data_3BNN # _entry.id 3BNN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BNN pdb_00003bnn 10.2210/pdb3bnn/pdb NDB AR0086 ? ? RCSB RCSB045739 ? ? WWPDB D_1000045739 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3BNN _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BNL . unspecified PDB 3BNO . unspecified PDB 3BNP . unspecified PDB 3BNQ . unspecified PDB 3BNR . unspecified PDB 3BNS . unspecified PDB 3BNT . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Westhof, E.' 2 # _citation.id primary _citation.title 'The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 36 _citation.page_first 2654 _citation.page_last 2666 _citation.year 2008 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18346970 _citation.pdbx_database_id_DOI 10.1093/nar/gkn112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Westhof, E.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'A site of human ribosome' 6702.068 4 ? ? ? ? 2 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGUCACCCCGGACAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can GCGUCACCCCGGACAAGUCGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 U n 1 5 C n 1 6 A n 1 7 C n 1 8 C n 1 9 C n 1 10 C n 1 11 G n 1 12 G n 1 13 A n 1 14 C n 1 15 A n 1 16 A n 1 17 G n 1 18 U n 1 19 C n 1 20 G n 1 21 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 G 20 20 20 G G A . n A 1 21 C 21 21 21 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 G 3 3 3 G G B . n B 1 4 U 4 4 4 U U B . n B 1 5 C 5 5 5 C C B . n B 1 6 A 6 6 6 A A B . n B 1 7 C 7 7 7 C C B . n B 1 8 C 8 8 8 C C B . n B 1 9 C 9 9 9 C C B . n B 1 10 C 10 10 10 C C B . n B 1 11 G 11 11 11 G G B . n B 1 12 G 12 12 12 G G B . n B 1 13 A 13 13 13 A A B . n B 1 14 C 14 14 14 C C B . n B 1 15 A 15 15 15 A A B . n B 1 16 A 16 16 16 A A B . n B 1 17 G 17 17 17 G G B . n B 1 18 U 18 18 18 U U B . n B 1 19 C 19 19 19 C C B . n B 1 20 G 20 20 20 G G B . n B 1 21 C 21 21 21 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 G 3 3 3 G G C . n C 1 4 U 4 4 4 U U C . n C 1 5 C 5 5 5 C C C . n C 1 6 A 6 6 6 A A C . n C 1 7 C 7 7 7 C C C . n C 1 8 C 8 8 8 C C C . n C 1 9 C 9 9 9 C C C . n C 1 10 C 10 10 10 C C C . n C 1 11 G 11 11 11 G G C . n C 1 12 G 12 12 12 G G C . n C 1 13 A 13 13 13 A A C . n C 1 14 C 14 14 14 C C C . n C 1 15 A 15 15 15 A A C . n C 1 16 A 16 16 16 A A C . n C 1 17 G 17 17 17 G G C . n C 1 18 U 18 18 18 U U C . n C 1 19 C 19 19 19 C C C . n C 1 20 G 20 20 20 G G C . n C 1 21 C 21 21 21 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 C 2 2 2 C C D . n D 1 3 G 3 3 3 G G D . n D 1 4 U 4 4 4 U U D . n D 1 5 C 5 5 5 C C D . n D 1 6 A 6 6 6 A A D . n D 1 7 C 7 7 7 C C D . n D 1 8 C 8 8 8 C C D . n D 1 9 C 9 9 9 C C D . n D 1 10 C 10 10 10 C C D . n D 1 11 G 11 11 11 G G D . n D 1 12 G 12 12 12 G G D . n D 1 13 A 13 13 13 A A D . n D 1 14 C 14 14 14 C C D . n D 1 15 A 15 15 15 A A D . n D 1 16 A 16 16 16 A A D . n D 1 17 G 17 17 17 G G D . n D 1 18 U 18 18 18 U U D . n D 1 19 C 19 19 19 C C D . n D 1 20 G 20 20 20 G G D . n D 1 21 C 21 21 21 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 22 1 HOH HOH A . E 2 HOH 2 23 2 HOH HOH A . E 2 HOH 3 24 3 HOH HOH A . E 2 HOH 4 25 4 HOH HOH A . E 2 HOH 5 26 5 HOH HOH A . E 2 HOH 6 27 6 HOH HOH A . E 2 HOH 7 28 7 HOH HOH A . E 2 HOH 8 29 8 HOH HOH A . E 2 HOH 9 30 9 HOH HOH A . E 2 HOH 10 31 10 HOH HOH A . E 2 HOH 11 32 11 HOH HOH A . E 2 HOH 12 33 12 HOH HOH A . E 2 HOH 13 34 13 HOH HOH A . E 2 HOH 14 35 14 HOH HOH A . E 2 HOH 15 36 15 HOH HOH A . E 2 HOH 16 37 16 HOH HOH A . E 2 HOH 17 38 17 HOH HOH A . E 2 HOH 18 39 18 HOH HOH A . E 2 HOH 19 40 19 HOH HOH A . E 2 HOH 20 41 20 HOH HOH A . E 2 HOH 21 42 21 HOH HOH A . E 2 HOH 22 43 22 HOH HOH A . E 2 HOH 23 44 23 HOH HOH A . E 2 HOH 24 45 24 HOH HOH A . E 2 HOH 25 46 25 HOH HOH A . E 2 HOH 26 47 26 HOH HOH A . E 2 HOH 27 48 27 HOH HOH A . E 2 HOH 28 49 28 HOH HOH A . E 2 HOH 29 50 29 HOH HOH A . E 2 HOH 30 51 30 HOH HOH A . E 2 HOH 31 52 31 HOH HOH A . F 2 HOH 1 22 1 HOH HOH B . F 2 HOH 2 23 2 HOH HOH B . F 2 HOH 3 24 3 HOH HOH B . F 2 HOH 4 25 4 HOH HOH B . F 2 HOH 5 26 5 HOH HOH B . F 2 HOH 6 27 6 HOH HOH B . F 2 HOH 7 28 7 HOH HOH B . F 2 HOH 8 29 8 HOH HOH B . F 2 HOH 9 30 9 HOH HOH B . F 2 HOH 10 31 10 HOH HOH B . F 2 HOH 11 32 11 HOH HOH B . F 2 HOH 12 33 12 HOH HOH B . F 2 HOH 13 34 13 HOH HOH B . F 2 HOH 14 35 14 HOH HOH B . F 2 HOH 15 36 15 HOH HOH B . F 2 HOH 16 37 16 HOH HOH B . F 2 HOH 17 38 17 HOH HOH B . F 2 HOH 18 39 18 HOH HOH B . F 2 HOH 19 40 19 HOH HOH B . F 2 HOH 20 41 20 HOH HOH B . F 2 HOH 21 42 21 HOH HOH B . F 2 HOH 22 43 22 HOH HOH B . F 2 HOH 23 44 23 HOH HOH B . G 2 HOH 1 22 1 HOH HOH C . G 2 HOH 2 23 2 HOH HOH C . G 2 HOH 3 24 3 HOH HOH C . G 2 HOH 4 25 4 HOH HOH C . G 2 HOH 5 26 5 HOH HOH C . G 2 HOH 6 27 6 HOH HOH C . G 2 HOH 7 28 7 HOH HOH C . G 2 HOH 8 29 8 HOH HOH C . G 2 HOH 9 30 9 HOH HOH C . G 2 HOH 10 31 10 HOH HOH C . G 2 HOH 11 32 11 HOH HOH C . G 2 HOH 12 33 12 HOH HOH C . G 2 HOH 13 34 13 HOH HOH C . G 2 HOH 14 35 14 HOH HOH C . G 2 HOH 15 36 15 HOH HOH C . G 2 HOH 16 37 16 HOH HOH C . G 2 HOH 17 38 17 HOH HOH C . G 2 HOH 18 39 18 HOH HOH C . G 2 HOH 19 40 19 HOH HOH C . G 2 HOH 20 41 20 HOH HOH C . G 2 HOH 21 42 21 HOH HOH C . G 2 HOH 22 43 22 HOH HOH C . G 2 HOH 23 44 23 HOH HOH C . G 2 HOH 24 45 24 HOH HOH C . G 2 HOH 25 46 25 HOH HOH C . G 2 HOH 26 47 26 HOH HOH C . G 2 HOH 27 48 27 HOH HOH C . G 2 HOH 28 49 28 HOH HOH C . G 2 HOH 29 50 29 HOH HOH C . G 2 HOH 30 51 30 HOH HOH C . G 2 HOH 31 52 31 HOH HOH C . H 2 HOH 1 22 1 HOH HOH D . H 2 HOH 2 23 2 HOH HOH D . H 2 HOH 3 24 3 HOH HOH D . H 2 HOH 4 25 4 HOH HOH D . H 2 HOH 5 26 5 HOH HOH D . H 2 HOH 6 27 6 HOH HOH D . H 2 HOH 7 28 7 HOH HOH D . H 2 HOH 8 29 8 HOH HOH D . H 2 HOH 9 30 9 HOH HOH D . H 2 HOH 10 31 10 HOH HOH D . H 2 HOH 11 32 11 HOH HOH D . H 2 HOH 12 33 12 HOH HOH D . H 2 HOH 13 34 13 HOH HOH D . H 2 HOH 14 35 14 HOH HOH D . H 2 HOH 15 36 15 HOH HOH D . H 2 HOH 16 37 16 HOH HOH D . H 2 HOH 17 38 17 HOH HOH D . H 2 HOH 18 39 18 HOH HOH D . H 2 HOH 19 40 19 HOH HOH D . H 2 HOH 20 41 20 HOH HOH D . H 2 HOH 21 42 21 HOH HOH D . H 2 HOH 22 43 22 HOH HOH D . H 2 HOH 23 44 23 HOH HOH D . H 2 HOH 24 45 24 HOH HOH D . H 2 HOH 25 46 25 HOH HOH D . H 2 HOH 26 47 26 HOH HOH D . H 2 HOH 27 48 27 HOH HOH D . H 2 HOH 28 49 28 HOH HOH D . H 2 HOH 29 50 29 HOH HOH D . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.2SSI 'Nov 2 2004' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 AMoRE . ? program 'Jorge Navaza' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _cell.length_a 34.610 _cell.length_b 44.500 _cell.length_c 52.360 _cell.angle_alpha 68.770 _cell.angle_beta 71.300 _cell.angle_gamma 67.720 _cell.entry_id 3BNN _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 3BNN _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 1 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3BNN _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;Sodium cacodylate, KCl, spermine tetrachloride, paromomycin, 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 KCl ? ? ? 1 3 1 'Sodium cacodylate' ? ? ? 1 4 2 MPD ? ? ? 1 5 2 KCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-06-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength_list 0.9999 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA # _reflns.entry_id 3BNN _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 39.590 _reflns.number_obs 17270 _reflns.pdbx_scaling_rejects 349 _reflns.pdbx_Rmerge_I_obs 0.031 _reflns.pdbx_netI_over_sigmaI 14.600 _reflns.pdbx_chi_squared 0.960 _reflns.pdbx_redundancy 2.670 _reflns.percent_possible_obs 97.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.00 2.07 ? 4292 ? 0.369 2.5 ? 1.000 2.61 ? 1645 92.60 ? 1 2.07 2.15 ? 4672 ? 0.293 2.9 ? 0.910 2.70 ? 1727 96.90 ? 2 2.15 2.25 ? 4689 ? 0.266 3.3 ? 0.960 2.71 ? 1728 97.10 ? 3 2.25 2.37 ? 4691 ? 0.228 3.6 ? 0.950 2.69 ? 1737 97.30 ? 4 2.37 2.52 ? 4667 ? 0.179 4.4 ? 0.920 2.66 ? 1748 97.50 ? 5 2.52 2.71 ? 4595 ? 0.118 6.3 ? 0.980 2.66 ? 1721 97.90 ? 6 2.71 2.99 ? 4726 ? 0.057 11.6 ? 0.910 2.65 ? 1756 97.80 ? 7 2.99 3.42 ? 4776 ? 0.025 26.5 ? 0.900 2.67 ? 1751 98.00 ? 8 3.42 4.31 ? 4711 ? 0.021 37.8 ? 0.990 2.66 ? 1750 98.50 ? 9 4.31 39.59 ? 4634 ? 0.019 46.7 ? 1.040 2.68 ? 1707 96.20 ? 10 # _refine.entry_id 3BNN _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 39.590 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.000 _refine.ls_number_reflns_obs 17269 _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.264 _refine.ls_percent_reflns_R_free 9.700 _refine.ls_number_reflns_R_free 1721 _refine.B_iso_mean 51.112 _refine.solvent_model_param_bsol 54.922 _refine.aniso_B[1][1] -0.245 _refine.aniso_B[2][2] 4.319 _refine.aniso_B[3][3] -4.075 _refine.aniso_B[1][2] 8.325 _refine.aniso_B[1][3] -1.221 _refine.aniso_B[2][3] 0.019 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.overall_FOM_work_R_set 0.689 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1788 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 1902 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 39.590 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.005 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 0.910 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 2.615 1.5 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 3.261 2.0 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 rna_free.param rna_free.top 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' # _struct.entry_id 3BNN _struct.title 'Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BNN _struct_keywords.text 'ribosome, decoding site, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3BNN _struct_ref.pdbx_db_accession 3BNN _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BNN A 1 ? 21 ? 3BNN 1 ? 21 ? 1 21 2 1 3BNN B 1 ? 21 ? 3BNN 1 ? 21 ? 1 21 3 1 3BNN C 1 ? 21 ? 3BNN 1 ? 21 ? 1 21 4 1 3BNN D 1 ? 21 ? 3BNN 1 ? 21 ? 1 21 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 1 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 1 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 1 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 20 N1 ? ? A C 2 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 20 O6 ? ? A C 2 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 20 N2 ? ? A C 2 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 B U 18 O4 ? ? A U 4 B U 18 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 17 N1 ? ? A C 5 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 17 O6 ? ? A C 5 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 17 N2 ? ? A C 5 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N4 ? ? ? 1_555 B A 13 N1 ? ? A C 8 B A 13 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 11 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 11 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 11 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 12 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 12 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 12 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 17 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 17 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 17 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 18 N3 ? ? ? 1_555 B U 4 O4 ? ? A U 18 B U 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog31 hydrog ? ? A U 18 O2 ? ? ? 1_555 B U 4 N3 ? ? A U 18 B U 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog32 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 20 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 20 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 20 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 20 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 20 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 20 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 21 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 21 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 21 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 1 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 1 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 1 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 20 N1 ? ? C C 2 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 20 O6 ? ? C C 2 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 20 N2 ? ? C C 2 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 19 N3 ? ? C G 3 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 19 O2 ? ? C G 3 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 19 N4 ? ? C G 3 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C U 4 N3 ? ? ? 1_555 D U 18 O4 ? ? C U 4 D U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog51 hydrog ? ? C U 4 O2 ? ? ? 1_555 D U 18 N3 ? ? C U 4 D U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog52 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 17 N1 ? ? C C 5 D G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 17 O6 ? ? C C 5 D G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 17 N2 ? ? C C 5 D G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 7 N4 ? ? ? 1_555 D C 14 O2 ? ? C C 7 D C 14 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog56 hydrog ? ? C C 8 N4 ? ? ? 1_555 D A 13 N1 ? ? C C 8 D A 13 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog57 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 12 N1 ? ? C C 9 D G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 12 O6 ? ? C C 9 D G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 12 N2 ? ? C C 9 D G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 11 N1 ? ? C C 10 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 11 O6 ? ? C C 10 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 11 N2 ? ? C C 10 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 11 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 11 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 11 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 11 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 11 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 11 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 12 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 12 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C G 12 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 12 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 12 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 12 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C A 13 N1 ? ? ? 1_555 D C 8 N4 ? ? C A 13 D C 8 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog70 hydrog ? ? C G 17 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 17 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 17 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 17 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 17 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 17 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C U 18 N3 ? ? ? 1_555 D U 4 O4 ? ? C U 18 D U 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog74 hydrog ? ? C U 18 O2 ? ? ? 1_555 D U 4 N3 ? ? C U 18 D U 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog75 hydrog ? ? C C 19 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 19 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C C 19 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 19 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C C 19 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 19 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C G 20 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 20 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 20 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 20 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C G 20 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 20 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 21 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 21 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 21 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 1 ? ? OP3 A G 1 ? ? 1.525 1.607 -0.082 0.012 N 2 1 P B G 1 ? ? OP3 B G 1 ? ? 1.519 1.607 -0.088 0.012 N 3 1 P C G 1 ? ? OP3 C G 1 ? ? 1.526 1.607 -0.081 0.012 N 4 1 P D G 1 ? ? OP3 D G 1 ? ? 1.524 1.607 -0.083 0.012 N # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BNN 'a-form double helix' 3BNN 'mismatched base pair' 3BNN 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 21 1_555 -0.342 -0.264 -0.125 -0.771 -4.360 -1.876 1 A_G1:C21_B A 1 ? B 21 ? 19 1 1 A C 2 1_555 B G 20 1_555 -0.010 -0.247 0.001 -0.276 -10.290 -1.533 2 A_C2:G20_B A 2 ? B 20 ? 19 1 1 A G 3 1_555 B C 19 1_555 -0.237 -0.067 -0.070 -2.880 -17.886 3.973 3 A_G3:C19_B A 3 ? B 19 ? 19 1 1 A U 4 1_555 B U 18 1_555 0.692 -1.402 -0.019 1.482 -18.327 -12.608 4 A_U4:U18_B A 4 ? B 18 ? ? ? 1 A C 5 1_555 B G 17 1_555 0.524 -0.130 -0.161 9.308 -20.008 7.540 5 A_C5:G17_B A 5 ? B 17 ? 19 1 1 A C 8 1_555 B A 13 1_555 -1.899 0.501 -0.241 27.740 -13.606 -3.902 6 A_C8:A13_B A 8 ? B 13 ? ? ? 1 A C 9 1_555 B G 12 1_555 0.078 -0.097 -0.095 13.592 -16.546 0.870 7 A_C9:G12_B A 9 ? B 12 ? 19 1 1 A C 10 1_555 B G 11 1_555 0.349 -0.300 0.426 -2.627 -3.746 -0.765 8 A_C10:G11_B A 10 ? B 11 ? 19 1 1 A G 11 1_555 B C 10 1_555 -0.138 -0.195 -0.477 -7.830 -8.380 3.413 9 A_G11:C10_B A 11 ? B 10 ? 19 1 1 A G 12 1_555 B C 9 1_555 -0.174 -0.375 -0.343 -18.576 -13.748 0.929 10 A_G12:C9_B A 12 ? B 9 ? 19 1 1 A G 17 1_555 B C 5 1_555 -0.335 -0.154 0.265 9.554 -12.756 1.692 11 A_G17:C5_B A 17 ? B 5 ? 19 1 1 A U 18 1_555 B U 4 1_555 2.015 -1.845 0.184 2.322 -19.724 5.244 12 A_U18:U4_B A 18 ? B 4 ? 16 1 1 A C 19 1_555 B G 3 1_555 0.144 -0.317 -0.012 4.320 -20.473 2.337 13 A_C19:G3_B A 19 ? B 3 ? 19 1 1 A G 20 1_555 B C 2 1_555 -0.127 -0.179 0.043 -2.640 -9.411 3.608 14 A_G20:C2_B A 20 ? B 2 ? 19 1 1 A C 21 1_555 B G 1 1_555 0.347 -0.052 0.160 2.853 -6.330 2.308 15 A_C21:G1_B A 21 ? B 1 ? 19 1 1 C G 1 1_555 D C 21 1_555 -0.101 -0.110 0.163 -0.964 -6.899 -0.371 16 C_G1:C21_D C 1 ? D 21 ? 19 1 1 C C 2 1_555 D G 20 1_555 0.445 0.023 -0.150 11.607 -10.906 3.161 17 C_C2:G20_D C 2 ? D 20 ? 19 1 1 C G 3 1_555 D C 19 1_555 -0.312 -0.257 0.230 0.937 -14.424 3.083 18 C_G3:C19_D C 3 ? D 19 ? 19 1 1 C U 4 1_555 D U 18 1_555 2.297 -1.562 0.150 -5.149 -18.347 9.197 19 C_U4:U18_D C 4 ? D 18 ? 16 1 1 C C 5 1_555 D G 17 1_555 0.560 -0.258 -0.088 0.961 -14.633 5.676 20 C_C5:G17_D C 5 ? D 17 ? 19 1 1 C C 7 1_555 D C 14 1_555 -6.419 -2.382 -0.184 10.976 -3.642 -13.594 21 C_C7:C14_D C 7 ? D 14 ? ? ? 1 C C 8 1_555 D A 13 1_555 -2.145 0.523 -0.755 17.774 -9.804 5.657 22 C_C8:A13_D C 8 ? D 13 ? ? ? 1 C C 9 1_555 D G 12 1_555 0.149 -0.208 -0.184 10.024 -9.902 0.891 23 C_C9:G12_D C 9 ? D 12 ? 19 1 1 C C 10 1_555 D G 11 1_555 -0.026 -0.204 -0.357 9.493 -8.640 3.643 24 C_C10:G11_D C 10 ? D 11 ? 19 1 1 C G 11 1_555 D C 10 1_555 -0.034 -0.156 -0.330 -5.718 -6.636 1.162 25 C_G11:C10_D C 11 ? D 10 ? 19 1 1 C G 12 1_555 D C 9 1_555 -0.111 -0.088 -0.484 -14.064 -12.502 2.339 26 C_G12:C9_D C 12 ? D 9 ? 19 1 1 C A 13 1_555 D C 8 1_555 2.670 0.567 -1.486 -32.686 -15.114 -4.518 27 C_A13:C8_D C 13 ? D 8 ? ? ? 1 C G 17 1_555 D C 5 1_555 -0.426 -0.163 0.238 6.006 -11.181 1.180 28 C_G17:C5_D C 17 ? D 5 ? 19 1 1 C U 18 1_555 D U 4 1_555 2.218 -1.880 0.287 0.580 -18.349 5.499 29 C_U18:U4_D C 18 ? D 4 ? 16 1 1 C C 19 1_555 D G 3 1_555 0.182 -0.085 -0.107 9.152 -19.794 5.657 30 C_C19:G3_D C 19 ? D 3 ? 19 1 1 C G 20 1_555 D C 2 1_555 -0.087 -0.193 -0.043 -5.078 -12.602 0.523 31 C_G20:C2_D C 20 ? D 2 ? 19 1 1 C C 21 1_555 D G 1 1_555 0.231 -0.068 0.152 -0.175 -6.805 2.048 32 C_C21:G1_D C 21 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 21 1_555 A C 2 1_555 B G 20 1_555 -0.059 -1.729 3.252 -0.955 4.020 33.165 -3.648 -0.049 3.028 7.008 1.665 33.414 1 AA_G1C2:G20C21_BB A 1 ? B 21 ? A 2 ? B 20 ? 1 A C 2 1_555 B G 20 1_555 A G 3 1_555 B C 19 1_555 0.199 -1.880 3.254 0.002 10.348 25.287 -6.270 -0.421 2.318 22.474 -0.005 27.290 2 AA_C2G3:C19G20_BB A 2 ? B 20 ? A 3 ? B 19 ? 1 A G 3 1_555 B C 19 1_555 A U 4 1_555 B U 18 1_555 -0.923 -1.337 3.091 -3.086 1.373 41.711 -2.008 0.986 3.105 1.925 4.326 41.842 3 AA_G3U4:U18C19_BB A 3 ? B 19 ? A 4 ? B 18 ? 1 A U 4 1_555 B U 18 1_555 A C 5 1_555 B G 17 1_555 1.272 -1.396 2.997 8.460 5.015 35.547 -2.845 -0.942 2.994 8.026 -13.540 36.840 4 AA_U4C5:G17U18_BB A 4 ? B 18 ? A 5 ? B 17 ? 1 A C 8 1_555 B A 13 1_555 A C 9 1_555 B G 12 1_555 0.231 -1.264 3.528 -3.182 12.161 41.066 -2.972 -0.641 3.027 16.866 4.413 42.867 5 AA_C8C9:G12A13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A C 9 1_555 B G 12 1_555 A C 10 1_555 B G 11 1_555 -0.097 -2.024 3.519 -6.105 7.149 35.631 -4.196 -0.694 3.045 11.439 9.768 36.812 6 AA_C9C10:G11G12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 A C 10 1_555 B G 11 1_555 A G 11 1_555 B C 10 1_555 0.047 -2.332 3.409 6.941 5.056 25.241 -6.354 1.674 2.810 11.165 -15.328 26.639 7 AA_C10G11:C10G11_BB A 10 ? B 11 ? A 11 ? B 10 ? 1 A G 11 1_555 B C 10 1_555 A G 12 1_555 B C 9 1_555 0.194 -1.903 3.549 -1.291 10.424 34.063 -4.633 -0.505 2.852 17.292 2.142 35.600 8 AA_G11G12:C9C10_BB A 11 ? B 10 ? A 12 ? B 9 ? 1 A G 17 1_555 B C 5 1_555 A U 18 1_555 B U 4 1_555 -0.112 -0.950 3.431 -0.705 6.842 48.212 -1.693 0.080 3.277 8.326 0.858 48.671 9 AA_G17U18:U4C5_BB A 17 ? B 5 ? A 18 ? B 4 ? 1 A U 18 1_555 B U 4 1_555 A C 19 1_555 B G 3 1_555 -0.015 -1.719 2.911 5.253 7.829 26.528 -5.038 1.037 2.276 16.415 -11.014 28.125 10 AA_U18C19:G3U4_BB A 18 ? B 4 ? A 19 ? B 3 ? 1 A C 19 1_555 B G 3 1_555 A G 20 1_555 B C 2 1_555 -0.545 -1.846 3.289 -1.447 13.598 27.826 -5.788 0.774 2.194 26.355 2.804 30.945 11 AA_C19G20:C2G3_BB A 19 ? B 3 ? A 20 ? B 2 ? 1 A G 20 1_555 B C 2 1_555 A C 21 1_555 B G 1 1_555 0.096 -1.517 3.191 -0.725 3.013 33.677 -3.072 -0.277 3.045 5.186 1.249 33.815 12 AA_G20C21:G1C2_BB A 20 ? B 2 ? A 21 ? B 1 ? 1 C G 1 1_555 D C 21 1_555 C C 2 1_555 D G 20 1_555 0.140 -0.996 3.043 2.295 3.359 32.771 -2.274 0.110 2.932 5.924 -4.048 33.016 13 CC_G1C2:G20C21_DD C 1 ? D 21 ? C 2 ? D 20 ? 1 C C 2 1_555 D G 20 1_555 C G 3 1_555 D C 19 1_555 0.085 -1.768 3.287 -3.416 13.869 26.803 -5.840 -0.768 2.110 27.571 6.791 30.310 14 CC_C2G3:C19G20_DD C 2 ? D 20 ? C 3 ? D 19 ? 1 C G 3 1_555 D C 19 1_555 C U 4 1_555 D U 18 1_555 0.046 -0.809 3.432 1.276 4.474 46.234 -1.417 0.054 3.344 5.681 -1.621 46.455 15 CC_G3U4:U18C19_DD C 3 ? D 19 ? C 4 ? D 18 ? 1 C U 4 1_555 D U 18 1_555 C C 5 1_555 D G 17 1_555 0.144 -1.471 2.922 5.293 3.861 30.824 -3.336 0.595 2.709 7.162 -9.819 31.496 16 CC_U4C5:G17U18_DD C 4 ? D 18 ? C 5 ? D 17 ? 1 C C 7 1_555 D C 14 1_555 C C 8 1_555 D A 13 1_555 0.318 -0.953 3.400 -6.347 15.463 49.317 -2.124 -0.789 2.939 17.945 7.366 51.904 17 CC_C7C8:A13C14_DD C 7 ? D 14 ? C 8 ? D 13 ? 1 C C 8 1_555 D A 13 1_555 C C 9 1_555 D G 12 1_555 -0.426 -1.402 3.596 -8.117 10.453 38.757 -3.227 -0.336 3.154 15.220 11.819 40.872 18 CC_C8C9:G12A13_DD C 8 ? D 13 ? C 9 ? D 12 ? 1 C C 9 1_555 D G 12 1_555 C C 10 1_555 D G 11 1_555 -0.210 -1.891 3.286 0.073 5.499 30.892 -4.487 0.402 2.914 10.222 -0.136 31.366 19 CC_C9C10:G11G12_DD C 9 ? D 12 ? C 10 ? D 11 ? 1 C C 10 1_555 D G 11 1_555 C G 11 1_555 D C 10 1_555 0.123 -1.874 3.746 -1.568 9.787 30.254 -5.314 -0.528 2.999 18.149 2.907 31.800 20 CC_C10G11:C10G11_DD C 10 ? D 11 ? C 11 ? D 10 ? 1 C G 11 1_555 D C 10 1_555 C G 12 1_555 D C 9 1_555 0.331 -2.087 3.552 3.076 8.696 30.336 -5.435 -0.037 2.878 16.153 -5.715 31.675 21 CC_G11G12:C9C10_DD C 11 ? D 10 ? C 12 ? D 9 ? 1 C G 12 1_555 D C 9 1_555 C A 13 1_555 D C 8 1_555 -0.101 -1.755 4.005 9.948 12.019 42.644 -3.517 1.155 3.317 15.904 -13.163 45.283 22 CC_G12A13:C8C9_DD C 12 ? D 9 ? C 13 ? D 8 ? 1 C G 17 1_555 D C 5 1_555 C U 18 1_555 D U 4 1_555 -0.086 -1.084 3.385 -0.158 5.722 48.555 -1.753 0.092 3.246 6.931 0.191 48.871 23 CC_G17U18:U4C5_DD C 17 ? D 5 ? C 18 ? D 4 ? 1 C U 18 1_555 D U 4 1_555 C C 19 1_555 D G 3 1_555 0.082 -1.825 2.797 7.475 6.666 23.934 -5.521 1.446 2.147 15.248 -17.099 25.917 24 CC_U18C19:G3U4_DD C 18 ? D 4 ? C 19 ? D 3 ? 1 C C 19 1_555 D G 3 1_555 C G 20 1_555 D C 2 1_555 -0.464 -1.800 3.417 -0.607 15.487 29.878 -5.450 0.712 2.247 27.807 1.090 33.577 25 CC_C19G20:C2G3_DD C 19 ? D 3 ? C 20 ? D 2 ? 1 C G 20 1_555 D C 2 1_555 C C 21 1_555 D G 1 1_555 0.204 -1.690 3.233 -1.356 0.501 31.189 -3.233 -0.633 3.195 0.932 2.520 31.222 26 CC_G20C21:G1C2_DD C 20 ? D 2 ? C 21 ? D 1 ? # _atom_sites.entry_id 3BNN _atom_sites.fract_transf_matrix[1][1] 0.028893 _atom_sites.fract_transf_matrix[1][2] -0.011838 _atom_sites.fract_transf_matrix[1][3] -0.006792 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024285 _atom_sites.fract_transf_matrix[2][3] -0.006931 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020968 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_