data_3BNT # _entry.id 3BNT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BNT pdb_00003bnt 10.2210/pdb3bnt/pdb NDB AR0092 ? ? RCSB RCSB045745 ? ? WWPDB D_1000045745 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-09-27 4 'Structure model' 2 0 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_diffrn_reflns_shell 2 4 'Structure model' atom_site 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_diffrn_reflns_shell.percent_possible_obs' 2 4 'Structure model' '_atom_site.occupancy' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.conn_type_id' 6 4 'Structure model' '_struct_conn.id' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 4 'Structure model' '_struct_conn_type.id' 21 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3BNT _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BNL . unspecified PDB 3BNN . unspecified PDB 3BNO . unspecified PDB 3BNP . unspecified PDB 3BNQ . unspecified PDB 3BNR . unspecified PDB 3BNS . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Westhof, E.' 2 # _citation.id primary _citation.title 'The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 36 _citation.page_first 2654 _citation.page_last 2666 _citation.year 2008 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18346970 _citation.pdbx_database_id_DOI 10.1093/nar/gkn112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Westhof, E.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'A site of human mitochondrial ribosome' 7087.131 1 ? A1555G ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGCGUCACC(5BU)CGAGCAAGUCGC' _entity_poly.pdbx_seq_one_letter_code_can CGCGUCACCUCGAGCAAGUCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'COBALT HEXAMMINE(III)' NCO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 C n 1 9 C n 1 10 5BU n 1 11 C n 1 12 G n 1 13 A n 1 14 G n 1 15 C n 1 16 A n 1 17 A n 1 18 G n 1 19 U n 1 20 C n 1 21 G n 1 22 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 5BU 10 10 10 5BU 5BU A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 23 1 NA NA A . C 3 NCO 1 24 1 NCO NCO A . D 4 HOH 1 25 1 HOH HOH A . D 4 HOH 2 26 2 HOH HOH A . D 4 HOH 3 27 3 HOH HOH A . D 4 HOH 4 28 4 HOH HOH A . D 4 HOH 5 29 5 HOH HOH A . D 4 HOH 6 30 6 HOH HOH A . D 4 HOH 7 31 7 HOH HOH A . D 4 HOH 8 32 8 HOH HOH A . D 4 HOH 9 33 9 HOH HOH A . D 4 HOH 10 34 10 HOH HOH A . D 4 HOH 11 35 11 HOH HOH A . D 4 HOH 12 36 12 HOH HOH A . D 4 HOH 13 37 13 HOH HOH A . D 4 HOH 14 38 14 HOH HOH A . D 4 HOH 15 39 15 HOH HOH A . D 4 HOH 16 40 16 HOH HOH A . D 4 HOH 17 41 17 HOH HOH A . D 4 HOH 18 42 18 HOH HOH A . D 4 HOH 19 43 19 HOH HOH A . D 4 HOH 20 44 20 HOH HOH A . D 4 HOH 21 45 21 HOH HOH A . D 4 HOH 22 46 22 HOH HOH A . D 4 HOH 23 47 23 HOH HOH A . D 4 HOH 24 48 24 HOH HOH A . D 4 HOH 25 49 25 HOH HOH A . D 4 HOH 26 50 26 HOH HOH A . D 4 HOH 27 51 27 HOH HOH A . D 4 HOH 28 52 28 HOH HOH A . D 4 HOH 29 53 29 HOH HOH A . D 4 HOH 30 54 30 HOH HOH A . D 4 HOH 31 55 31 HOH HOH A . D 4 HOH 32 56 32 HOH HOH A . D 4 HOH 33 57 33 HOH HOH A . D 4 HOH 34 58 34 HOH HOH A . D 4 HOH 35 59 35 HOH HOH A . D 4 HOH 36 60 36 HOH HOH A . D 4 HOH 37 61 37 HOH HOH A . D 4 HOH 38 62 38 HOH HOH A . D 4 HOH 39 63 39 HOH HOH A . D 4 HOH 40 64 40 HOH HOH A . D 4 HOH 41 65 41 HOH HOH A . D 4 HOH 42 66 42 HOH HOH A . D 4 HOH 43 67 43 HOH HOH A . D 4 HOH 44 68 44 HOH HOH A . D 4 HOH 45 69 45 HOH HOH A . D 4 HOH 46 70 46 HOH HOH A . D 4 HOH 47 71 47 HOH HOH A . D 4 HOH 48 72 48 HOH HOH A . D 4 HOH 49 73 49 HOH HOH A . D 4 HOH 50 74 50 HOH HOH A . D 4 HOH 51 75 51 HOH HOH A . D 4 HOH 52 76 52 HOH HOH A . D 4 HOH 53 77 53 HOH HOH A . D 4 HOH 54 78 54 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data processing' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 SOLVE 2.12 14-Oct-2006 package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 # _cell.length_a 74.865 _cell.length_b 74.865 _cell.length_c 22.537 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3BNT _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 64' _symmetry.entry_id 3BNT _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 172 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3BNT _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;Sodium cacodylate, KCl, spermine tetrachloride, paromomycin, 2-methyl-2,4-pentanediol, hexammine cobalt chloride, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 KCl ? ? ? 1 3 1 'Sodium cacodylate' ? ? ? 1 4 1 '[Co(NH3)6]Cl3' ? ? ? 1 5 2 MPD ? ? ? 1 6 2 KCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91950 1.0 2 0.91984 1.0 3 0.91637 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_wavelength_list '0.91950, 0.91984, 0.91637' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A # _reflns.entry_id 3BNT _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 37.432 _reflns.number_obs 3374 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 5.900 _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_redundancy 9.900 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_Rrim_I_all 2.30 2.42 ? 4921 ? 0.263 2.4 0.263 ? 10.50 ? 470 100.00 ? 1 ? ? ? 2.42 2.57 ? 4794 ? 0.181 3.5 0.181 ? 10.40 ? 463 100.00 ? 2 ? ? ? 2.57 2.75 ? 4393 ? 0.116 4.8 0.116 ? 10.20 ? 431 100.00 ? 3 ? ? ? 2.75 2.97 ? 4033 ? 0.085 6.5 0.085 ? 10.00 ? 404 100.00 ? 4 ? ? ? 2.97 3.25 ? 3789 ? 0.070 6.0 0.070 ? 9.90 ? 382 100.00 ? 5 ? ? ? 3.25 3.64 ? 3269 ? 0.065 7.8 0.065 ? 9.90 ? 331 100.00 ? 6 ? ? ? 3.64 4.20 ? 2931 ? 0.072 7.7 0.072 ? 9.70 ? 302 100.00 ? 7 ? ? ? 4.20 5.14 ? 2442 ? 0.059 8.5 0.059 ? 9.40 ? 261 100.00 ? 8 ? ? ? 5.14 7.27 ? 1897 ? 0.047 9.6 0.047 ? 9.00 ? 210 100.00 ? 9 ? ? ? 7.27 37.43 ? 996 ? 0.052 9.3 0.052 ? 8.30 ? 120 97.20 ? 10 ? ? ? # _refine.entry_id 3BNT _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 37.432 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.900 _refine.ls_number_reflns_obs 3368 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.255 _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 335 _refine.B_iso_mean 34.779 _refine.solvent_model_param_bsol 43.732 _refine.aniso_B[1][1] -0.608 _refine.aniso_B[2][2] -0.608 _refine.aniso_B[3][3] 1.215 _refine.aniso_B[1][2] -1.671 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct MAD _refine.overall_FOM_work_R_set 0.768 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 464 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 526 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 37.432 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.004 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 0.8 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:dna-rna.top 'X-RAY DIFFRACTION' 2 bru.param bru.top 'X-RAY DIFFRACTION' 3 nco_xplor.param nco_xplor.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' # _struct.entry_id 3BNT _struct.title ;Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]Cl3 (A1555G mutant, Br-derivative) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BNT _struct_keywords.text 'ribosome, decoding site, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3BNT _struct_ref.pdbx_db_accession 3BNT _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BNT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3BNT _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4330 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 37.4325000000 0.0000000000 -1.0000000000 0.0000000000 64.8349918543 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 9 "O3'" ? ? ? 1_555 A 5BU 10 P ? ? A C 9 A 5BU 10 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A 5BU 10 "O3'" ? ? ? 1_555 A C 11 P ? ? A 5BU 10 A C 11 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A C 22 "O3'" ? ? ? 1_555 B NA . NA ? ? A C 22 A NA 23 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc2 metalc ? ? A C 22 "O2'" ? ? ? 1_555 B NA . NA ? ? A C 22 A NA 23 1_555 ? ? ? ? ? ? ? 2.883 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 2 A C 22 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 2 A C 22 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 2 A C 22 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 3 A G 21 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 3 A G 21 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 3 A G 21 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A U 19 O4 ? ? A U 5 A U 19 4_665 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A U 5 O2 ? ? ? 1_555 A U 19 N3 ? ? A U 5 A U 19 4_665 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 6 A G 18 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 6 A G 18 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 6 A G 18 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A A 17 N6 ? ? A A 7 A A 17 4_665 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 A C 15 O2 ? ? A C 8 A C 15 4_665 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog17 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 14 N1 ? ? A C 9 A G 14 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 14 O6 ? ? A C 9 A G 14 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 14 N2 ? ? A C 9 A G 14 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A 5BU 10 N3 ? ? ? 1_555 A A 13 N1 ? ? A 5BU 10 A A 13 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A 5BU 10 O4 ? ? ? 1_555 A A 13 N6 ? ? A 5BU 10 A A 13 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 12 N1 ? ? A C 11 A G 12 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 12 O6 ? ? A C 11 A G 12 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 12 N2 ? ? A C 11 A G 12 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 12 A C 11 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 12 A C 11 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 12 A C 11 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 13 N1 ? ? ? 1_555 A 5BU 10 N3 ? ? A A 13 A 5BU 10 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 13 N6 ? ? ? 1_555 A 5BU 10 O4 ? ? A A 13 A 5BU 10 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 9 N3 ? ? A G 14 A C 9 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 9 O2 ? ? A G 14 A C 9 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 9 N4 ? ? A G 14 A C 9 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 O2 ? ? ? 1_555 A C 8 N4 ? ? A C 15 A C 8 4_665 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog34 hydrog ? ? A A 17 N6 ? ? ? 1_555 A A 7 N1 ? ? A A 17 A A 7 4_665 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 6 N3 ? ? A G 18 A C 6 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 6 O2 ? ? A G 18 A C 6 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 6 N4 ? ? A G 18 A C 6 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 5 O2 ? ? A U 19 A U 5 4_665 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog39 hydrog ? ? A U 19 O4 ? ? ? 1_555 A U 5 N3 ? ? A U 19 A U 5 4_665 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog40 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 4 N1 ? ? A C 20 A G 4 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 4 O6 ? ? A C 20 A G 4 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 4 N2 ? ? A C 20 A G 4 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 3 N3 ? ? A G 21 A C 3 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 3 O2 ? ? A G 21 A C 3 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 3 N4 ? ? A G 21 A C 3 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 2 N1 ? ? A C 22 A G 2 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 2 O6 ? ? A C 22 A G 2 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 2 N2 ? ? A C 22 A G 2 4_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id "O3'" _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id C _pdbx_struct_conn_angle.ptnr1_label_seq_id 22 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id C _pdbx_struct_conn_angle.ptnr1_auth_seq_id 22 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 23 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id "O2'" _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id C _pdbx_struct_conn_angle.ptnr3_label_seq_id 22 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id C _pdbx_struct_conn_angle.ptnr3_auth_seq_id 22 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 60.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 23 ? 1 'BINDING SITE FOR RESIDUE NA A 23' AC2 Software A NCO 24 ? 2 'BINDING SITE FOR RESIDUE NCO A 24' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 HOH D . ? HOH A 76 . ? 3_664 ? 2 AC2 2 HOH D . ? HOH A 69 . ? 1_555 ? 3 AC2 2 HOH D . ? HOH A 71 . ? 1_555 ? # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5BU _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 5BU _pdbx_struct_mod_residue.auth_seq_id 10 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 78 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.301 _diffrn_reflns.pdbx_d_res_low 37.406 _diffrn_reflns.pdbx_number_obs 3368 _diffrn_reflns.pdbx_Rmerge_I_obs 0.084 _diffrn_reflns.pdbx_Rsym_value 0.084 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 5.10 _diffrn_reflns.pdbx_redundancy 9.90 _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 33495 # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 7.27 37.41 ? ? 0.070 0.070 ? 8.30 99.40 1 5.14 7.27 ? ? 0.056 0.056 ? 9.00 99.90 1 4.20 5.14 ? ? 0.065 0.065 ? 9.30 100.00 1 3.64 4.20 ? ? 0.079 0.079 ? 9.70 100.00 1 3.25 3.64 ? ? 0.076 0.076 ? 9.90 100.00 1 2.97 3.25 ? ? 0.081 0.081 ? 9.90 100.00 1 2.75 2.97 ? ? 0.095 0.095 ? 10.10 100.00 1 2.57 2.75 ? ? 0.146 0.146 ? 10.30 100.00 1 2.42 2.57 ? ? 0.233 0.233 ? 10.50 100.00 1 2.30 2.42 ? ? 0.304 0.304 ? 10.50 100.00 # _phasing.method MAD # _phasing_MAD_clust.id 1 _phasing_MAD_clust.expt_id '3 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id '3 wavelength' _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.clust_id _phasing_MAD_set.expt_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '3 wavelength' 1 0.9164 -5.25 3.80 1 '3 wavelength' 2 0.9195 -6.68 4.01 1 '3 wavelength' 3 0.9199 -7.51 3.85 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 NA NA NA N N 148 NCO CO CO N N 149 NCO N1 N N N 150 NCO N2 N N N 151 NCO N3 N N N 152 NCO N4 N N N 153 NCO N5 N N N 154 NCO N6 N N N 155 NCO HN11 H N N 156 NCO HN12 H N N 157 NCO HN13 H N N 158 NCO HN21 H N N 159 NCO HN22 H N N 160 NCO HN23 H N N 161 NCO HN31 H N N 162 NCO HN32 H N N 163 NCO HN33 H N N 164 NCO HN41 H N N 165 NCO HN42 H N N 166 NCO HN43 H N N 167 NCO HN51 H N N 168 NCO HN52 H N N 169 NCO HN53 H N N 170 NCO HN61 H N N 171 NCO HN62 H N N 172 NCO HN63 H N N 173 U OP3 O N N 174 U P P N N 175 U OP1 O N N 176 U OP2 O N N 177 U "O5'" O N N 178 U "C5'" C N N 179 U "C4'" C N R 180 U "O4'" O N N 181 U "C3'" C N S 182 U "O3'" O N N 183 U "C2'" C N R 184 U "O2'" O N N 185 U "C1'" C N R 186 U N1 N N N 187 U C2 C N N 188 U O2 O N N 189 U N3 N N N 190 U C4 C N N 191 U O4 O N N 192 U C5 C N N 193 U C6 C N N 194 U HOP3 H N N 195 U HOP2 H N N 196 U "H5'" H N N 197 U "H5''" H N N 198 U "H4'" H N N 199 U "H3'" H N N 200 U "HO3'" H N N 201 U "H2'" H N N 202 U "HO2'" H N N 203 U "H1'" H N N 204 U H3 H N N 205 U H5 H N N 206 U H6 H N N 207 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 NCO CO N1 sing N N 153 NCO CO N2 sing N N 154 NCO CO N3 sing N N 155 NCO CO N4 sing N N 156 NCO CO N5 sing N N 157 NCO CO N6 sing N N 158 NCO N1 HN11 sing N N 159 NCO N1 HN12 sing N N 160 NCO N1 HN13 sing N N 161 NCO N2 HN21 sing N N 162 NCO N2 HN22 sing N N 163 NCO N2 HN23 sing N N 164 NCO N3 HN31 sing N N 165 NCO N3 HN32 sing N N 166 NCO N3 HN33 sing N N 167 NCO N4 HN41 sing N N 168 NCO N4 HN42 sing N N 169 NCO N4 HN43 sing N N 170 NCO N5 HN51 sing N N 171 NCO N5 HN52 sing N N 172 NCO N5 HN53 sing N N 173 NCO N6 HN61 sing N N 174 NCO N6 HN62 sing N N 175 NCO N6 HN63 sing N N 176 U OP3 P sing N N 177 U OP3 HOP3 sing N N 178 U P OP1 doub N N 179 U P OP2 sing N N 180 U P "O5'" sing N N 181 U OP2 HOP2 sing N N 182 U "O5'" "C5'" sing N N 183 U "C5'" "C4'" sing N N 184 U "C5'" "H5'" sing N N 185 U "C5'" "H5''" sing N N 186 U "C4'" "O4'" sing N N 187 U "C4'" "C3'" sing N N 188 U "C4'" "H4'" sing N N 189 U "O4'" "C1'" sing N N 190 U "C3'" "O3'" sing N N 191 U "C3'" "C2'" sing N N 192 U "C3'" "H3'" sing N N 193 U "O3'" "HO3'" sing N N 194 U "C2'" "O2'" sing N N 195 U "C2'" "C1'" sing N N 196 U "C2'" "H2'" sing N N 197 U "O2'" "HO2'" sing N N 198 U "C1'" N1 sing N N 199 U "C1'" "H1'" sing N N 200 U N1 C2 sing N N 201 U N1 C6 sing N N 202 U C2 O2 doub N N 203 U C2 N3 sing N N 204 U N3 C4 sing N N 205 U N3 H3 sing N N 206 U C4 O4 doub N N 207 U C4 C5 sing N N 208 U C5 C6 doub N N 209 U C5 H5 sing N N 210 U C6 H6 sing N N 211 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BNT 'double helix' 3BNT 'a-form double helix' 3BNT 'bulge loop' 3BNT 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 22 4_665 -0.111 -0.187 0.435 -3.418 -6.945 2.942 1 A_G2:C22_A A 2 ? A 22 ? 19 1 1 A C 3 1_555 A G 21 4_665 0.228 -0.318 0.413 2.866 -10.834 0.860 2 A_C3:G21_A A 3 ? A 21 ? 19 1 1 A G 4 1_555 A C 20 4_665 -0.313 0.055 0.072 -1.390 -15.626 5.804 3 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A U 5 1_555 A U 19 4_665 2.480 -1.830 0.047 -12.401 -18.824 6.922 4 A_U5:U19_A A 5 ? A 19 ? 16 1 1 A C 6 1_555 A G 18 4_665 0.115 -0.297 0.247 -15.357 -11.402 0.065 5 A_C6:G18_A A 6 ? A 18 ? 19 1 1 A A 7 1_555 A A 17 4_665 2.561 1.391 0.013 -23.552 5.043 -20.207 6 A_A7:A17_A A 7 ? A 17 ? ? ? 1 A C 8 1_555 A C 15 4_665 -4.594 -1.924 0.541 5.357 -10.423 4.999 7 A_C8:C15_A A 8 ? A 15 ? ? 1 1 A C 9 1_555 A G 14 4_665 0.333 -0.199 0.233 3.335 -10.718 3.107 8 A_C9:G14_A A 9 ? A 14 ? 19 1 1 A 5BU 10 1_555 A A 13 4_665 -0.483 -0.279 0.110 1.247 -12.218 2.040 9 A_5BU10:A13_A A 10 ? A 13 ? 20 1 1 A C 11 1_555 A G 12 4_665 0.093 -0.185 -0.343 8.410 -20.272 5.270 10 A_C11:G12_A A 11 ? A 12 ? 19 1 1 A G 12 1_555 A C 11 4_665 -0.093 -0.185 -0.343 -8.410 -20.272 5.270 11 A_G12:C11_A A 12 ? A 11 ? 19 1 1 A A 13 1_555 A 5BU 10 4_665 0.483 -0.279 0.110 -1.247 -12.218 2.040 12 A_A13:5BU10_A A 13 ? A 10 ? 20 1 1 A G 14 1_555 A C 9 4_665 -0.333 -0.199 0.233 -3.335 -10.718 3.107 13 A_G14:C9_A A 14 ? A 9 ? 19 1 1 A C 15 1_555 A C 8 4_665 4.594 -1.924 0.541 -5.357 -10.423 4.999 14 A_C15:C8_A A 15 ? A 8 ? ? 1 1 A A 17 1_555 A A 7 4_665 -2.561 1.391 0.013 23.552 5.043 -20.207 15 A_A17:A7_A A 17 ? A 7 ? ? ? 1 A G 18 1_555 A C 6 4_665 -0.115 -0.297 0.247 15.357 -11.402 0.065 16 A_G18:C6_A A 18 ? A 6 ? 19 1 1 A U 19 1_555 A U 5 4_665 -2.480 -1.830 0.047 12.401 -18.824 6.922 17 A_U19:U5_A A 19 ? A 5 ? 16 1 1 A C 20 1_555 A G 4 4_665 0.313 0.055 0.072 1.390 -15.626 5.804 18 A_C20:G4_A A 20 ? A 4 ? 19 1 1 A G 21 1_555 A C 3 4_665 -0.228 -0.318 0.413 -2.866 -10.834 0.860 19 A_G21:C3_A A 21 ? A 3 ? 19 1 1 A C 22 1_555 A G 2 4_665 0.111 -0.187 0.435 3.418 -6.945 2.942 20 A_C22:G2_A A 22 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 22 4_665 A C 3 1_555 A G 21 4_665 -0.256 -1.582 3.040 0.169 2.350 32.631 -3.179 0.481 2.921 4.175 -0.300 32.714 1 AA_G2C3:G21C22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A C 3 1_555 A G 21 4_665 A G 4 1_555 A C 20 4_665 0.608 -1.917 3.120 2.117 10.433 24.690 -6.403 -0.848 2.186 23.075 -4.682 26.855 2 AA_C3G4:C20G21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 4_665 A U 5 1_555 A U 19 4_665 -0.089 -0.944 3.572 1.678 3.707 50.335 -1.392 0.233 3.494 4.350 -1.970 50.488 3 AA_G4U5:U19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A U 5 1_555 A U 19 4_665 A C 6 1_555 A G 18 4_665 0.050 -1.885 2.830 6.118 10.613 30.140 -4.810 0.740 2.039 19.431 -11.201 32.481 4 AA_U5C6:G18U19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A C 6 1_555 A G 18 4_665 A A 7 1_555 A A 17 4_665 -1.119 -1.573 3.270 7.771 8.188 39.508 -3.068 2.379 2.649 11.823 -11.220 41.028 5 AA_C6A7:A17G18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A A 7 1_555 A A 17 4_665 A C 8 1_555 A C 15 4_665 4.555 0.005 3.310 -19.505 23.565 20.902 -1.786 -8.680 -0.481 43.482 35.990 36.908 6 AA_A7C8:C15A17_AA A 7 ? A 17 ? A 8 ? A 15 ? 1 A C 8 1_555 A C 15 4_665 A C 9 1_555 A G 14 4_665 0.196 -0.588 3.370 0.126 7.384 54.840 -1.076 -0.204 3.273 7.977 -0.136 55.297 7 AA_C8C9:G14C15_AA A 8 ? A 15 ? A 9 ? A 14 ? 1 A C 9 1_555 A G 14 4_665 A 5BU 10 1_555 A A 13 4_665 -1.018 -1.995 3.179 -2.305 6.716 24.782 -6.181 1.699 2.638 15.254 5.234 25.764 8 AA_C95BU10:A13G14_AA A 9 ? A 14 ? A 10 ? A 13 ? 1 A 5BU 10 1_555 A A 13 4_665 A C 11 1_555 A G 12 4_665 -0.122 -1.087 3.005 1.420 2.271 33.488 -2.218 0.422 2.920 3.933 -2.460 33.592 9 AA_5BU10C11:G12A13_AA A 10 ? A 13 ? A 11 ? A 12 ? 1 A C 11 1_555 A G 12 4_665 A G 12 1_555 A C 11 4_665 0.000 -1.387 3.644 0.000 13.708 35.195 -3.996 0.000 2.922 21.682 0.000 37.692 10 AA_C11G12:C11G12_AA A 11 ? A 12 ? A 12 ? A 11 ? 1 A G 12 1_555 A C 11 4_665 A A 13 1_555 A 5BU 10 4_665 0.122 -1.087 3.005 -1.420 2.271 33.488 -2.218 -0.422 2.920 3.933 2.460 33.592 11 AA_G12A13:5BU10C11_AA A 12 ? A 11 ? A 13 ? A 10 ? 1 A A 13 1_555 A 5BU 10 4_665 A G 14 1_555 A C 9 4_665 1.018 -1.995 3.179 2.305 6.716 24.782 -6.181 -1.699 2.638 15.254 -5.234 25.764 12 AA_A13G14:C95BU10_AA A 13 ? A 10 ? A 14 ? A 9 ? 1 A G 14 1_555 A C 9 4_665 A C 15 1_555 A C 8 4_665 -0.196 -0.588 3.370 -0.126 7.384 54.840 -1.076 0.204 3.273 7.977 0.136 55.297 13 AA_G14C15:C8C9_AA A 14 ? A 9 ? A 15 ? A 8 ? 1 A C 15 1_555 A C 8 4_665 A A 17 1_555 A A 7 4_665 -4.555 0.005 3.310 19.505 23.565 20.902 -1.786 8.680 -0.481 43.482 -35.990 36.908 14 AA_C15A17:A7C8_AA A 15 ? A 8 ? A 17 ? A 7 ? 1 A A 17 1_555 A A 7 4_665 A G 18 1_555 A C 6 4_665 1.119 -1.573 3.270 -7.771 8.188 39.508 -3.068 -2.379 2.649 11.823 11.220 41.028 15 AA_A17G18:C6A7_AA A 17 ? A 7 ? A 18 ? A 6 ? 1 A G 18 1_555 A C 6 4_665 A U 19 1_555 A U 5 4_665 -0.050 -1.885 2.830 -6.118 10.613 30.140 -4.810 -0.740 2.039 19.431 11.201 32.481 16 AA_G18U19:U5C6_AA A 18 ? A 6 ? A 19 ? A 5 ? 1 A U 19 1_555 A U 5 4_665 A C 20 1_555 A G 4 4_665 0.089 -0.944 3.572 -1.678 3.707 50.335 -1.392 -0.233 3.494 4.350 1.970 50.488 17 AA_U19C20:G4U5_AA A 19 ? A 5 ? A 20 ? A 4 ? 1 A C 20 1_555 A G 4 4_665 A G 21 1_555 A C 3 4_665 -0.608 -1.917 3.120 -2.117 10.433 24.690 -6.403 0.848 2.186 23.075 4.682 26.855 18 AA_C20G21:C3G4_AA A 20 ? A 4 ? A 21 ? A 3 ? 1 A G 21 1_555 A C 3 4_665 A C 22 1_555 A G 2 4_665 0.256 -1.582 3.040 -0.169 2.350 32.631 -3.179 -0.481 2.921 4.175 0.300 32.714 19 AA_G21C22:G2C3_AA A 21 ? A 3 ? A 22 ? A 2 ? # _atom_sites.entry_id 3BNT _atom_sites.fract_transf_matrix[1][1] 0.013357 _atom_sites.fract_transf_matrix[1][2] 0.007712 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015424 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.044371 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CO N NA O P # loop_