data_3BNR # _entry.id 3BNR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BNR pdb_00003bnr 10.2210/pdb3bnr/pdb NDB AR0090 ? ? RCSB RCSB045743 ? ? WWPDB D_1000045743 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.value' 19 3 'Structure model' '_struct_conn.conn_type_id' 20 3 'Structure model' '_struct_conn.id' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 3 'Structure model' '_struct_conn_type.id' 38 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3BNR _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BNL . unspecified PDB 3BNN . unspecified PDB 3BNO . unspecified PDB 3BNP . unspecified PDB 3BNQ . unspecified PDB 3BNS . unspecified PDB 3BNT . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Westhof, E.' 2 # _citation.id primary _citation.title 'The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 36 _citation.page_first 2654 _citation.page_last 2666 _citation.year 2008 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18346970 _citation.pdbx_database_id_DOI 10.1093/nar/gkn112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Westhof, E.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'A site of human mitochondrial ribosome, chain one' 7394.280 2 ? A1555G ? ? 2 polymer syn 'A site of human mitochondrial ribosome, chain two' 7088.115 1 ? A1555G ? ? 3 polymer syn 'A site of human mitochondrial ribosome, chain three' 6781.949 1 ? A1555G ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 non-polymer syn PAROMOMYCIN 615.628 1 ? ? ? ? 6 water nat water 18.015 183 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'UUGCGUCACC(5BU)CGAGCAAGUCGC' UUGCGUCACCUCGAGCAAGUCGC A,C ? 2 polyribonucleotide no yes 'UGCGUCACC(5BU)CGAGCAAGUCGC' UGCGUCACCUCGAGCAAGUCGC B ? 3 polyribonucleotide no yes 'GCGUCACC(5BU)CGAGCAAGUCGC' GCGUCACCUCGAGCAAGUCGC D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'POTASSIUM ION' K 5 PAROMOMYCIN PAR 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 C n 1 11 5BU n 1 12 C n 1 13 G n 1 14 A n 1 15 G n 1 16 C n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n 2 1 U n 2 2 G n 2 3 C n 2 4 G n 2 5 U n 2 6 C n 2 7 A n 2 8 C n 2 9 C n 2 10 5BU n 2 11 C n 2 12 G n 2 13 A n 2 14 G n 2 15 C n 2 16 A n 2 17 A n 2 18 G n 2 19 U n 2 20 C n 2 21 G n 2 22 C n 3 1 G n 3 2 C n 3 3 G n 3 4 U n 3 5 C n 3 6 A n 3 7 C n 3 8 C n 3 9 5BU n 3 10 C n 3 11 G n 3 12 A n 3 13 G n 3 14 C n 3 15 A n 3 16 A n 3 17 G n 3 18 U n 3 19 C n 3 20 G n 3 21 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 PAR non-polymer . PAROMOMYCIN 'PAROMOMYCIN I; AMMINOSIDIN; CATENULIN; CRESTOMYCIN; MONOMYCIN A; NEOMYCIN E' 'C23 H45 N5 O14' 615.628 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 5BU 11 11 11 5BU 5BU A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 2 1 U 1 1 1 U U B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 U 5 5 5 U U B . n B 2 6 C 6 6 6 C C B . n B 2 7 A 7 7 7 A A B . n B 2 8 C 8 8 8 C C B . n B 2 9 C 9 9 9 C C B . n B 2 10 5BU 10 10 10 5BU 5BU B . n B 2 11 C 11 11 11 C C B . n B 2 12 G 12 12 12 G G B . n B 2 13 A 13 13 13 A A B . n B 2 14 G 14 14 14 G G B . n B 2 15 C 15 15 15 C C B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 G 18 18 18 G G B . n B 2 19 U 19 19 19 U U B . n B 2 20 C 20 20 20 C C B . n B 2 21 G 21 21 21 G G B . n B 2 22 C 22 22 22 C C B . n C 1 1 U 1 1 1 U U C . n C 1 2 U 2 2 2 U U C . n C 1 3 G 3 3 3 G G C . n C 1 4 C 4 4 4 C C C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 C 7 7 7 C C C . n C 1 8 A 8 8 8 A A C . n C 1 9 C 9 9 9 C C C . n C 1 10 C 10 10 10 C C C . n C 1 11 5BU 11 11 11 5BU 5BU C . n C 1 12 C 12 12 12 C C C . n C 1 13 G 13 13 13 G G C . n C 1 14 A 14 14 14 A A C . n C 1 15 G 15 15 15 G G C . n C 1 16 C 16 16 16 C C C . n C 1 17 A 17 17 17 A A C . n C 1 18 A 18 18 18 A A C . n C 1 19 G 19 19 19 G G C . n C 1 20 U 20 20 20 U U C . n C 1 21 C 21 21 21 C C C . n C 1 22 G 22 22 22 G G C . n C 1 23 C 23 23 23 C C C . n D 3 1 G 1 1 1 G G D . n D 3 2 C 2 2 2 C C D . n D 3 3 G 3 3 3 G G D . n D 3 4 U 4 4 4 U U D . n D 3 5 C 5 5 5 C C D . n D 3 6 A 6 6 6 A A D . n D 3 7 C 7 7 7 C C D . n D 3 8 C 8 8 8 C C D . n D 3 9 5BU 9 9 9 5BU 5BU D . n D 3 10 C 10 10 10 C C D . n D 3 11 G 11 11 11 G G D . n D 3 12 A 12 12 12 A A D . n D 3 13 G 13 13 13 G G D . n D 3 14 C 14 14 14 C C D . n D 3 15 A 15 15 15 A A D . n D 3 16 A 16 16 16 A A D . n D 3 17 G 17 17 17 G G D . n D 3 18 U 18 18 18 U U D . n D 3 19 C 19 19 19 C C D . n D 3 20 G 20 20 20 G G D . n D 3 21 C 21 21 21 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 K 1 24 1 K K A . F 5 PAR 1 24 1 PAR PAR C . G 4 K 1 25 1 K K C . H 6 HOH 1 25 1 HOH HOH A . H 6 HOH 2 26 2 HOH HOH A . H 6 HOH 3 27 3 HOH HOH A . H 6 HOH 4 28 4 HOH HOH A . H 6 HOH 5 29 5 HOH HOH A . H 6 HOH 6 30 6 HOH HOH A . H 6 HOH 7 31 7 HOH HOH A . H 6 HOH 8 32 8 HOH HOH A . H 6 HOH 9 33 9 HOH HOH A . H 6 HOH 10 34 10 HOH HOH A . H 6 HOH 11 35 11 HOH HOH A . H 6 HOH 12 36 12 HOH HOH A . H 6 HOH 13 37 13 HOH HOH A . H 6 HOH 14 38 14 HOH HOH A . H 6 HOH 15 39 15 HOH HOH A . H 6 HOH 16 40 16 HOH HOH A . H 6 HOH 17 41 17 HOH HOH A . H 6 HOH 18 42 18 HOH HOH A . H 6 HOH 19 43 19 HOH HOH A . H 6 HOH 20 44 20 HOH HOH A . H 6 HOH 21 45 21 HOH HOH A . H 6 HOH 22 46 22 HOH HOH A . H 6 HOH 23 47 23 HOH HOH A . H 6 HOH 24 48 24 HOH HOH A . H 6 HOH 25 49 25 HOH HOH A . H 6 HOH 26 50 26 HOH HOH A . H 6 HOH 27 51 27 HOH HOH A . H 6 HOH 28 52 28 HOH HOH A . H 6 HOH 29 53 29 HOH HOH A . H 6 HOH 30 54 30 HOH HOH A . H 6 HOH 31 55 31 HOH HOH A . H 6 HOH 32 56 32 HOH HOH A . H 6 HOH 33 57 33 HOH HOH A . H 6 HOH 34 58 34 HOH HOH A . H 6 HOH 35 59 35 HOH HOH A . H 6 HOH 36 60 36 HOH HOH A . H 6 HOH 37 61 37 HOH HOH A . H 6 HOH 38 62 38 HOH HOH A . H 6 HOH 39 63 39 HOH HOH A . H 6 HOH 40 64 40 HOH HOH A . H 6 HOH 41 65 41 HOH HOH A . H 6 HOH 42 66 10 HOH HOH A . H 6 HOH 43 67 14 HOH HOH A . H 6 HOH 44 68 19 HOH HOH A . I 6 HOH 1 23 1 HOH HOH B . I 6 HOH 2 24 2 HOH HOH B . I 6 HOH 3 25 3 HOH HOH B . I 6 HOH 4 26 5 HOH HOH B . I 6 HOH 5 27 6 HOH HOH B . I 6 HOH 6 28 7 HOH HOH B . I 6 HOH 7 29 8 HOH HOH B . I 6 HOH 8 30 9 HOH HOH B . I 6 HOH 9 31 11 HOH HOH B . I 6 HOH 10 32 12 HOH HOH B . I 6 HOH 11 33 13 HOH HOH B . I 6 HOH 12 34 15 HOH HOH B . I 6 HOH 13 35 16 HOH HOH B . I 6 HOH 14 36 17 HOH HOH B . I 6 HOH 15 37 18 HOH HOH B . I 6 HOH 16 38 20 HOH HOH B . I 6 HOH 17 39 21 HOH HOH B . I 6 HOH 18 40 22 HOH HOH B . I 6 HOH 19 41 23 HOH HOH B . I 6 HOH 20 42 24 HOH HOH B . I 6 HOH 21 43 25 HOH HOH B . I 6 HOH 22 44 26 HOH HOH B . I 6 HOH 23 45 27 HOH HOH B . I 6 HOH 24 46 28 HOH HOH B . I 6 HOH 25 47 29 HOH HOH B . I 6 HOH 26 48 30 HOH HOH B . I 6 HOH 27 49 31 HOH HOH B . I 6 HOH 28 50 32 HOH HOH B . I 6 HOH 29 51 33 HOH HOH B . I 6 HOH 30 52 34 HOH HOH B . I 6 HOH 31 53 35 HOH HOH B . I 6 HOH 32 54 36 HOH HOH B . I 6 HOH 33 55 37 HOH HOH B . I 6 HOH 34 56 38 HOH HOH B . I 6 HOH 35 57 39 HOH HOH B . I 6 HOH 36 58 40 HOH HOH B . I 6 HOH 37 59 41 HOH HOH B . I 6 HOH 38 60 42 HOH HOH B . I 6 HOH 39 61 43 HOH HOH B . I 6 HOH 40 62 44 HOH HOH B . I 6 HOH 41 63 45 HOH HOH B . I 6 HOH 42 64 46 HOH HOH B . I 6 HOH 43 65 47 HOH HOH B . I 6 HOH 44 66 48 HOH HOH B . I 6 HOH 45 67 49 HOH HOH B . I 6 HOH 46 68 50 HOH HOH B . I 6 HOH 47 69 2 HOH HOH B . J 6 HOH 1 26 4 HOH HOH C . J 6 HOH 2 27 1 HOH HOH C . J 6 HOH 3 28 2 HOH HOH C . J 6 HOH 4 29 3 HOH HOH C . J 6 HOH 5 30 4 HOH HOH C . J 6 HOH 6 31 5 HOH HOH C . J 6 HOH 7 32 6 HOH HOH C . J 6 HOH 8 33 7 HOH HOH C . J 6 HOH 9 34 8 HOH HOH C . J 6 HOH 10 35 9 HOH HOH C . J 6 HOH 11 36 10 HOH HOH C . J 6 HOH 12 37 11 HOH HOH C . J 6 HOH 13 38 12 HOH HOH C . J 6 HOH 14 39 13 HOH HOH C . J 6 HOH 15 40 14 HOH HOH C . J 6 HOH 16 41 15 HOH HOH C . J 6 HOH 17 42 16 HOH HOH C . J 6 HOH 18 43 17 HOH HOH C . J 6 HOH 19 44 18 HOH HOH C . J 6 HOH 20 45 19 HOH HOH C . J 6 HOH 21 46 20 HOH HOH C . J 6 HOH 22 47 21 HOH HOH C . J 6 HOH 23 48 22 HOH HOH C . J 6 HOH 24 49 23 HOH HOH C . J 6 HOH 25 50 24 HOH HOH C . J 6 HOH 26 51 25 HOH HOH C . J 6 HOH 27 52 26 HOH HOH C . J 6 HOH 28 53 27 HOH HOH C . J 6 HOH 29 54 28 HOH HOH C . J 6 HOH 30 55 29 HOH HOH C . J 6 HOH 31 56 30 HOH HOH C . J 6 HOH 32 57 31 HOH HOH C . J 6 HOH 33 58 32 HOH HOH C . J 6 HOH 34 59 33 HOH HOH C . J 6 HOH 35 60 34 HOH HOH C . J 6 HOH 36 61 35 HOH HOH C . J 6 HOH 37 62 36 HOH HOH C . J 6 HOH 38 63 37 HOH HOH C . J 6 HOH 39 64 38 HOH HOH C . J 6 HOH 40 65 39 HOH HOH C . J 6 HOH 41 66 40 HOH HOH C . J 6 HOH 42 67 41 HOH HOH C . J 6 HOH 43 68 42 HOH HOH C . J 6 HOH 44 69 43 HOH HOH C . J 6 HOH 45 70 44 HOH HOH C . J 6 HOH 46 71 45 HOH HOH C . J 6 HOH 47 72 46 HOH HOH C . K 6 HOH 1 22 1 HOH HOH D . K 6 HOH 2 23 3 HOH HOH D . K 6 HOH 3 24 4 HOH HOH D . K 6 HOH 4 25 5 HOH HOH D . K 6 HOH 5 26 6 HOH HOH D . K 6 HOH 6 27 7 HOH HOH D . K 6 HOH 7 28 8 HOH HOH D . K 6 HOH 8 29 9 HOH HOH D . K 6 HOH 9 30 10 HOH HOH D . K 6 HOH 10 31 11 HOH HOH D . K 6 HOH 11 32 12 HOH HOH D . K 6 HOH 12 33 13 HOH HOH D . K 6 HOH 13 34 14 HOH HOH D . K 6 HOH 14 35 15 HOH HOH D . K 6 HOH 15 36 16 HOH HOH D . K 6 HOH 16 37 17 HOH HOH D . K 6 HOH 17 38 18 HOH HOH D . K 6 HOH 18 39 19 HOH HOH D . K 6 HOH 19 40 20 HOH HOH D . K 6 HOH 20 41 21 HOH HOH D . K 6 HOH 21 42 22 HOH HOH D . K 6 HOH 22 43 23 HOH HOH D . K 6 HOH 23 44 24 HOH HOH D . K 6 HOH 24 45 25 HOH HOH D . K 6 HOH 25 46 26 HOH HOH D . K 6 HOH 26 47 27 HOH HOH D . K 6 HOH 27 48 28 HOH HOH D . K 6 HOH 28 49 29 HOH HOH D . K 6 HOH 29 50 30 HOH HOH D . K 6 HOH 30 51 31 HOH HOH D . K 6 HOH 31 52 32 HOH HOH D . K 6 HOH 32 53 33 HOH HOH D . K 6 HOH 33 54 34 HOH HOH D . K 6 HOH 34 55 35 HOH HOH D . K 6 HOH 35 56 36 HOH HOH D . K 6 HOH 36 57 37 HOH HOH D . K 6 HOH 37 58 38 HOH HOH D . K 6 HOH 38 59 39 HOH HOH D . K 6 HOH 39 60 40 HOH HOH D . K 6 HOH 40 61 41 HOH HOH D . K 6 HOH 41 62 42 HOH HOH D . K 6 HOH 42 63 43 HOH HOH D . K 6 HOH 43 64 44 HOH HOH D . K 6 HOH 44 65 45 HOH HOH D . K 6 HOH 45 66 46 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A U 1 ? OP3 ? A U 1 OP3 2 1 Y 0 A U 1 ? P ? A U 1 P 3 1 Y 0 A U 1 ? OP1 ? A U 1 OP1 4 1 Y 0 A U 1 ? OP2 ? A U 1 OP2 5 1 Y 0 C U 1 ? OP3 ? C U 1 OP3 6 1 Y 0 C U 1 ? P ? C U 1 P 7 1 Y 0 C U 1 ? OP1 ? C U 1 OP1 8 1 Y 0 C U 1 ? OP2 ? C U 1 OP2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 AMoRE . ? program 'Jorge Navaza' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _cell.length_a 71.189 _cell.length_b 77.380 _cell.length_c 56.322 _cell.angle_alpha 90.000 _cell.angle_beta 115.120 _cell.angle_gamma 90.000 _cell.entry_id 3BNR _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3BNR _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3BNR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;Sodium cacodylate, KCl, spermine tetrachloride, paromomycin, 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 KCl ? ? ? 1 3 1 'Sodium cacodylate' ? ? ? 1 4 2 MPD ? ? ? 1 5 2 KCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-05-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91625 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_wavelength_list 0.91625 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 # _reflns.entry_id 3BNR _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50.995 _reflns.number_obs 16388 _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_netI_over_sigmaI 2.700 _reflns.pdbx_Rsym_value 0.116 _reflns.pdbx_redundancy 6.900 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.10 2.21 ? 16679 ? 0.378 1.5 0.378 ? 7.10 ? 2359 100.00 ? 1 2.21 2.35 ? 16072 ? 0.276 2.4 0.276 ? 7.10 ? 2277 100.00 ? 2 2.35 2.51 ? 14963 ? 0.202 3.0 0.202 ? 7.00 ? 2131 100.00 ? 3 2.51 2.71 ? 13791 ? 0.155 3.3 0.155 ? 7.00 ? 1970 100.00 ? 4 2.71 2.97 ? 12731 ? 0.122 3.6 0.122 ? 6.90 ? 1840 100.00 ? 5 2.97 3.32 ? 11208 ? 0.109 3.2 0.109 ? 6.80 ? 1642 99.90 ? 6 3.32 3.83 ? 9844 ? 0.114 3.2 0.114 ? 6.70 ? 1464 99.90 ? 7 3.83 4.70 ? 7978 ? 0.108 4.6 0.108 ? 6.50 ? 1221 99.10 ? 8 4.70 6.64 ? 5976 ? 0.092 5.8 0.092 ? 6.20 ? 963 99.80 ? 9 6.64 50.99 ? 3289 ? 0.089 6.0 0.089 ? 6.30 ? 521 96.00 ? 10 # _refine.entry_id 3BNR _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 50.995 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.700 _refine.ls_number_reflns_obs 16147 _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.245 _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 1609 _refine.B_iso_mean 36.922 _refine.solvent_model_param_bsol 69.092 _refine.aniso_B[1][1] -5.934 _refine.aniso_B[2][2] 10.754 _refine.aniso_B[3][3] -4.820 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -7.116 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.overall_FOM_work_R_set 0.828 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1892 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 2119 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 50.995 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.004 1.500 ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 0.9 2.000 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 rna_free.param ? 'X-RAY DIFFRACTION' 2 bru.param ? 'X-RAY DIFFRACTION' 3 par2_xplor.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 5 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3BNR _struct.title ;Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BNR _struct_keywords.text 'ribosome, decoding site, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3BNR 3BNR 1 ? ? ? 2 PDB 3BNR 3BNR 2 ? ? ? 3 PDB 3BNR 3BNR 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BNR A 1 ? 23 ? 3BNR 1 ? 23 ? 1 23 2 1 3BNR C 1 ? 23 ? 3BNR 1 ? 23 ? 1 23 3 2 3BNR B 1 ? 22 ? 3BNR 1 ? 22 ? 1 22 4 3 3BNR D 1 ? 21 ? 3BNR 1 ? 21 ? 1 21 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,H,I 2 1 C,D,F,G,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 10 "O3'" ? ? ? 1_555 A 5BU 11 P ? ? A C 10 A 5BU 11 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? A 5BU 11 "O3'" ? ? ? 1_555 A C 12 P ? ? A 5BU 11 A C 12 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale3 covale both ? B C 9 "O3'" ? ? ? 1_555 B 5BU 10 P ? ? B C 9 B 5BU 10 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale4 covale both ? B 5BU 10 "O3'" ? ? ? 1_555 B C 11 P ? ? B 5BU 10 B C 11 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? C C 10 "O3'" ? ? ? 1_555 C 5BU 11 P ? ? C C 10 C 5BU 11 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale6 covale both ? C 5BU 11 "O3'" ? ? ? 1_555 C C 12 P ? ? C 5BU 11 C C 12 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale7 covale both ? D C 8 "O3'" ? ? ? 1_555 D 5BU 9 P ? ? D C 8 D 5BU 9 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale8 covale both ? D 5BU 9 "O3'" ? ? ? 1_555 D C 10 P ? ? D 5BU 9 D C 10 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A C 10 O2 ? ? ? 1_555 G K . K ? ? A C 10 C K 25 1_555 ? ? ? ? ? ? ? 2.715 ? ? metalc2 metalc ? ? A C 23 "O2'" ? ? ? 1_555 E K . K ? ? A C 23 A K 24 1_555 ? ? ? ? ? ? ? 2.884 ? ? metalc3 metalc ? ? A C 23 O2 ? ? ? 1_555 E K . K ? ? A C 23 A K 24 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc4 metalc ? ? E K . K ? ? ? 1_555 I HOH . O ? ? A K 24 B HOH 24 1_555 ? ? ? ? ? ? ? 2.953 ? ? metalc5 metalc ? ? E K . K ? ? ? 1_555 C C 10 O2 ? ? A K 24 C C 10 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc6 metalc ? ? E K . K ? ? ? 1_555 K HOH . O ? ? A K 24 D HOH 27 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc7 metalc ? ? E K . K ? ? ? 1_555 K HOH . O ? ? A K 24 D HOH 40 1_555 ? ? ? ? ? ? ? 2.891 ? ? metalc8 metalc ? ? H HOH . O ? ? ? 1_555 G K . K ? ? A HOH 26 C K 25 1_555 ? ? ? ? ? ? ? 2.944 ? ? metalc9 metalc ? ? I HOH . O ? ? ? 1_555 G K . K ? ? B HOH 25 C K 25 1_555 ? ? ? ? ? ? ? 2.976 ? ? metalc10 metalc ? ? C C 23 "O2'" ? ? ? 1_555 G K . K ? ? C C 23 C K 25 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc11 metalc ? ? C C 23 O2 ? ? ? 1_555 G K . K ? ? C C 23 C K 25 1_555 ? ? ? ? ? ? ? 2.828 ? ? metalc12 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? C K 25 D HOH 24 1_555 ? ? ? ? ? ? ? 2.817 ? ? hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 21 N1 ? ? A C 4 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 21 O6 ? ? A C 4 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 21 N2 ? ? A C 4 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 5 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 5 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 5 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 19 O4 ? ? A U 6 B U 19 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A U 6 O2 ? ? ? 1_555 B U 19 N3 ? ? A U 6 B U 19 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 8 N1 ? ? ? 1_555 B A 17 N6 ? ? A A 8 B A 17 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 B C 15 O2 ? ? A C 9 B C 15 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog17 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 10 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 10 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 10 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A 5BU 11 N3 ? ? ? 1_555 B A 13 N1 ? ? A 5BU 11 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A 5BU 11 O4 ? ? ? 1_555 B A 13 N6 ? ? A 5BU 11 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 12 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 12 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 12 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 13 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 13 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 13 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 14 N1 ? ? ? 1_555 B 5BU 10 N3 ? ? A A 14 B 5BU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 B 5BU 10 O4 ? ? A A 14 B 5BU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 15 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 15 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 15 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 19 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 19 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 19 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 5 O4 ? ? A U 20 B U 5 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog37 hydrog ? ? A U 20 O2 ? ? ? 1_555 B U 5 N3 ? ? A U 20 B U 5 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog38 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 21 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 21 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 21 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 22 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 22 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 22 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 23 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 23 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 23 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 3 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 3 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 3 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 20 N1 ? ? C C 4 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 20 O6 ? ? C C 4 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 20 N2 ? ? C C 4 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 19 N3 ? ? C G 5 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 19 O2 ? ? C G 5 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 19 N4 ? ? C G 5 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C U 6 N3 ? ? ? 1_555 D U 18 O4 ? ? C U 6 D U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog57 hydrog ? ? C U 6 O2 ? ? ? 1_555 D U 18 N3 ? ? C U 6 D U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog58 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 17 N1 ? ? C C 7 D G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 17 O6 ? ? C C 7 D G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 17 N2 ? ? C C 7 D G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C A 8 N6 ? ? ? 1_555 D C 14 O2 ? ? C A 8 D C 14 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog62 hydrog ? ? C A 8 N1 ? ? ? 1_555 D A 16 N6 ? ? C A 8 D A 16 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog63 hydrog ? ? C C 9 N4 ? ? ? 1_555 D C 14 O2 ? ? C C 9 D C 14 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog64 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 13 N1 ? ? C C 10 D G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 13 O6 ? ? C C 10 D G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 13 N2 ? ? C C 10 D G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C 5BU 11 N3 ? ? ? 1_555 D A 12 N1 ? ? C 5BU 11 D A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C 5BU 11 O4 ? ? ? 1_555 D A 12 N6 ? ? C 5BU 11 D A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 11 N1 ? ? C C 12 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 11 O6 ? ? C C 12 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 11 N2 ? ? C C 12 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 13 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 13 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 13 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C A 14 N1 ? ? ? 1_555 D 5BU 9 N3 ? ? C A 14 D 5BU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C A 14 N6 ? ? ? 1_555 D 5BU 9 O4 ? ? C A 14 D 5BU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C G 15 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 15 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C G 15 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 15 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 15 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 15 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C G 19 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 19 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C G 19 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 19 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C G 19 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 19 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C U 20 N3 ? ? ? 1_555 D U 4 O4 ? ? C U 20 D U 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog84 hydrog ? ? C U 20 O2 ? ? ? 1_555 D U 4 N3 ? ? C U 20 D U 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog85 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 21 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 21 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 21 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C G 22 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 22 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C G 22 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 22 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C G 22 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 22 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C C 23 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 23 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C C 23 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 23 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C C 23 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 23 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A C 10 ? A C 10 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? H HOH . ? A HOH 26 ? 1_555 82.0 ? 2 O2 ? A C 10 ? A C 10 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? I HOH . ? B HOH 25 ? 1_555 78.7 ? 3 O ? H HOH . ? A HOH 26 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? I HOH . ? B HOH 25 ? 1_555 158.4 ? 4 O2 ? A C 10 ? A C 10 ? 1_555 K ? G K . ? C K 25 ? 1_555 "O2'" ? C C 23 ? C C 23 ? 1_555 93.1 ? 5 O ? H HOH . ? A HOH 26 ? 1_555 K ? G K . ? C K 25 ? 1_555 "O2'" ? C C 23 ? C C 23 ? 1_555 106.4 ? 6 O ? I HOH . ? B HOH 25 ? 1_555 K ? G K . ? C K 25 ? 1_555 "O2'" ? C C 23 ? C C 23 ? 1_555 84.5 ? 7 O2 ? A C 10 ? A C 10 ? 1_555 K ? G K . ? C K 25 ? 1_555 O2 ? C C 23 ? C C 23 ? 1_555 153.9 ? 8 O ? H HOH . ? A HOH 26 ? 1_555 K ? G K . ? C K 25 ? 1_555 O2 ? C C 23 ? C C 23 ? 1_555 77.0 ? 9 O ? I HOH . ? B HOH 25 ? 1_555 K ? G K . ? C K 25 ? 1_555 O2 ? C C 23 ? C C 23 ? 1_555 124.2 ? 10 "O2'" ? C C 23 ? C C 23 ? 1_555 K ? G K . ? C K 25 ? 1_555 O2 ? C C 23 ? C C 23 ? 1_555 78.4 ? 11 O2 ? A C 10 ? A C 10 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? K HOH . ? D HOH 24 ? 1_555 97.8 ? 12 O ? H HOH . ? A HOH 26 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? K HOH . ? D HOH 24 ? 1_555 77.2 ? 13 O ? I HOH . ? B HOH 25 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? K HOH . ? D HOH 24 ? 1_555 95.7 ? 14 "O2'" ? C C 23 ? C C 23 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? K HOH . ? D HOH 24 ? 1_555 168.9 ? 15 O2 ? C C 23 ? C C 23 ? 1_555 K ? G K . ? C K 25 ? 1_555 O ? K HOH . ? D HOH 24 ? 1_555 92.5 ? 16 "O2'" ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O2 ? A C 23 ? A C 23 ? 1_555 82.6 ? 17 "O2'" ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 108.1 ? 18 O2 ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 81.7 ? 19 "O2'" ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O2 ? C C 10 ? C C 10 ? 1_555 90.4 ? 20 O2 ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O2 ? C C 10 ? C C 10 ? 1_555 158.6 ? 21 O ? I HOH . ? B HOH 24 ? 1_555 K ? E K . ? A K 24 ? 1_555 O2 ? C C 10 ? C C 10 ? 1_555 81.4 ? 22 "O2'" ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 27 ? 1_555 89.7 ? 23 O2 ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 27 ? 1_555 122.4 ? 24 O ? I HOH . ? B HOH 24 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 27 ? 1_555 152.4 ? 25 O2 ? C C 10 ? C C 10 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 27 ? 1_555 77.5 ? 26 "O2'" ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 40 ? 1_555 176.4 ? 27 O2 ? A C 23 ? A C 23 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 40 ? 1_555 94.1 ? 28 O ? I HOH . ? B HOH 24 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 40 ? 1_555 72.7 ? 29 O2 ? C C 10 ? C C 10 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 40 ? 1_555 93.1 ? 30 O ? K HOH . ? D HOH 27 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? K HOH . ? D HOH 40 ? 1_555 90.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C PAR 24 ? 6 'BINDING SITE FOR RESIDUE PAR C 24' AC2 Software C K 25 ? 3 'BINDING SITE FOR RESIDUE K C 25' AC3 Software A K 24 ? 3 'BINDING SITE FOR RESIDUE K A 24' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH J . ? HOH C 29 . ? 1_555 ? 2 AC1 6 HOH J . ? HOH C 40 . ? 1_555 ? 3 AC1 6 HOH J . ? HOH C 42 . ? 1_555 ? 4 AC1 6 HOH J . ? HOH C 45 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH C 49 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH C 59 . ? 1_555 ? 7 AC2 3 HOH H . ? HOH A 26 . ? 1_555 ? 8 AC2 3 HOH I . ? HOH B 25 . ? 1_555 ? 9 AC2 3 HOH K . ? HOH D 24 . ? 1_555 ? 10 AC3 3 HOH I . ? HOH B 24 . ? 1_555 ? 11 AC3 3 HOH K . ? HOH D 27 . ? 1_555 ? 12 AC3 3 HOH K . ? HOH D 40 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A U 1 ? ? OP3 A U 1 ? ? 1.518 1.607 -0.089 0.012 N 2 1 P B U 1 ? ? OP3 B U 1 ? ? 1.520 1.607 -0.087 0.012 N 3 1 P C U 1 ? ? OP3 C U 1 ? ? 1.520 1.607 -0.087 0.012 N 4 1 P D G 1 ? ? OP3 D G 1 ? ? 1.521 1.607 -0.086 0.012 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 11 A 5BU 11 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 10 B 5BU 10 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 3 C 5BU 11 C 5BU 11 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 4 D 5BU 9 D 5BU 9 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 K K K N N 148 PAR C11 C N S 149 PAR O11 O N N 150 PAR C21 C N R 151 PAR N21 N N N 152 PAR C31 C N R 153 PAR O31 O N N 154 PAR C41 C N S 155 PAR O41 O N N 156 PAR C51 C N R 157 PAR O51 O N N 158 PAR C61 C N N 159 PAR O61 O N N 160 PAR C12 C N R 161 PAR N12 N N N 162 PAR C22 C N N 163 PAR C32 C N S 164 PAR N32 N N N 165 PAR C42 C N R 166 PAR C52 C N R 167 PAR O52 O N N 168 PAR C62 C N S 169 PAR O62 O N N 170 PAR C13 C N S 171 PAR C23 C N R 172 PAR O23 O N N 173 PAR C33 C N S 174 PAR O33 O N N 175 PAR C43 C N R 176 PAR O43 O N N 177 PAR C53 C N N 178 PAR O53 O N N 179 PAR C14 C N R 180 PAR C24 C N R 181 PAR N24 N N N 182 PAR C34 C N R 183 PAR O34 O N N 184 PAR C44 C N S 185 PAR O44 O N N 186 PAR C54 C N S 187 PAR O54 O N N 188 PAR C64 C N N 189 PAR N64 N N N 190 PAR H11 H N N 191 PAR H21 H N N 192 PAR HN21 H N N 193 PAR HN22 H N N 194 PAR H31 H N N 195 PAR HO31 H N N 196 PAR H41 H N N 197 PAR HO41 H N N 198 PAR H51 H N N 199 PAR H611 H N N 200 PAR H612 H N N 201 PAR HO61 H N N 202 PAR H12 H N N 203 PAR H121 H N N 204 PAR H122 H N N 205 PAR H221 H N N 206 PAR H222 H N N 207 PAR H32 H N N 208 PAR H321 H N N 209 PAR H322 H N N 210 PAR H42 H N N 211 PAR H52 H N N 212 PAR H62 H N N 213 PAR HO62 H N N 214 PAR H13 H N N 215 PAR H23 H N N 216 PAR HO23 H N N 217 PAR H33 H N N 218 PAR H43 H N N 219 PAR H531 H N N 220 PAR H532 H N N 221 PAR HO53 H N N 222 PAR H14 H N N 223 PAR H24 H N N 224 PAR H241 H N N 225 PAR H242 H N N 226 PAR H34 H N N 227 PAR HO34 H N N 228 PAR H44 H N N 229 PAR HO44 H N N 230 PAR H54 H N N 231 PAR H641 H N N 232 PAR H642 H N N 233 PAR HN61 H N N 234 PAR HN62 H N N 235 U OP3 O N N 236 U P P N N 237 U OP1 O N N 238 U OP2 O N N 239 U "O5'" O N N 240 U "C5'" C N N 241 U "C4'" C N R 242 U "O4'" O N N 243 U "C3'" C N S 244 U "O3'" O N N 245 U "C2'" C N R 246 U "O2'" O N N 247 U "C1'" C N R 248 U N1 N N N 249 U C2 C N N 250 U O2 O N N 251 U N3 N N N 252 U C4 C N N 253 U O4 O N N 254 U C5 C N N 255 U C6 C N N 256 U HOP3 H N N 257 U HOP2 H N N 258 U "H5'" H N N 259 U "H5''" H N N 260 U "H4'" H N N 261 U "H3'" H N N 262 U "HO3'" H N N 263 U "H2'" H N N 264 U "HO2'" H N N 265 U "H1'" H N N 266 U H3 H N N 267 U H5 H N N 268 U H6 H N N 269 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 PAR C11 O11 sing N N 153 PAR C11 C21 sing N N 154 PAR C11 O51 sing N N 155 PAR C11 H11 sing N N 156 PAR O11 C42 sing N N 157 PAR C21 N21 sing N N 158 PAR C21 C31 sing N N 159 PAR C21 H21 sing N N 160 PAR N21 HN21 sing N N 161 PAR N21 HN22 sing N N 162 PAR C31 O31 sing N N 163 PAR C31 C41 sing N N 164 PAR C31 H31 sing N N 165 PAR O31 HO31 sing N N 166 PAR C41 O41 sing N N 167 PAR C41 C51 sing N N 168 PAR C41 H41 sing N N 169 PAR O41 HO41 sing N N 170 PAR C51 O51 sing N N 171 PAR C51 C61 sing N N 172 PAR C51 H51 sing N N 173 PAR C61 O61 sing N N 174 PAR C61 H611 sing N N 175 PAR C61 H612 sing N N 176 PAR O61 HO61 sing N N 177 PAR C12 N12 sing N N 178 PAR C12 C22 sing N N 179 PAR C12 C62 sing N N 180 PAR C12 H12 sing N N 181 PAR N12 H121 sing N N 182 PAR N12 H122 sing N N 183 PAR C22 C32 sing N N 184 PAR C22 H221 sing N N 185 PAR C22 H222 sing N N 186 PAR C32 N32 sing N N 187 PAR C32 C42 sing N N 188 PAR C32 H32 sing N N 189 PAR N32 H321 sing N N 190 PAR N32 H322 sing N N 191 PAR C42 C52 sing N N 192 PAR C42 H42 sing N N 193 PAR C52 O52 sing N N 194 PAR C52 C62 sing N N 195 PAR C52 H52 sing N N 196 PAR O52 C13 sing N N 197 PAR C62 O62 sing N N 198 PAR C62 H62 sing N N 199 PAR O62 HO62 sing N N 200 PAR C13 C23 sing N N 201 PAR C13 O43 sing N N 202 PAR C13 H13 sing N N 203 PAR C23 O23 sing N N 204 PAR C23 C33 sing N N 205 PAR C23 H23 sing N N 206 PAR O23 HO23 sing N N 207 PAR C33 O33 sing N N 208 PAR C33 C43 sing N N 209 PAR C33 H33 sing N N 210 PAR O33 C14 sing N N 211 PAR C43 O43 sing N N 212 PAR C43 C53 sing N N 213 PAR C43 H43 sing N N 214 PAR C53 O53 sing N N 215 PAR C53 H531 sing N N 216 PAR C53 H532 sing N N 217 PAR O53 HO53 sing N N 218 PAR C14 C24 sing N N 219 PAR C14 O54 sing N N 220 PAR C14 H14 sing N N 221 PAR C24 N24 sing N N 222 PAR C24 C34 sing N N 223 PAR C24 H24 sing N N 224 PAR N24 H241 sing N N 225 PAR N24 H242 sing N N 226 PAR C34 O34 sing N N 227 PAR C34 C44 sing N N 228 PAR C34 H34 sing N N 229 PAR O34 HO34 sing N N 230 PAR C44 O44 sing N N 231 PAR C44 C54 sing N N 232 PAR C44 H44 sing N N 233 PAR O44 HO44 sing N N 234 PAR C54 O54 sing N N 235 PAR C54 C64 sing N N 236 PAR C54 H54 sing N N 237 PAR C64 N64 sing N N 238 PAR C64 H641 sing N N 239 PAR C64 H642 sing N N 240 PAR N64 HN61 sing N N 241 PAR N64 HN62 sing N N 242 U OP3 P sing N N 243 U OP3 HOP3 sing N N 244 U P OP1 doub N N 245 U P OP2 sing N N 246 U P "O5'" sing N N 247 U OP2 HOP2 sing N N 248 U "O5'" "C5'" sing N N 249 U "C5'" "C4'" sing N N 250 U "C5'" "H5'" sing N N 251 U "C5'" "H5''" sing N N 252 U "C4'" "O4'" sing N N 253 U "C4'" "C3'" sing N N 254 U "C4'" "H4'" sing N N 255 U "O4'" "C1'" sing N N 256 U "C3'" "O3'" sing N N 257 U "C3'" "C2'" sing N N 258 U "C3'" "H3'" sing N N 259 U "O3'" "HO3'" sing N N 260 U "C2'" "O2'" sing N N 261 U "C2'" "C1'" sing N N 262 U "C2'" "H2'" sing N N 263 U "O2'" "HO2'" sing N N 264 U "C1'" N1 sing N N 265 U "C1'" "H1'" sing N N 266 U N1 C2 sing N N 267 U N1 C6 sing N N 268 U C2 O2 doub N N 269 U C2 N3 sing N N 270 U N3 C4 sing N N 271 U N3 H3 sing N N 272 U C4 O4 doub N N 273 U C4 C5 sing N N 274 U C5 C6 doub N N 275 U C5 H5 sing N N 276 U C6 H6 sing N N 277 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BNR 'double helix' 3BNR 'a-form double helix' 3BNR 'bulge loop' 3BNR 'mismatched base pair' 3BNR 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 22 1_555 -0.099 -0.176 0.411 5.229 -10.959 1.134 1 A_G3:C22_B A 3 ? B 22 ? 19 1 1 A C 4 1_555 B G 21 1_555 -0.067 0.020 0.146 7.847 -10.034 5.896 2 A_C4:G21_B A 4 ? B 21 ? 19 1 1 A G 5 1_555 B C 20 1_555 -0.203 -0.107 -0.141 -3.804 -17.102 5.819 3 A_G5:C20_B A 5 ? B 20 ? 19 1 1 A U 6 1_555 B U 19 1_555 2.216 -1.745 0.034 -2.638 -15.061 2.130 4 A_U6:U19_B A 6 ? B 19 ? 16 1 1 A C 7 1_555 B G 18 1_555 0.388 -0.353 0.168 -8.856 -8.473 0.910 5 A_C7:G18_B A 7 ? B 18 ? 19 1 1 A A 8 1_555 B A 17 1_555 2.300 1.360 -0.165 -10.167 1.143 -10.184 6 A_A8:A17_B A 8 ? B 17 ? ? 1 1 A C 9 1_555 B C 15 1_555 -4.183 -1.710 0.609 17.773 -14.155 5.673 7 A_C9:C15_B A 9 ? B 15 ? ? 1 1 A C 10 1_555 B G 14 1_555 0.015 -0.101 0.116 11.347 -18.386 -0.952 8 A_C10:G14_B A 10 ? B 14 ? 19 1 1 A 5BU 11 1_555 B A 13 1_555 -0.564 -0.214 0.219 4.066 -13.642 -0.792 9 A_5BU11:A13_B A 11 ? B 13 ? 20 1 1 A C 12 1_555 B G 12 1_555 0.191 -0.173 -0.110 6.344 -12.317 0.141 10 A_C12:G12_B A 12 ? B 12 ? 19 1 1 A G 13 1_555 B C 11 1_555 -0.156 -0.219 -0.126 -6.733 -9.131 2.162 11 A_G13:C11_B A 13 ? B 11 ? 19 1 1 A A 14 1_555 B 5BU 10 1_555 0.236 -0.204 0.039 -9.184 -6.243 2.938 12 A_A14:5BU10_B A 14 ? B 10 ? 20 1 1 A G 15 1_555 B C 9 1_555 -0.167 0.092 -0.491 -15.482 -2.261 0.002 13 A_G15:C9_B A 15 ? B 9 ? 19 1 1 A G 19 1_555 B C 6 1_555 -0.178 -0.263 0.280 2.644 -14.698 1.917 14 A_G19:C6_B A 19 ? B 6 ? 19 1 1 A U 20 1_555 B U 5 1_555 2.623 -1.906 0.083 -3.003 -17.438 0.515 15 A_U20:U5_B A 20 ? B 5 ? 16 1 1 A C 21 1_555 B G 4 1_555 0.197 -0.368 0.203 -2.592 -13.254 0.937 16 A_C21:G4_B A 21 ? B 4 ? 19 1 1 A G 22 1_555 B C 3 1_555 -0.189 -0.255 0.088 -4.149 -8.176 -0.399 17 A_G22:C3_B A 22 ? B 3 ? 19 1 1 A C 23 1_555 B G 2 1_555 0.230 -0.288 0.108 -3.631 -5.120 0.683 18 A_C23:G2_B A 23 ? B 2 ? 19 1 1 C G 3 1_555 D C 21 1_555 0.069 -0.240 0.076 -2.497 -5.741 0.734 19 C_G3:C21_D C 3 ? D 21 ? 19 1 1 C C 4 1_555 D G 20 1_555 0.586 -0.186 -0.027 6.797 -8.768 2.196 20 C_C4:G20_D C 4 ? D 20 ? 19 1 1 C G 5 1_555 D C 19 1_555 -0.347 -0.280 -0.096 -2.109 -18.011 3.920 21 C_G5:C19_D C 5 ? D 19 ? 19 1 1 C U 6 1_555 D U 18 1_555 2.481 -1.878 0.174 -8.270 -14.040 2.666 22 C_U6:U18_D C 6 ? D 18 ? 16 1 1 C C 7 1_555 D G 17 1_555 0.365 -0.176 0.148 -8.316 -14.830 1.714 23 C_C7:G17_D C 7 ? D 17 ? 19 1 1 C A 8 1_555 D A 16 1_555 2.222 1.413 -0.275 -15.734 0.328 -11.916 24 C_A8:A16_D C 8 ? D 16 ? ? 1 1 C C 9 1_555 D C 14 1_555 -4.160 -1.644 0.658 16.077 -15.101 8.767 25 C_C9:C14_D C 9 ? D 14 ? ? 1 1 C C 10 1_555 D G 13 1_555 0.253 -0.131 0.145 11.755 -17.238 0.294 26 C_C10:G13_D C 10 ? D 13 ? 19 1 1 C 5BU 11 1_555 D A 12 1_555 -0.294 -0.258 0.026 5.128 -14.504 0.804 27 C_5BU11:A12_D C 11 ? D 12 ? 20 1 1 C C 12 1_555 D G 11 1_555 0.102 -0.288 -0.010 4.321 -14.201 1.474 28 C_C12:G11_D C 12 ? D 11 ? 19 1 1 C G 13 1_555 D C 10 1_555 -0.233 -0.161 0.137 -3.437 -9.920 1.261 29 C_G13:C10_D C 13 ? D 10 ? 19 1 1 C A 14 1_555 D 5BU 9 1_555 0.101 -0.264 -0.006 -7.301 -8.886 1.572 30 C_A14:5BU9_D C 14 ? D 9 ? 20 1 1 C G 15 1_555 D C 8 1_555 -0.082 -0.077 -0.238 -13.913 -7.268 1.583 31 C_G15:C8_D C 15 ? D 8 ? 19 1 1 C G 19 1_555 D C 5 1_555 -0.420 -0.385 0.017 -0.670 -13.254 0.599 32 C_G19:C5_D C 19 ? D 5 ? 19 1 1 C U 20 1_555 D U 4 1_555 2.422 -1.806 0.101 -5.495 -14.878 4.180 33 C_U20:U4_D C 20 ? D 4 ? 16 1 1 C C 21 1_555 D G 3 1_555 0.189 -0.129 0.038 -0.182 -10.038 1.336 34 C_C21:G3_D C 21 ? D 3 ? 19 1 1 C G 22 1_555 D C 2 1_555 -0.053 0.036 0.058 -7.462 -11.160 -0.763 35 C_G22:C2_D C 22 ? D 2 ? 19 1 1 C C 23 1_555 D G 1 1_555 0.271 -0.250 0.027 -3.864 0.413 -1.078 36 C_C23:G1_D C 23 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 22 1_555 A C 4 1_555 B G 21 1_555 0.095 -1.415 3.179 0.535 3.468 33.767 -2.952 -0.082 3.024 5.951 -0.919 33.943 1 AA_G3C4:G21C22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A C 4 1_555 B G 21 1_555 A G 5 1_555 B C 20 1_555 0.479 -1.753 3.484 2.814 11.832 27.384 -5.765 -0.365 2.559 23.575 -5.606 29.916 2 AA_C4G5:C20G21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A G 5 1_555 B C 20 1_555 A U 6 1_555 B U 19 1_555 0.051 -1.147 3.240 -0.882 2.376 44.988 -1.707 -0.145 3.177 3.102 1.152 45.055 3 AA_G5U6:U19C20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A U 6 1_555 B U 19 1_555 A C 7 1_555 B G 18 1_555 0.215 -2.379 3.201 5.990 4.746 27.621 -5.803 0.820 2.747 9.707 -12.252 28.639 4 AA_U6C7:G18U19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A C 7 1_555 B G 18 1_555 A A 8 1_555 B A 17 1_555 -1.555 -1.971 3.248 6.272 8.047 31.277 -4.691 3.689 2.336 14.452 -11.265 32.860 5 AA_C7A8:A17G18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A A 8 1_555 B A 17 1_555 A C 9 1_555 B C 15 1_555 3.635 0.614 2.744 -12.919 20.339 24.370 -1.118 -7.565 0.979 38.254 24.298 34.142 6 AA_A8C9:C15A17_BB A 8 ? B 17 ? A 9 ? B 15 ? 1 A C 9 1_555 B C 15 1_555 A C 10 1_555 B G 14 1_555 -0.140 -0.710 3.631 1.296 6.205 51.511 -1.270 0.255 3.525 7.109 -1.485 51.873 7 AA_C9C10:G14C15_BB A 9 ? B 15 ? A 10 ? B 14 ? 1 A C 10 1_555 B G 14 1_555 A 5BU 11 1_555 B A 13 1_555 -0.527 -2.072 3.375 -3.247 5.491 27.936 -5.406 0.346 2.963 11.191 6.616 28.641 8 AA_C105BU11:A13G14_BB A 10 ? B 14 ? A 11 ? B 13 ? 1 A 5BU 11 1_555 B A 13 1_555 A C 12 1_555 B G 12 1_555 -0.168 -1.502 3.171 1.092 3.515 34.524 -3.026 0.441 3.002 5.901 -1.833 34.713 9 AA_5BU11C12:G12A13_BB A 11 ? B 13 ? A 12 ? B 12 ? 1 A C 12 1_555 B G 12 1_555 A G 13 1_555 B C 11 1_555 0.423 -1.769 3.550 -0.041 10.598 29.472 -5.277 -0.793 2.763 20.033 0.077 31.279 10 AA_C12G13:C11G12_BB A 12 ? B 12 ? A 13 ? B 11 ? 1 A G 13 1_555 B C 11 1_555 A A 14 1_555 B 5BU 10 1_555 0.444 -1.910 3.212 -0.727 3.636 32.608 -3.974 -0.904 2.977 6.449 1.290 32.813 11 AA_G13A14:5BU10C11_BB A 13 ? B 11 ? A 14 ? B 10 ? 1 A A 14 1_555 B 5BU 10 1_555 A G 15 1_555 B C 9 1_555 0.305 -2.427 3.507 6.786 6.562 30.845 -5.551 0.670 2.941 11.990 -12.399 32.223 12 AA_A14G15:C95BU10_BB A 14 ? B 10 ? A 15 ? B 9 ? 1 A G 19 1_555 B C 6 1_555 A U 20 1_555 B U 5 1_555 -0.245 -0.836 3.440 1.738 5.850 51.060 -1.379 0.406 3.323 6.759 -2.008 51.399 13 AA_G19U20:U5C6_BB A 19 ? B 6 ? A 20 ? B 5 ? 1 A U 20 1_555 B U 5 1_555 A C 21 1_555 B G 4 1_555 0.348 -1.702 2.956 5.892 5.880 23.534 -5.444 0.702 2.477 13.871 -13.900 24.943 14 AA_U20C21:G4U5_BB A 20 ? B 5 ? A 21 ? B 4 ? 1 A C 21 1_555 B G 4 1_555 A G 22 1_555 B C 3 1_555 0.494 -1.949 3.163 1.873 8.071 25.437 -6.068 -0.640 2.467 17.740 -4.116 26.731 15 AA_C21G22:C3G4_BB A 21 ? B 4 ? A 22 ? B 3 ? 1 A G 22 1_555 B C 3 1_555 A C 23 1_555 B G 2 1_555 0.249 -2.195 3.280 3.189 1.967 36.444 -3.760 0.036 3.171 3.134 -5.083 36.629 16 AA_G22C23:G2C3_BB A 22 ? B 3 ? A 23 ? B 2 ? 1 C G 3 1_555 D C 21 1_555 C C 4 1_555 D G 20 1_555 -0.226 -1.204 3.027 0.012 8.391 32.960 -3.244 0.389 2.650 14.499 -0.021 33.982 17 CC_G3C4:G20C21_DD C 3 ? D 21 ? C 4 ? D 20 ? 1 C C 4 1_555 D G 20 1_555 C G 5 1_555 D C 19 1_555 0.346 -1.832 3.389 -0.403 12.713 25.646 -6.337 -0.785 2.242 26.652 0.845 28.580 18 CC_C4G5:C19G20_DD C 4 ? D 20 ? C 5 ? D 19 ? 1 C G 5 1_555 D C 19 1_555 C U 6 1_555 D U 18 1_555 0.062 -1.164 3.518 -1.908 0.852 49.228 -1.465 -0.227 3.494 1.022 2.289 49.270 19 CC_G5U6:U18C19_DD C 5 ? D 19 ? C 6 ? D 18 ? 1 C U 6 1_555 D U 18 1_555 C C 7 1_555 D G 17 1_555 -0.049 -2.074 2.972 7.911 4.688 28.216 -4.900 1.527 2.498 9.308 -15.709 29.648 20 CC_U6C7:G17U18_DD C 6 ? D 18 ? C 7 ? D 17 ? 1 C C 7 1_555 D G 17 1_555 C A 8 1_555 D A 16 1_555 -1.279 -1.793 3.407 6.622 9.114 34.305 -4.112 2.949 2.579 14.960 -10.869 36.054 21 CC_C7A8:A16G17_DD C 7 ? D 17 ? C 8 ? D 16 ? 1 C A 8 1_555 D A 16 1_555 C C 9 1_555 D C 14 1_555 3.962 0.704 2.604 -13.963 21.482 22.135 -0.840 -8.161 0.546 41.779 27.155 33.737 22 CC_A8C9:C14A16_DD C 8 ? D 16 ? C 9 ? D 14 ? 1 C C 9 1_555 D C 14 1_555 C C 10 1_555 D G 13 1_555 -0.156 -0.414 3.554 0.755 7.086 52.532 -0.956 0.227 3.473 7.965 -0.848 52.979 23 CC_C9C10:G13C14_DD C 9 ? D 14 ? C 10 ? D 13 ? 1 C C 10 1_555 D G 13 1_555 C 5BU 11 1_555 D A 12 1_555 -0.597 -2.003 3.397 -2.415 6.246 27.583 -5.498 0.673 2.922 12.862 4.972 28.369 24 CC_C105BU11:A12G13_DD C 10 ? D 13 ? C 11 ? D 12 ? 1 C 5BU 11 1_555 D A 12 1_555 C C 12 1_555 D G 11 1_555 -0.077 -1.320 3.275 -0.980 4.567 34.541 -2.881 -0.016 3.081 7.647 1.640 34.846 25 CC_5BU11C12:G11A12_DD C 11 ? D 12 ? C 12 ? D 11 ? 1 C C 12 1_555 D G 11 1_555 C G 13 1_555 D C 10 1_555 0.323 -1.870 3.321 -1.895 9.243 30.896 -4.895 -0.895 2.642 16.863 3.457 32.271 26 CC_C12G13:C10G11_DD C 12 ? D 11 ? C 13 ? D 10 ? 1 C G 13 1_555 D C 10 1_555 C A 14 1_555 D 5BU 9 1_555 0.248 -1.881 3.295 1.362 3.052 31.213 -4.040 -0.207 3.110 5.653 -2.522 31.387 27 CC_G13A14:5BU9C10_DD C 13 ? D 10 ? C 14 ? D 9 ? 1 C A 14 1_555 D 5BU 9 1_555 C G 15 1_555 D C 8 1_555 0.447 -2.183 3.461 5.920 6.233 32.251 -4.849 0.215 3.030 10.980 -10.428 33.348 28 CC_A14G15:C85BU9_DD C 14 ? D 9 ? C 15 ? D 8 ? 1 C G 19 1_555 D C 5 1_555 C U 20 1_555 D U 4 1_555 0.140 -0.921 3.464 0.025 6.166 50.842 -1.510 -0.161 3.339 7.152 -0.030 51.190 29 CC_G19U20:U4C5_DD C 19 ? D 5 ? C 20 ? D 4 ? 1 C U 20 1_555 D U 4 1_555 C C 21 1_555 D G 3 1_555 0.103 -1.777 2.899 6.244 4.988 24.145 -5.241 1.272 2.438 11.528 -14.430 25.414 30 CC_U20C21:G3U4_DD C 20 ? D 4 ? C 21 ? D 3 ? 1 C C 21 1_555 D G 3 1_555 C G 22 1_555 D C 2 1_555 0.184 -1.936 3.301 1.166 8.739 26.575 -5.909 -0.127 2.552 18.379 -2.452 27.975 31 CC_C21G22:C2G3_DD C 21 ? D 3 ? C 22 ? D 2 ? 1 C G 22 1_555 D C 2 1_555 C C 23 1_555 D G 1 1_555 -0.019 -2.255 3.234 2.781 -0.329 36.537 -3.542 0.409 3.243 -0.524 -4.427 36.640 32 CC_G22C23:G1C2_DD C 22 ? D 2 ? C 23 ? D 1 ? # _atom_sites.entry_id 3BNR _atom_sites.fract_transf_matrix[1][1] 0.014047 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006586 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012923 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019610 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C K N O P # loop_