HEADER LYASE 14-DEC-07 3BNY TITLE CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH 2- TITLE 2 FLUOROFARNESYL DIPHOSPHATE (2F-FPP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.2.3.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS TERREUS; SOURCE 3 ORGANISM_TAXID: 33178; SOURCE 4 GENE: ARI1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11-RASA KEYWDS SESQUITERPENE CYCLASE, ISOPRENOID, FARNESYL DIPHOSPHATE, MAGNESIUM, KEYWDS 2 CYCLIZATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.SHISHOVA,D.W.CHRISTIANSON REVDAT 4 30-AUG-23 3BNY 1 REMARK LINK REVDAT 3 24-FEB-09 3BNY 1 VERSN REVDAT 2 10-JUN-08 3BNY 1 JRNL REVDAT 1 25-MAR-08 3BNY 0 JRNL AUTH E.Y.SHISHOVA,F.YU,D.J.MILLER,J.A.FARALDOS,Y.ZHAO,R.M.COATES, JRNL AUTH 2 R.K.ALLEMANN,D.E.CANE,D.W.CHRISTIANSON JRNL TITL X-RAY CRYSTALLOGRAPHIC STUDIES OF SUBSTRATE BINDING TO JRNL TITL 2 ARISTOLOCHENE SYNTHASE SUGGEST A METAL ION BINDING SEQUENCE JRNL TITL 3 FOR CATALYSIS JRNL REF J.BIOL.CHEM. V. 283 15431 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18385128 JRNL DOI 10.1074/JBC.M800659200 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 104343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5264 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 523 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.86000 REMARK 3 B22 (A**2) : 2.28000 REMARK 3 B33 (A**2) : -5.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 61.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.100 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE REMARK 4 REMARK 4 3BNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE SILICON CRYSTAL REMARK 200 MONOCHROMATOR. REMARK 200 OPTICS : PLATINUM-COATED 1:1 FOCUSING REMARK 200 TOROIDAL MIRROR. DOUBLE SILICON REMARK 200 CRYSTAL MONOCHROMATOR. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 61.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2E4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 6000, 100 MM TRIS (PH 8.5), REMARK 280 0.5 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.93100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 THR A 230 REMARK 465 SER A 231 REMARK 465 LYS A 232 REMARK 465 THR A 233 REMARK 465 ALA A 234 REMARK 465 HIS A 235 REMARK 465 SER A 236 REMARK 465 GLU A 237 REMARK 465 GLY A 238 REMARK 465 GLY A 239 REMARK 465 ILE A 240 REMARK 465 VAL A 318 REMARK 465 VAL A 319 REMARK 465 ASP A 320 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 SER B 231 REMARK 465 LYS B 232 REMARK 465 THR B 233 REMARK 465 ALA B 234 REMARK 465 HIS B 235 REMARK 465 SER B 236 REMARK 465 GLU B 237 REMARK 465 GLY B 238 REMARK 465 GLY B 239 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 ASP B 320 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 PRO C 4 REMARK 465 ASN C 5 REMARK 465 GLY C 6 REMARK 465 THR C 7 REMARK 465 ASN C 8 REMARK 465 GLY C 9 REMARK 465 ALA C 10 REMARK 465 SER C 11 REMARK 465 SER C 12 REMARK 465 SER C 231 REMARK 465 LYS C 232 REMARK 465 THR C 233 REMARK 465 ALA C 234 REMARK 465 HIS C 235 REMARK 465 SER C 236 REMARK 465 GLU C 237 REMARK 465 GLY C 238 REMARK 465 GLY C 239 REMARK 465 ILE C 240 REMARK 465 LEU C 286 REMARK 465 GLU C 287 REMARK 465 VAL C 318 REMARK 465 VAL C 319 REMARK 465 ASP C 320 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 LYS D 3 REMARK 465 PRO D 4 REMARK 465 ASN D 5 REMARK 465 GLY D 6 REMARK 465 THR D 7 REMARK 465 ASN D 8 REMARK 465 GLY D 9 REMARK 465 ALA D 10 REMARK 465 SER D 11 REMARK 465 SER D 12 REMARK 465 THR D 233 REMARK 465 ALA D 234 REMARK 465 HIS D 235 REMARK 465 SER D 236 REMARK 465 GLU D 237 REMARK 465 GLY D 238 REMARK 465 GLY D 239 REMARK 465 ILE D 240 REMARK 465 VAL D 318 REMARK 465 VAL D 319 REMARK 465 ASP D 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 159 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 102.70 68.92 REMARK 500 ASP A 139 85.60 -162.83 REMARK 500 PRO B 47 -124.88 -65.36 REMARK 500 ASN B 48 174.83 -57.73 REMARK 500 ARG B 120 -11.54 -46.81 REMARK 500 ASP B 139 85.22 -155.52 REMARK 500 TYR B 229 91.48 -67.35 REMARK 500 LEU B 241 -46.53 -170.14 REMARK 500 CYS B 242 80.34 32.50 REMARK 500 TYR B 315 41.55 -100.36 REMARK 500 LEU C 14 104.48 64.85 REMARK 500 ARG C 120 -6.13 -54.12 REMARK 500 THR C 158 27.05 -142.80 REMARK 500 TYR C 229 -22.40 176.41 REMARK 500 GLU C 284 -90.87 -114.69 REMARK 500 PRO D 47 -82.16 -56.43 REMARK 500 SER D 97 -131.12 -56.41 REMARK 500 PHE D 98 -38.43 -130.88 REMARK 500 ARG D 120 -8.01 -52.65 REMARK 500 ASP D 139 92.36 -160.22 REMARK 500 ASP D 159 -109.15 -72.77 REMARK 500 ARG D 160 93.81 92.82 REMARK 500 SER D 316 89.76 55.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 219 OD1 REMARK 620 2 SER D 223 OG 90.0 REMARK 620 3 GLU D 227 OE2 160.0 87.3 REMARK 620 4 FPF D 403 O2A 91.6 174.1 93.1 REMARK 620 5 FPF D 403 O2B 84.4 102.2 115.5 72.3 REMARK 620 6 HOH D1278 O 83.3 86.5 76.7 99.4 165.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME C 1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME D 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPF A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPF B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPF C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPF D 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E4O RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE FROM ASPERGILLUS REMARK 900 TERREUS REMARK 900 RELATED ID: 2OA6 RELATED DB: PDB REMARK 900 ARISTOLOCHENE SYNTHASE FROM ASPERGILLUS TERREUS COMPLEXED WITH REMARK 900 PYROPHOSPHATE AND 3 MG2+ IONS REMARK 900 RELATED ID: 3BNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH FARNESYL REMARK 900 DIPHOSPHATE DBREF 3BNY A 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 DBREF 3BNY B 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 DBREF 3BNY C 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 DBREF 3BNY D 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 SEQRES 1 A 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 A 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 A 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 A 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 A 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 A 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 A 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 A 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 A 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 A 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 A 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 A 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 A 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 A 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 A 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 A 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 A 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 A 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 A 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 A 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 A 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 A 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 A 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 A 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 A 320 LEU ARG TYR SER VAL VAL VAL ASP SEQRES 1 B 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 B 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 B 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 B 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 B 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 B 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 B 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 B 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 B 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 B 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 B 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 B 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 B 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 B 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 B 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 B 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 B 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 B 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 B 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 B 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 B 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 B 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 B 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 B 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 B 320 LEU ARG TYR SER VAL VAL VAL ASP SEQRES 1 C 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 C 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 C 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 C 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 C 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 C 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 C 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 C 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 C 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 C 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 C 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 C 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 C 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 C 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 C 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 C 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 C 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 C 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 C 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 C 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 C 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 C 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 C 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 C 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 C 320 LEU ARG TYR SER VAL VAL VAL ASP SEQRES 1 D 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 D 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 D 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 D 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 D 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 D 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 D 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 D 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 D 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 D 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 D 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 D 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 D 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 D 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 D 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 D 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 D 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 D 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 D 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 D 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 D 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 D 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 D 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 D 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 D 320 LEU ARG TYR SER VAL VAL VAL ASP HET FPF A 400 25 HET CL B 500 1 HET BME B1271 4 HET FPF B 401 25 HET BME C1270 4 HET FPF C 402 25 HET MG D 701 1 HET BME D1272 4 HET FPF D 403 25 HETNAM FPF (2Z,6E)-2-FLUORO-3,7,11-TRIMETHYLDODECA-2,6,10-TRIEN-1- HETNAM 2 FPF YL TRIHYDROGEN DIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM MG MAGNESIUM ION FORMUL 5 FPF 4(C15 H27 F O7 P2) FORMUL 6 CL CL 1- FORMUL 7 BME 3(C2 H6 O S) FORMUL 11 MG MG 2+ FORMUL 14 HOH *523(H2 O) HELIX 1 1 LEU A 28 TRP A 44 1 17 HELIX 2 2 ASN A 48 GLY A 59 1 12 HELIX 3 3 GLY A 59 PHE A 68 1 10 HELIX 4 4 ARG A 75 GLU A 94 1 20 HELIX 5 5 SER A 97 ARG A 113 1 17 HELIX 6 6 ILE A 122 ILE A 146 1 25 HELIX 7 7 ILE A 146 GLN A 157 1 12 HELIX 8 8 GLY A 167 ARG A 177 1 11 HELIX 9 9 ASP A 178 GLY A 193 1 16 HELIX 10 10 SER A 197 VAL A 204 1 8 HELIX 11 11 VAL A 204 LEU A 228 1 25 HELIX 12 12 THR A 243 ASP A 253 1 11 HELIX 13 13 THR A 255 GLU A 284 1 30 HELIX 14 14 THR A 288 THR A 312 1 25 HELIX 15 15 LEU A 313 SER A 316 5 4 HELIX 16 16 LEU B 28 TRP B 44 1 17 HELIX 17 17 ASN B 48 GLY B 59 1 12 HELIX 18 18 GLY B 59 PHE B 68 1 10 HELIX 19 19 ARG B 75 TYR B 95 1 21 HELIX 20 20 SER B 97 ARG B 113 1 17 HELIX 21 21 ILE B 122 ASP B 139 1 18 HELIX 22 22 ASP B 139 ILE B 146 1 8 HELIX 23 23 ILE B 146 GLN B 157 1 12 HELIX 24 24 GLY B 167 GLU B 176 1 10 HELIX 25 25 ASP B 178 MET B 192 1 15 HELIX 26 26 SER B 197 VAL B 204 1 8 HELIX 27 27 VAL B 204 LEU B 228 1 25 HELIX 28 28 THR B 243 ASP B 253 1 11 HELIX 29 29 THR B 255 GLU B 284 1 30 HELIX 30 30 THR B 288 THR B 312 1 25 HELIX 31 31 LEU B 313 SER B 316 5 4 HELIX 32 32 LEU C 28 TRP C 44 1 17 HELIX 33 33 ASN C 48 GLY C 59 1 12 HELIX 34 34 GLY C 59 PHE C 68 1 10 HELIX 35 35 ARG C 75 TYR C 95 1 21 HELIX 36 36 SER C 97 GLY C 114 1 18 HELIX 37 37 ILE C 122 ILE C 146 1 25 HELIX 38 38 ILE C 146 GLN C 157 1 12 HELIX 39 39 GLY C 167 ARG C 177 1 11 HELIX 40 40 ASP C 178 MET C 192 1 15 HELIX 41 41 PRO C 198 ARG C 203 1 6 HELIX 42 42 VAL C 204 LEU C 228 1 25 HELIX 43 43 THR C 243 ASP C 253 1 11 HELIX 44 44 THR C 255 ALA C 283 1 29 HELIX 45 45 THR C 288 THR C 312 1 25 HELIX 46 46 LEU C 313 SER C 316 5 4 HELIX 47 47 LEU D 28 TRP D 44 1 17 HELIX 48 48 ASN D 48 GLY D 59 1 12 HELIX 49 49 GLY D 59 PHE D 68 1 10 HELIX 50 50 ARG D 75 GLU D 94 1 20 HELIX 51 51 PHE D 98 ARG D 113 1 16 HELIX 52 52 ILE D 122 ASP D 139 1 18 HELIX 53 53 ASP D 139 ILE D 146 1 8 HELIX 54 54 ILE D 146 THR D 158 1 13 HELIX 55 55 GLY D 167 GLU D 176 1 10 HELIX 56 56 ASP D 178 GLY D 193 1 16 HELIX 57 57 SER D 197 ARG D 203 1 7 HELIX 58 58 VAL D 204 SER D 231 1 28 HELIX 59 59 THR D 243 ASP D 253 1 11 HELIX 60 60 THR D 255 GLU D 284 1 30 HELIX 61 61 THR D 288 THR D 312 1 25 HELIX 62 62 LEU D 313 SER D 316 5 4 LINK OD1 ASN D 219 MG MG D 701 1555 1555 2.28 LINK OG SER D 223 MG MG D 701 1555 1555 2.33 LINK OE2 GLU D 227 MG MG D 701 1555 1555 2.26 LINK O2A FPF D 403 MG MG D 701 1555 1555 1.95 LINK O2B FPF D 403 MG MG D 701 1555 1555 2.34 LINK MG MG D 701 O HOH D1278 1555 1555 2.43 SITE 1 AC1 4 ASN D 219 SER D 223 GLU D 227 HOH D1278 SITE 1 AC2 2 ARG B 314 HOH B1366 SITE 1 AC3 6 CYS C 25 ARG C 62 CYS C 65 LEU C 66 SITE 2 AC3 6 PRO D 27 HOH D1298 SITE 1 AC4 2 CYS B 25 ARG B 62 SITE 1 AC5 5 GLU C 30 HOH C1280 CYS D 25 ARG D 62 SITE 2 AC5 5 CYS D 65 SITE 1 AC6 7 TYR A 67 PHE A 153 LYS A 181 ASN A 219 SITE 2 AC6 7 ASN A 305 TRP A 308 TYR A 315 SITE 1 AC7 11 TYR B 67 PHE B 87 ASP B 90 PHE B 153 SITE 2 AC7 11 LYS B 181 LEU B 184 ASN B 219 TRP B 308 SITE 3 AC7 11 ARG B 314 TYR B 315 HOH B1281 SITE 1 AC8 10 TYR C 67 LEU C 86 PHE C 87 PHE C 153 SITE 2 AC8 10 LEU C 184 ASN C 219 TRP C 308 ARG C 314 SITE 3 AC8 10 TYR C 315 HOH C1386 SITE 1 AC9 13 TYR D 67 LEU D 86 PHE D 87 PHE D 153 SITE 2 AC9 13 LYS D 181 LEU D 184 ASN D 219 SER D 223 SITE 3 AC9 13 LYS D 226 GLU D 227 ARG D 314 TYR D 315 SITE 4 AC9 13 HOH D1287 CRYST1 61.654 147.862 83.954 90.00 97.84 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016220 0.000000 0.002233 0.00000 SCALE2 0.000000 0.006763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012024 0.00000