER A 2 ASN A 18 1 17 HELIX 2 2 ASN A 18 ALA A 26 1 9 HELIX 3 3 PRO A 68 LYS A 77 1 10 HELIX 4 4 ASP A 81 MSE A 88 1 8 HELIX 5 5 ASN A 96 PHE A 110 1 15 HELIX 6 6 SER B 2 SER B 17 1 16 HELIX 7 7 ASN B 18 ALA B 26 1 9 HELIX 8 8 PRO B 68 LYS B 77 1 10 HELIX 9 9 ASP B 81 MSE B 88 1 8 HELIX 10 10 ASN B 96 LYS B 109 1 14 SHEET 1 A 5 CYS A 51 GLU A 55 0 SHEET 2 A 5 TYR A 39 TYR A 45 -1 N TYR A 42 O LYS A 54 SHEET 3 A 5 GLY A 30 LEU A 36 -1 N TYR A 34 O PHE A 41 SHEET 4 A 5 PHE A 63 VAL A 66 1 O VAL A 65 N GLN A 33 SHEET 5 A 5 ARG A 92 GLU A 94 -1 O ARG A 92 N VAL A 66 SHEET 1 B 5 CYS B 51 GLU B 55 0 SHEET 2 B 5 TYR B 39 TYR B 45 -1 N TYR B 42 O LYS B 54 SHEET 3 B 5 GLY B 30 LEU B 36 -1 N GLY B 30 O TYR B 45 SHEET 4 B 5 PHE B 63 VAL B 66 1 O VAL B 65 N GLN B 33 SHEET 5 B 5 ARG B 92 GLU B 94 -1 O ARG B 92 N VAL B 66 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C LYS A 10 N MSE A 11 1555 1555 1.32 LINK C MSE A 11 N CYS A 12 1555 1555 1.34 LINK C GLU A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N ALA A 26 1555 1555 1.35 LINK C PHE A 86 N AMSE A 87 1555 1555 1.32 LINK C PHE A 86 N BMSE A 87 1555 1555 1.33 LINK C AMSE A 87 N MSE A 88 1555 1555 1.32 LINK C BMSE A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N GLY A 89 1555 1555 1.33 LINK C ILE A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N GLU A 99 1555 1555 1.33 LINK C LYS B 10 N MSE B 11 1555 1555 1.33 LINK C MSE B 11 N CYS B 12 1555 1555 1.33 LINK C GLU B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N ALA B 26 1555 1555 1.32 LINK C PHE B 86 N AMSE B 87 1555 1555 1.33 LINK C PHE B 86 N BMSE B 87 1555 1555 1.33 LINK C AMSE B 87 N MSE B 88 1555 1555 1.33 LINK C BMSE B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N GLY B 89 1555 1555 1.32 LINK C ILE B 97 N MSE B 98 1555 1555 1.32 LINK C MSE B 98 N GLU B 99 1555 1555 1.31 CRYST1 56.250 105.210 85.720 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011666 0.00000