HEADER TRANSFERASE 15-DEC-07 3BNZ TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE TERNARY COMPLEX WITH DUMP TITLE 2 AND 8A INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; SOURCE 3 ORGANISM_TAXID: 1582; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THYMIDYLATE SYNTHASE, METHYLTRANSFERASE, NUCLEOTIDE BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.LEONE,L.CANCIAN,R.LUCIANI,S.FERRARI,M.P.COSTI,S.MANGANI REVDAT 3 01-NOV-23 3BNZ 1 REMARK REVDAT 2 24-JUL-13 3BNZ 1 JRNL VERSN REVDAT 1 16-DEC-08 3BNZ 0 JRNL AUTH S.MANGANI,L.CANCIAN,R.LEONE,C.POZZI,S.LAZZARI,R.LUCIANI, JRNL AUTH 2 S.FERRARI,M.P.COSTI JRNL TITL IDENTIFICATION OF THE BINDING MODES OF N-PHENYLPHTHALIMIDES JRNL TITL 2 INHIBITING BACTERIAL THYMIDYLATE SYNTHASE THROUGH X-RAY JRNL TITL 3 CRYSTALLOGRAPHY SCREENING JRNL REF J.MED.CHEM. V. 54 5454 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21696158 JRNL DOI 10.1021/JM2005018 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.833 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2711 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3690 ; 2.169 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 8.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;38.325 ;23.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;23.852 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2107 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1359 ; 0.288 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1748 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.312 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.323 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1570 ; 0.834 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2539 ; 1.549 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1141 ; 2.002 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1151 ; 3.080 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.468 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : 0.16900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM (NH4)H2PO4/(NH4)2HPO4, 5% V/V REMARK 280 PEG 400, 20MM TRIS-HCL BUFFER PH 7.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.02433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.04867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.53650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 177.56083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.51217 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.02433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 142.04867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 177.56083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.53650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.51217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -35.51217 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 99 REMARK 465 ASP A 103 REMARK 465 ALA A 315 REMARK 465 VAL A 316 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C16 A 318 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LCA RELATED DB: PDB REMARK 900 LACTOBACILLUS CASEI THYMIDYLATE SYNTHASE TERNARY COMPLEX WITH DUMP REMARK 900 AND CB3717 DBREF 3BNZ A 1 316 UNP P00469 TYSY_LACCA 1 316 SEQRES 1 A 316 MET LEU GLU GLN PRO TYR LEU ASP LEU ALA LYS LYS VAL SEQRES 2 A 316 LEU ASP GLU GLY HIS PHE LYS PRO ASP ARG THR HIS THR SEQRES 3 A 316 GLY THR TYR SER ILE PHE GLY HIS GLN MET ARG PHE ASP SEQRES 4 A 316 LEU SER LYS GLY PHE PRO LEU LEU THR THR LYS LYS VAL SEQRES 5 A 316 PRO PHE GLY LEU ILE LYS SER GLU LEU LEU TRP PHE LEU SEQRES 6 A 316 HIS GLY ASP THR ASN ILE ARG PHE LEU LEU GLN HIS ARG SEQRES 7 A 316 ASN HIS ILE TRP ASP GLU TRP ALA PHE GLU LYS TRP VAL SEQRES 8 A 316 LYS SER ASP GLU TYR HIS GLY PRO ASP MET THR ASP PHE SEQRES 9 A 316 GLY HIS ARG SER GLN LYS ASP PRO GLU PHE ALA ALA VAL SEQRES 10 A 316 TYR HIS GLU GLU MET ALA LYS PHE ASP ASP ARG VAL LEU SEQRES 11 A 316 HIS ASP ASP ALA PHE ALA ALA LYS TYR GLY ASP LEU GLY SEQRES 12 A 316 LEU VAL TYR GLY SER GLN TRP ARG ALA TRP HIS THR SER SEQRES 13 A 316 LYS GLY ASP THR ILE ASP GLN LEU GLY ASP VAL ILE GLU SEQRES 14 A 316 GLN ILE LYS THR HIS PRO TYR SER ARG ARG LEU ILE VAL SEQRES 15 A 316 SER ALA TRP ASN PRO GLU ASP VAL PRO THR MET ALA LEU SEQRES 16 A 316 PRO PRO CYS HIS THR LEU TYR GLN PHE TYR VAL ASN ASP SEQRES 17 A 316 GLY LYS LEU SER LEU GLN LEU TYR GLN ARG SER ALA ASP SEQRES 18 A 316 ILE PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 19 A 316 LEU LEU THR HIS LEU VAL ALA HIS GLU CYS GLY LEU GLU SEQRES 20 A 316 VAL GLY GLU PHE ILE HIS THR PHE GLY ASP ALA HIS LEU SEQRES 21 A 316 TYR VAL ASN HIS LEU ASP GLN ILE LYS GLU GLN LEU SER SEQRES 22 A 316 ARG THR PRO ARG PRO ALA PRO THR LEU GLN LEU ASN PRO SEQRES 23 A 316 ASP LYS HIS ASP ILE PHE ASP PHE ASP MET LYS ASP ILE SEQRES 24 A 316 LYS LEU LEU ASN TYR ASP PRO TYR PRO ALA ILE LYS ALA SEQRES 25 A 316 PRO VAL ALA VAL HET PO4 A 319 5 HET UMP A 317 20 HET C16 A 318 20 HETNAM PO4 PHOSPHATE ION HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM C16 4-(4-METHYL-1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL) HETNAM 2 C16 BENZONITRILE HETSYN UMP DUMP FORMUL 2 PO4 O4 P 3- FORMUL 3 UMP C9 H13 N2 O8 P FORMUL 4 C16 C16 H10 N2 O2 FORMUL 5 HOH *73(H2 O) HELIX 1 1 GLU A 3 GLY A 17 1 15 HELIX 2 2 SER A 41 GLY A 43 5 3 HELIX 3 3 PRO A 53 HIS A 66 1 14 HELIX 4 4 ASN A 70 GLN A 76 1 7 HELIX 5 5 TRP A 82 SER A 93 1 12 HELIX 6 6 ASP A 111 ASP A 132 1 22 HELIX 7 7 ASP A 132 GLY A 140 1 9 HELIX 8 8 VAL A 145 ALA A 152 1 8 HELIX 9 9 ASP A 162 HIS A 174 1 13 HELIX 10 10 ASP A 189 MET A 193 5 5 HELIX 11 11 LEU A 224 CYS A 244 1 21 HELIX 12 12 HIS A 264 LEU A 272 1 9 HELIX 13 13 ASP A 290 PHE A 294 5 5 HELIX 14 14 ASP A 295 LYS A 297 5 3 SHEET 1 A 6 HIS A 18 PRO A 21 0 SHEET 2 A 6 GLY A 27 ASP A 39 -1 O SER A 30 N HIS A 18 SHEET 3 A 6 GLU A 247 TYR A 261 -1 O HIS A 253 N MET A 36 SHEET 4 A 6 LYS A 210 ASP A 221 1 N GLN A 217 O THR A 254 SHEET 5 A 6 HIS A 199 ASN A 207 -1 N TYR A 205 O SER A 212 SHEET 6 A 6 ILE A 181 SER A 183 -1 N VAL A 182 O TYR A 202 SHEET 1 B 2 TRP A 153 HIS A 154 0 SHEET 2 B 2 THR A 160 ILE A 161 -1 O ILE A 161 N TRP A 153 SHEET 1 C 2 THR A 281 LEU A 284 0 SHEET 2 C 2 ILE A 299 LEU A 302 -1 O LYS A 300 N GLN A 283 SITE 1 AC1 4 HIS A 77 ASP A 295 MET A 296 LYS A 297 SITE 1 AC2 15 ARG A 23 ARG A 178 ARG A 179 CYS A 198 SITE 2 AC2 15 HIS A 199 GLN A 217 ARG A 218 SER A 219 SITE 3 AC2 15 ALA A 220 ASP A 221 GLY A 225 ASN A 229 SITE 4 AC2 15 HIS A 259 TYR A 261 C16 A 318 SITE 1 AC3 6 ILE A 81 GLU A 84 LEU A 224 PHE A 228 SITE 2 AC3 6 ASN A 229 UMP A 317 CRYST1 76.563 76.563 213.073 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013061 0.007541 0.000000 0.00000 SCALE2 0.000000 0.015082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004693 0.00000 TER 2566 VAL A 314 HETATM 2567 P PO4 A 319 -36.457 35.049 10.278 1.00 38.86 P HETATM 2568 O1 PO4 A 319 -36.833 35.053 8.789 1.00 43.27 O HETATM 2569 O2 PO4 A 319 -35.252 34.139 10.462 1.00 45.00 O HETATM 2570 O3 PO4 A 319 -37.606 34.340 10.997 1.00 46.46 O HETATM 2571 O4 PO4 A 319 -36.169 36.397 10.893 1.00 34.38 O HETATM 2572 N1 UMP A 317 -27.545 34.000 -14.005 1.00 42.74 N HETATM 2573 C2 UMP A 317 -26.977 32.985 -13.237 1.00 42.58 C HETATM 2574 N3 UMP A 317 -27.598 32.520 -12.110 1.00 43.93 N HETATM 2575 C4 UMP A 317 -28.802 33.068 -11.691 1.00 45.31 C HETATM 2576 C5 UMP A 317 -29.388 34.103 -12.452 1.00 45.14 C HETATM 2577 C6 UMP A 317 -28.732 34.563 -13.611 1.00 43.50 C HETATM 2578 O2 UMP A 317 -25.935 32.448 -13.526 1.00 43.05 O HETATM 2579 O4 UMP A 317 -29.336 32.628 -10.657 1.00 44.39 O HETATM 2580 C1' UMP A 317 -26.877 34.510 -15.207 1.00 41.83 C HETATM 2581 C2' UMP A 317 -26.713 33.493 -16.333 1.00 39.13 C HETATM 2582 C3' UMP A 317 -26.453 34.443 -17.488 1.00 38.03 C HETATM 2583 C4' UMP A 317 -27.028 35.786 -17.059 1.00 38.75 C HETATM 2584 O3' UMP A 317 -25.071 34.618 -17.697 1.00 35.04 O HETATM 2585 O4' UMP A 317 -27.603 35.581 -15.780 1.00 39.73 O HETATM 2586 C5' UMP A 317 -28.014 36.352 -18.081 1.00 40.93 C HETATM 2587 O5' UMP A 317 -29.224 35.620 -18.208 1.00 41.93 O HETATM 2588 P UMP A 317 -29.753 35.073 -19.648 1.00 42.59 P HETATM 2589 OP1 UMP A 317 -31.233 35.356 -19.759 1.00 39.43 O HETATM 2590 OP2 UMP A 317 -28.968 35.731 -20.754 1.00 40.50 O HETATM 2591 OP3 UMP A 317 -29.514 33.588 -19.757 1.00 41.68 O HETATM 2592 N41 C16 A 318 -25.228 44.136 -8.178 1.00 93.00 N HETATM 2593 C39 C16 A 318 -25.591 43.109 -8.396 1.00 93.00 C HETATM 2594 C32 C16 A 318 -26.030 41.905 -8.309 1.00 93.00 C HETATM 2595 C30 C16 A 318 -25.938 41.251 -7.087 1.00 93.00 C HETATM 2596 C28 C16 A 318 -26.385 39.934 -7.005 1.00 93.00 C HETATM 2597 C34 C16 A 318 -26.543 41.247 -9.431 1.00 93.00 C HETATM 2598 C36 C16 A 318 -26.987 39.929 -9.314 1.00 93.00 C HETATM 2599 C26 C16 A 318 -26.939 39.221 -8.093 1.00 93.00 C HETATM 2600 N19 C16 A 318 -27.343 37.930 -7.956 1.00 93.00 N HETATM 2601 C21 C16 A 318 -28.619 37.415 -7.970 1.00 93.00 C HETATM 2602 O23 C16 A 318 -29.759 38.009 -8.134 1.00 93.00 O HETATM 2603 C6 C16 A 318 -28.593 35.948 -7.777 1.00 93.00 C HETATM 2604 C4 C16 A 318 -29.568 34.958 -7.714 1.00 93.00 C HETATM 2605 C2 C16 A 318 -29.108 33.648 -7.512 1.00 93.00 C HETATM 2606 C15 C16 A 318 -26.442 36.942 -7.757 1.00 93.00 C HETATM 2607 O17 C16 A 318 -25.151 37.024 -7.677 1.00 93.00 O HETATM 2608 C8 C16 A 318 -27.143 35.653 -7.638 1.00 93.00 C HETATM 2609 C10 C16 A 318 -26.719 34.279 -7.429 1.00 93.00 C HETATM 2610 C13 C16 A 318 -25.237 34.050 -7.314 1.00 93.00 C HETATM 2611 C1 C16 A 318 -27.737 33.315 -7.373 1.00 93.00 C HETATM 2612 O HOH A 320 -26.882 10.540 -0.762 1.00 56.82 O HETATM 2613 O HOH A 321 -18.432 32.759 5.326 1.00 29.12 O HETATM 2614 O HOH A 322 -39.020 35.651 -4.956 1.00 21.15 O HETATM 2615 O HOH A 323 -41.084 12.791 -9.871 1.00 30.77 O HETATM 2616 O HOH A 324 -49.551 29.488 -18.673 1.00 10.24 O HETATM 2617 O HOH A 325 -51.072 29.768 -3.727 1.00 31.88 O HETATM 2618 O HOH A 326 -18.745 22.044 0.301 1.00 27.74 O HETATM 2619 O HOH A 327 -21.275 26.106 -3.753 1.00 31.56 O HETATM 2620 O HOH A 328 -21.410 39.466 -27.056 1.00 45.06 O HETATM 2621 O HOH A 329 -23.521 32.546 -23.194 1.00 26.80 O HETATM 2622 O HOH A 330 -20.764 32.218 4.612 1.00 33.96 O HETATM 2623 O HOH A 331 -33.886 29.511 -7.935 1.00 24.48 O HETATM 2624 O HOH A 332 -27.557 35.616 -24.604 1.00 28.58 O HETATM 2625 O HOH A 333 -37.064 27.336 -10.163 1.00 20.78 O HETATM 2626 O HOH A 334 -38.805 2.737 -2.875 1.00 48.03 O HETATM 2627 O HOH A 335 -33.153 54.970 -16.337 1.00 50.72 O HETATM 2628 O HOH A 336 -46.240 21.889 -11.649 1.00 13.08 O HETATM 2629 O HOH A 337 -24.565 17.929 5.682 1.00 32.92 O HETATM 2630 O HOH A 338 -43.288 25.743 -17.913 0.50 7.82 O HETATM 2631 O HOH A 339 -48.730 37.674 -9.956 1.00 30.00 O HETATM 2632 O HOH A 340 -53.316 25.149 -4.648 1.00 25.53 O HETATM 2633 O HOH A 341 -45.698 48.782 -9.486 1.00 54.46 O HETATM 2634 O HOH A 342 -50.631 17.041 -3.444 1.00 31.28 O HETATM 2635 O HOH A 343 -21.974 30.582 6.626 1.00 40.57 O HETATM 2636 O HOH A 344 -36.223 51.589 -16.147 1.00 37.11 O HETATM 2637 O HOH A 345 -32.472 42.230 -2.538 1.00 27.28 O HETATM 2638 O HOH A 346 -38.428 33.738 -11.415 1.00 31.82 O HETATM 2639 O HOH A 347 -15.058 13.587 -3.856 1.00 40.29 O HETATM 2640 O HOH A 348 -17.823 35.774 -6.623 1.00 41.75 O HETATM 2641 O HOH A 349 -53.336 39.883 -11.334 1.00 34.63 O HETATM 2642 O HOH A 350 -31.398 24.575 14.017 1.00 33.28 O HETATM 2643 O HOH A 351 -33.921 11.003 8.139 1.00 33.86 O HETATM 2644 O HOH A 352 -29.813 35.608 -23.785 1.00 36.20 O HETATM 2645 O HOH A 353 -28.226 10.798 3.732 1.00 32.81 O HETATM 2646 O HOH A 354 -14.706 43.385 -10.153 1.00 50.80 O HETATM 2647 O HOH A 355 -43.893 21.273 12.654 1.00 32.22 O HETATM 2648 O HOH A 356 -35.651 62.530 -11.904 1.00 50.82 O HETATM 2649 O HOH A 357 -45.993 55.242 -10.035 1.00 52.56 O HETATM 2650 O HOH A 358 -16.344 20.932 -0.699 1.00 31.43 O HETATM 2651 O HOH A 359 -34.381 17.148 19.335 1.00 26.92 O HETATM 2652 O HOH A 360 -43.186 12.340 3.607 1.00 45.52 O HETATM 2653 O HOH A 361 -38.690 4.842 -0.673 1.00 43.22 O HETATM 2654 O HOH A 362 -41.946 36.667 3.906 1.00 46.78 O HETATM 2655 O HOH A 363 -24.811 33.340 -25.275 1.00 38.88 O HETATM 2656 O HOH A 364 -46.957 13.437 -8.287 1.00 42.70 O HETATM 2657 O HOH A 365 -23.759 42.235 -17.137 1.00 40.80 O HETATM 2658 O HOH A 366 -57.549 28.155 -11.804 1.00 38.99 O HETATM 2659 O HOH A 367 -39.552 39.128 -14.427 1.00 37.26 O HETATM 2660 O HOH A 368 -25.556 21.161 14.150 1.00 46.25 O HETATM 2661 O HOH A 369 -35.317 39.074 -13.373 1.00 40.15 O HETATM 2662 O HOH A 370 -42.436 51.730 -13.516 1.00 51.31 O HETATM 2663 O HOH A 371 -13.488 33.821 3.563 1.00 45.47 O HETATM 2664 O HOH A 372 -47.442 23.814 10.337 1.00 42.56 O HETATM 2665 O HOH A 373 -46.717 44.608 -3.104 1.00 59.14 O HETATM 2666 O HOH A 374 -17.131 29.691 -7.466 1.00 47.60 O HETATM 2667 O HOH A 375 -33.418 9.932 -3.542 1.00 42.39 O HETATM 2668 O HOH A 376 -21.208 22.420 -26.018 1.00 35.62 O HETATM 2669 O HOH A 377 -16.015 23.618 4.976 1.00 39.19 O HETATM 2670 O HOH A 378 -19.708 39.012 -15.894 1.00 58.75 O HETATM 2671 O HOH A 379 -5.177 22.290 -5.996 1.00 31.43 O HETATM 2672 O HOH A 380 -21.081 13.641 -4.452 1.00 38.96 O HETATM 2673 O HOH A 381 -19.764 25.991 -27.909 1.00 40.27 O HETATM 2674 O HOH A 382 -48.407 52.739 3.691 1.00 37.36 O HETATM 2675 O HOH A 383 -37.951 22.116 17.689 0.50 29.44 O HETATM 2676 O HOH A 384 -20.548 18.815 -20.592 1.00 26.76 O HETATM 2677 O HOH A 385 -19.137 53.596 -9.291 1.00 46.72 O HETATM 2678 O HOH A 386 -29.973 17.880 9.611 1.00 38.44 O HETATM 2679 O HOH A 387 -19.857 50.147 -19.936 1.00 49.83 O HETATM 2680 O HOH A 388 -20.346 53.893 -14.657 1.00 46.40 O HETATM 2681 O HOH A 389 -42.185 32.149 -15.834 1.00 37.39 O HETATM 2682 O HOH A 390 -26.305 9.146 -4.179 1.00 43.41 O HETATM 2683 O HOH A 391 -19.156 33.549 -16.231 1.00 53.73 O HETATM 2684 O HOH A 392 -27.184 17.703 -15.992 1.00 55.06 O CONECT 2567 2568 2569 2570 2571 CONECT 2568 2567 CONECT 2569 2567 CONECT 2570 2567 CONECT 2571 2567 CONECT 2572 2573 2577 2580 CONECT 2573 2572 2574 2578 CONECT 2574 2573 2575 CONECT 2575 2574 2576 2579 CONECT 2576 2575 2577 CONECT 2577 2572 2576 CONECT 2578 2573 CONECT 2579 2575 CONECT 2580 2572 2581 2585 CONECT 2581 2580 2582 CONECT 2582 2581 2583 2584 CONECT 2583 2582 2585 2586 CONECT 2584 2582 CONECT 2585 2580 2583 CONECT 2586 2583 2587 CONECT 2587 2586 2588 CONECT 2588 2587 2589 2590 2591 CONECT 2589 2588 CONECT 2590 2588 CONECT 2591 2588 CONECT 2592 2593 CONECT 2593 2592 2594 CONECT 2594 2593 2595 2597 CONECT 2595 2594 2596 CONECT 2596 2595 2599 CONECT 2597 2594 2598 CONECT 2598 2597 2599 CONECT 2599 2596 2598 2600 CONECT 2600 2599 2601 2606 CONECT 2601 2600 2602 2603 CONECT 2602 2601 CONECT 2603 2601 2604 2608 CONECT 2604 2603 2605 CONECT 2605 2604 2611 CONECT 2606 2600 2607 2608 CONECT 2607 2606 CONECT 2608 2603 2606 2609 CONECT 2609 2608 2610 2611 CONECT 2610 2609 CONECT 2611 2605 2609 MASTER 304 0 3 14 10 0 7 6 2683 1 45 25 END