HEADER LYASE 17-DEC-07 3BO6 TITLE STRUCTURE OF THE CHROMOBACTERIUM VIOLACEUM VIRA (SPVC) TITLE 2 PHOSPHOTHREONINE LYASE EFFECTOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROPHILIC PROTEIN, VIRA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-241; COMPND 5 EC: 4.2.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 STRAIN: ATCC 12472; SOURCE 5 GENE: SPVC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS ALPHA/BETA FOLD OF PHOSPHOTHREONINE LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.F.BRENNAN,S.M.ROE,D.BARFORD REVDAT 6 13-MAR-24 3BO6 1 REMARK SEQADV REVDAT 5 25-OCT-17 3BO6 1 REMARK REVDAT 4 09-JUN-09 3BO6 1 REVDAT REVDAT 3 19-MAY-09 3BO6 1 REMARK REVDAT 2 24-FEB-09 3BO6 1 VERSN REVDAT 1 25-NOV-08 3BO6 0 JRNL AUTH D.F.BRENNAN,S.M.ROE,D.BARFORD JRNL TITL STRUCTURE AND MECHANISM OF THE CHROMOBACTERIUM VIOLACEUM JRNL TITL 2 VIRA PHOSPHOTHREONINE LYASE TYPE III SECRETION SYSTEM JRNL TITL 3 EFFECTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 71146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1120 - 7.1690 0.87 559 0 0.2240 0.0000 REMARK 3 2 7.1690 - 5.6950 0.90 572 0 0.2080 0.0000 REMARK 3 3 5.6950 - 4.9770 0.90 563 0 0.1840 0.0000 REMARK 3 4 4.9770 - 4.5230 0.89 567 0 0.1560 0.0000 REMARK 3 5 4.5230 - 4.1990 0.91 579 0 0.1360 0.0000 REMARK 3 6 4.1990 - 3.9510 0.90 568 0 0.1300 0.0000 REMARK 3 7 3.9510 - 3.7540 0.95 581 0 0.1210 0.0000 REMARK 3 8 3.7540 - 3.5900 0.92 591 0 0.1270 0.0000 REMARK 3 9 3.5900 - 3.4520 0.91 563 0 0.1340 0.0000 REMARK 3 10 3.4520 - 3.3330 0.94 595 0 0.1340 0.0000 REMARK 3 11 3.3330 - 3.2290 0.94 598 0 0.1360 0.0000 REMARK 3 12 3.2290 - 3.1370 0.95 585 0 0.1350 0.0000 REMARK 3 13 3.1370 - 3.0540 0.92 562 0 0.1280 0.0000 REMARK 3 14 3.0540 - 2.9800 0.93 598 0 0.1260 0.0000 REMARK 3 15 2.9800 - 2.9120 0.93 575 0 0.1400 0.0000 REMARK 3 16 2.9120 - 2.8500 0.95 592 0 0.1420 0.0000 REMARK 3 17 2.8500 - 2.7930 0.94 590 0 0.1600 0.0000 REMARK 3 18 2.7930 - 2.7400 0.94 586 0 0.1460 0.0000 REMARK 3 19 2.7400 - 2.6910 0.95 616 0 0.1480 0.0000 REMARK 3 20 2.6910 - 2.6460 0.94 559 0 0.1460 0.0000 REMARK 3 21 2.6460 - 2.6030 0.93 600 0 0.1550 0.0000 REMARK 3 22 2.6030 - 2.5630 0.94 592 0 0.1400 0.0000 REMARK 3 23 2.5630 - 2.5250 0.95 576 0 0.1410 0.0000 REMARK 3 24 2.5250 - 2.4900 0.94 581 0 0.1550 0.0000 REMARK 3 25 2.4900 - 2.4560 0.93 596 0 0.1450 0.0000 REMARK 3 26 2.4560 - 2.4240 0.92 570 0 0.1550 0.0000 REMARK 3 27 2.4240 - 2.3940 0.94 587 0 0.1570 0.0000 REMARK 3 28 2.3940 - 2.3650 0.94 581 0 0.1450 0.0000 REMARK 3 29 2.3650 - 2.3380 0.95 604 0 0.1410 0.0000 REMARK 3 30 2.3380 - 2.3110 0.95 587 0 0.1310 0.0000 REMARK 3 31 2.3110 - 2.2860 0.94 586 0 0.1480 0.0000 REMARK 3 32 2.2860 - 2.2620 0.93 578 0 0.1410 0.0000 REMARK 3 33 2.2620 - 2.2390 0.95 587 0 0.1450 0.0000 REMARK 3 34 2.2390 - 2.2170 0.94 588 0 0.1430 0.0000 REMARK 3 35 2.2170 - 2.1960 0.95 592 0 0.1490 0.0000 REMARK 3 36 2.1960 - 2.1750 0.93 595 0 0.1320 0.0000 REMARK 3 37 2.1750 - 2.1550 0.93 584 0 0.1420 0.0000 REMARK 3 38 2.1550 - 2.1360 0.94 562 0 0.1400 0.0000 REMARK 3 39 2.1360 - 2.1180 0.93 571 0 0.1450 0.0000 REMARK 3 40 2.1180 - 2.1000 0.95 608 0 0.1420 0.0000 REMARK 3 41 2.1000 - 2.0830 0.95 620 0 0.1480 0.0000 REMARK 3 42 2.0830 - 2.0660 0.93 570 0 0.1410 0.0000 REMARK 3 43 2.0660 - 2.0500 0.94 568 0 0.1430 0.0000 REMARK 3 44 2.0500 - 2.0340 0.93 562 0 0.1370 0.0000 REMARK 3 45 2.0340 - 2.0190 0.94 590 0 0.1420 0.0000 REMARK 3 46 2.0190 - 2.0040 0.95 612 0 0.1410 0.0000 REMARK 3 47 2.0040 - 1.9900 0.94 601 0 0.1430 0.0000 REMARK 3 48 1.9900 - 1.9760 0.94 582 0 0.1510 0.0000 REMARK 3 49 1.9760 - 1.9630 0.92 561 0 0.1510 0.0000 REMARK 3 50 1.9630 - 1.9490 0.91 546 0 0.1330 0.0000 REMARK 3 51 1.9490 - 1.9370 0.94 578 0 0.1460 0.0000 REMARK 3 52 1.9370 - 1.9240 0.90 573 0 0.1510 0.0000 REMARK 3 53 1.9240 - 1.9120 0.93 620 0 0.1530 0.0000 REMARK 3 54 1.9120 - 1.9000 0.92 556 0 0.1540 0.0000 REMARK 3 55 1.9000 - 1.8880 0.93 576 0 0.1480 0.0000 REMARK 3 56 1.8880 - 1.8770 0.93 575 0 0.1480 0.0000 REMARK 3 57 1.8770 - 1.8660 0.90 551 0 0.1560 0.0000 REMARK 3 58 1.8660 - 1.8550 0.91 565 0 0.1550 0.0000 REMARK 3 59 1.8550 - 1.8450 0.91 566 0 0.1470 0.0000 REMARK 3 60 1.8450 - 1.8340 0.92 583 0 0.1550 0.0000 REMARK 3 61 1.8340 - 1.8240 0.90 581 0 0.1580 0.0000 REMARK 3 62 1.8240 - 1.8150 0.87 537 0 0.1680 0.0000 REMARK 3 63 1.8150 - 1.8050 0.90 570 0 0.1620 0.0000 REMARK 3 64 1.8050 - 1.7960 0.88 531 0 0.1630 0.0000 REMARK 3 65 1.7960 - 1.7860 0.89 549 0 0.1710 0.0000 REMARK 3 66 1.7860 - 1.7770 0.88 537 0 0.1700 0.0000 REMARK 3 67 1.7770 - 1.7680 0.83 525 0 0.1600 0.0000 REMARK 3 68 1.7680 - 1.7600 0.84 552 0 0.1710 0.0000 REMARK 3 69 1.7600 - 1.7510 0.86 518 0 0.1730 0.0000 REMARK 3 70 1.7510 - 1.7430 0.84 536 0 0.1840 0.0000 REMARK 3 71 1.7430 - 1.7350 0.89 548 0 0.1620 0.0000 REMARK 3 72 1.7350 - 1.7260 0.85 531 0 0.1740 0.0000 REMARK 3 73 1.7260 - 1.7190 0.85 510 0 0.1820 0.0000 REMARK 3 74 1.7190 - 1.7110 0.83 511 0 0.1880 0.0000 REMARK 3 75 1.7110 - 1.7030 0.81 492 0 0.2010 0.0000 REMARK 3 76 1.7030 - 1.6960 0.74 473 0 0.1700 0.0000 REMARK 3 77 1.6960 - 1.6880 0.65 420 0 0.1560 0.0000 REMARK 3 78 1.6880 - 1.6810 0.67 433 0 0.1540 0.0000 REMARK 3 79 1.6810 - 1.6740 0.66 398 0 0.1590 0.0000 REMARK 3 80 1.6740 - 1.6670 0.68 420 0 0.1640 0.0000 REMARK 3 81 1.6670 - 1.6600 0.68 415 0 0.1540 0.0000 REMARK 3 82 1.6600 - 1.6530 0.68 402 0 0.1580 0.0000 REMARK 3 83 1.6530 - 1.6460 0.65 405 0 0.1680 0.0000 REMARK 3 84 1.6460 - 1.6400 0.64 405 0 0.1640 0.0000 REMARK 3 85 1.6400 - 1.6330 0.67 422 0 0.1690 0.0000 REMARK 3 86 1.6330 - 1.6270 0.65 410 0 0.1590 0.0000 REMARK 3 87 1.6270 - 1.6210 0.69 448 0 0.1740 0.0000 REMARK 3 88 1.6210 - 1.6150 0.67 410 0 0.1620 0.0000 REMARK 3 89 1.6150 - 1.6090 0.64 402 0 0.1520 0.0000 REMARK 3 90 1.6090 - 1.6030 0.67 409 0 0.1560 0.0000 REMARK 3 91 1.6030 - 1.5970 0.65 379 0 0.1560 0.0000 REMARK 3 92 1.5970 - 1.5910 0.71 466 0 0.1490 0.0000 REMARK 3 93 1.5910 - 1.5850 0.66 411 0 0.1630 0.0000 REMARK 3 94 1.5850 - 1.5800 0.67 400 0 0.1690 0.0000 REMARK 3 95 1.5800 - 1.5740 0.67 441 0 0.1540 0.0000 REMARK 3 96 1.5740 - 1.5690 0.64 399 0 0.1620 0.0000 REMARK 3 97 1.5690 - 1.5630 0.67 437 0 0.1660 0.0000 REMARK 3 98 1.5630 - 1.5580 0.68 422 0 0.1590 0.0000 REMARK 3 99 1.5580 - 1.5530 0.66 393 0 0.1800 0.0000 REMARK 3 100 1.5530 - 1.5470 0.66 414 0 0.1700 0.0000 REMARK 3 101 1.5470 - 1.5420 0.69 424 0 0.1840 0.0000 REMARK 3 102 1.5420 - 1.5370 0.68 422 0 0.1600 0.0000 REMARK 3 103 1.5370 - 1.5320 0.63 390 0 0.1890 0.0000 REMARK 3 104 1.5320 - 1.5270 0.65 414 0 0.1720 0.0000 REMARK 3 105 1.5270 - 1.5220 0.69 431 0 0.1810 0.0000 REMARK 3 106 1.5220 - 1.5180 0.66 409 0 0.1840 0.0000 REMARK 3 107 1.5180 - 1.5130 0.69 420 0 0.1630 0.0000 REMARK 3 108 1.5130 - 1.5080 0.68 441 0 0.1510 0.0000 REMARK 3 109 1.5080 - 1.5030 0.68 412 0 0.1830 0.0000 REMARK 3 110 1.5030 - 1.4990 0.64 415 0 0.1800 0.0000 REMARK 3 111 1.4990 - 1.4940 0.66 399 0 0.1810 0.0000 REMARK 3 112 1.4940 - 1.4900 0.68 425 0 0.1970 0.0000 REMARK 3 113 1.4900 - 1.4860 0.66 400 0 0.1740 0.0000 REMARK 3 114 1.4860 - 1.4810 0.68 422 0 0.1790 0.0000 REMARK 3 115 1.4810 - 1.4770 0.65 403 0 0.1770 0.0000 REMARK 3 116 1.4770 - 1.4730 0.63 404 0 0.1760 0.0000 REMARK 3 117 1.4730 - 1.4680 0.64 383 0 0.2000 0.0000 REMARK 3 118 1.4680 - 1.4640 0.65 408 0 0.1950 0.0000 REMARK 3 119 1.4640 - 1.4600 0.66 431 0 0.1890 0.0000 REMARK 3 120 1.4600 - 1.4560 0.66 414 0 0.1910 0.0000 REMARK 3 121 1.4560 - 1.4520 0.68 418 0 0.1950 0.0000 REMARK 3 122 1.4520 - 1.4480 0.66 414 0 0.1980 0.0000 REMARK 3 123 1.4480 - 1.4440 0.66 404 0 0.2040 0.0000 REMARK 3 124 1.4440 - 1.4400 0.66 393 0 0.2060 0.0000 REMARK 3 125 1.4400 - 1.4360 0.65 406 0 0.2180 0.0000 REMARK 3 126 1.4360 - 1.4330 0.65 407 0 0.2020 0.0000 REMARK 3 127 1.4330 - 1.4290 0.65 400 0 0.2130 0.0000 REMARK 3 128 1.4290 - 1.4250 0.64 385 0 0.2290 0.0000 REMARK 3 129 1.4250 - 1.4210 0.65 410 0 0.2170 0.0000 REMARK 3 130 1.4210 - 1.4180 0.66 407 0 0.2080 0.0000 REMARK 3 131 1.4180 - 1.4140 0.65 422 0 0.2320 0.0000 REMARK 3 132 1.4140 - 1.4110 0.65 422 0 0.2370 0.0000 REMARK 3 133 1.4110 - 1.4070 0.64 414 0 0.2180 0.0000 REMARK 3 134 1.4070 - 1.4030 0.63 380 0 0.2360 0.0000 REMARK 3 135 1.4030 - 1.4000 0.56 342 0 0.2650 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 81.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24700 REMARK 3 B22 (A**2) : -1.65000 REMARK 3 B33 (A**2) : -0.59600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.42600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 NULL REMARK 3 ANGLE : 1.330 NULL REMARK 3 CHIRALITY : 0.083 NULL REMARK 3 PLANARITY : 0.006 NULL REMARK 3 DIHEDRAL : 16.428 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A 22-241 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3364 -13.7544 9.7711 REMARK 3 T TENSOR REMARK 3 T11: 0.0210 T22: 0.0289 REMARK 3 T33: 0.0161 T12: -0.0013 REMARK 3 T13: -0.0023 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.1121 L22: 0.7290 REMARK 3 L33: 0.0926 L12: -0.0276 REMARK 3 L13: 0.0737 L23: 0.0773 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0035 S13: 0.0006 REMARK 3 S21: -0.0611 S22: -0.0049 S23: 0.0071 REMARK 3 S31: 0.0084 S32: -0.0066 S33: -0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH REMARK 3 REFMAC 5.2 REMARK 4 REMARK 4 3BO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-07; 30-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; ESRF REMARK 200 BEAMLINE : I03; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92; 0.97866, 0.97893, 0.88560 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL; SI REMARK 200 (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; MAR SCANNER REMARK 200 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.888 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MOLREP, SHELX, SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M AMMONIUM SULPHATE, 0.1M BICINE, REMARK 280 PH8.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K. 1M REMARK 280 AMMONIUM SULPHATE, 0.1M TRIS-HCL, PH8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.88850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 22 REMARK 465 PRO B 23 REMARK 465 PRO B 24 REMARK 465 GLN B 25 REMARK 465 MET B 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ASN B 93 CG OD1 ND2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 377 2.05 REMARK 500 O HOH A 302 O HOH A 382 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 66 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 70 129.41 -173.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 DBREF 3BO6 A 24 241 UNP Q7NYG6 Q7NYG6_CHRVO 24 241 DBREF 3BO6 B 24 241 UNP Q7NYG6 Q7NYG6_CHRVO 24 241 SEQADV 3BO6 GLY A 22 UNP Q7NYG6 EXPRESSION TAG SEQADV 3BO6 PRO A 23 UNP Q7NYG6 EXPRESSION TAG SEQADV 3BO6 GLY B 22 UNP Q7NYG6 EXPRESSION TAG SEQADV 3BO6 PRO B 23 UNP Q7NYG6 EXPRESSION TAG SEQRES 1 A 220 GLY PRO PRO GLN MET SER ALA THR ASN GLU ASP LEU LYS SEQRES 2 A 220 THR ASN PHE HIS SER LEU HIS ASN GLN MET ARG GLN MET SEQRES 3 A 220 PRO MET SER HIS PHE ARG GLU ALA LEU ASP ALA PRO ASP SEQRES 4 A 220 TYR SER GLY MET ARG GLN SER GLY PHE PHE ALA MET SER SEQRES 5 A 220 GLN GLY PHE GLN LEU GLU SER HIS GLY GLY ASP VAL PHE SEQRES 6 A 220 MET HIS ALA HIS ARG GLU ASN PRO GLN CYS LYS GLY ASP SEQRES 7 A 220 PHE ALA GLY ASP LYS PHE HIS ILE SER VAL GLN ARG GLU SEQRES 8 A 220 GLN VAL PRO GLN ALA PHE GLN ALA LEU SER GLY LEU LEU SEQRES 9 A 220 PHE SER VAL ASP SER PRO ILE ASP LYS TRP LYS VAL THR SEQRES 10 A 220 ASP MET GLU ARG VAL ASP GLN GLN SER ARG VAL ALA VAL SEQRES 11 A 220 GLY ALA GLN PHE THR LEU TYR VAL LYS PRO ASP GLN GLU SEQRES 12 A 220 ASN SER GLN TYR SER ALA SER SER LEU HIS ASN THR ARG SEQRES 13 A 220 GLN PHE ILE GLU CYS LEU GLU SER ARG LEU SER GLU SER SEQRES 14 A 220 GLY LEU MET PRO GLY GLN TYR PRO GLU SER ASP VAL HIS SEQRES 15 A 220 PRO GLU ASN TRP LYS TYR VAL SER TYR ARG ASN GLU LEU SEQRES 16 A 220 ARG SER GLY ARG ASP GLY GLY GLU MET GLN SER GLN ALA SEQRES 17 A 220 LEU ARG GLU GLU PRO PHE TYR ARG LEU MET ALA GLU SEQRES 1 B 220 GLY PRO PRO GLN MET SER ALA THR ASN GLU ASP LEU LYS SEQRES 2 B 220 THR ASN PHE HIS SER LEU HIS ASN GLN MET ARG GLN MET SEQRES 3 B 220 PRO MET SER HIS PHE ARG GLU ALA LEU ASP ALA PRO ASP SEQRES 4 B 220 TYR SER GLY MET ARG GLN SER GLY PHE PHE ALA MET SER SEQRES 5 B 220 GLN GLY PHE GLN LEU GLU SER HIS GLY GLY ASP VAL PHE SEQRES 6 B 220 MET HIS ALA HIS ARG GLU ASN PRO GLN CYS LYS GLY ASP SEQRES 7 B 220 PHE ALA GLY ASP LYS PHE HIS ILE SER VAL GLN ARG GLU SEQRES 8 B 220 GLN VAL PRO GLN ALA PHE GLN ALA LEU SER GLY LEU LEU SEQRES 9 B 220 PHE SER VAL ASP SER PRO ILE ASP LYS TRP LYS VAL THR SEQRES 10 B 220 ASP MET GLU ARG VAL ASP GLN GLN SER ARG VAL ALA VAL SEQRES 11 B 220 GLY ALA GLN PHE THR LEU TYR VAL LYS PRO ASP GLN GLU SEQRES 12 B 220 ASN SER GLN TYR SER ALA SER SER LEU HIS ASN THR ARG SEQRES 13 B 220 GLN PHE ILE GLU CYS LEU GLU SER ARG LEU SER GLU SER SEQRES 14 B 220 GLY LEU MET PRO GLY GLN TYR PRO GLU SER ASP VAL HIS SEQRES 15 B 220 PRO GLU ASN TRP LYS TYR VAL SER TYR ARG ASN GLU LEU SEQRES 16 B 220 ARG SER GLY ARG ASP GLY GLY GLU MET GLN SER GLN ALA SEQRES 17 B 220 LEU ARG GLU GLU PRO PHE TYR ARG LEU MET ALA GLU HET SO4 A 1 5 HET SO4 B 2 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *680(H2 O) HELIX 1 1 SER A 27 ASN A 36 1 10 HELIX 2 2 ASN A 36 GLN A 46 1 11 HELIX 3 3 ASP A 60 GLN A 66 1 7 HELIX 4 4 GLN A 110 GLU A 112 5 3 HELIX 5 5 GLN A 113 PHE A 126 1 14 HELIX 6 6 SER A 169 SER A 190 1 22 HELIX 7 7 GLY A 223 MET A 225 5 3 HELIX 8 8 GLN A 226 GLU A 232 1 7 HELIX 9 9 GLU A 233 GLU A 241 1 9 HELIX 10 10 SER B 27 ASN B 36 1 10 HELIX 11 11 ASN B 36 MET B 47 1 12 HELIX 12 12 TYR B 61 ARG B 65 5 5 HELIX 13 13 GLN B 110 GLU B 112 5 3 HELIX 14 14 GLN B 113 PHE B 126 1 14 HELIX 15 15 SER B 169 SER B 190 1 22 HELIX 16 16 GLY B 223 GLU B 232 1 10 HELIX 17 17 GLU B 233 GLU B 241 1 9 SHEET 1 A 7 GLY A 68 SER A 73 0 SHEET 2 A 7 PHE A 76 SER A 80 -1 O LEU A 78 N ALA A 71 SHEET 3 A 7 PHE A 86 ARG A 91 -1 O HIS A 90 N GLN A 77 SHEET 4 A 7 LYS A 134 THR A 138 -1 O TRP A 135 N ALA A 89 SHEET 5 A 7 PHE A 155 TYR A 158 -1 O THR A 156 N LYS A 136 SHEET 6 A 7 ASP A 103 ILE A 107 -1 N PHE A 105 O LEU A 157 SHEET 7 A 7 VAL A 210 ASN A 214 -1 O SER A 211 N HIS A 106 SHEET 1 B 7 MET B 72 SER B 73 0 SHEET 2 B 7 PHE B 76 GLU B 79 -1 O PHE B 76 N SER B 73 SHEET 3 B 7 PHE B 86 ARG B 91 -1 O HIS B 88 N GLU B 79 SHEET 4 B 7 LYS B 134 THR B 138 -1 O VAL B 137 N MET B 87 SHEET 5 B 7 PHE B 155 TYR B 158 -1 O THR B 156 N LYS B 136 SHEET 6 B 7 ASP B 103 ILE B 107 -1 N PHE B 105 O LEU B 157 SHEET 7 B 7 VAL B 210 ASN B 214 -1 O SER B 211 N HIS B 106 SITE 1 AC1 6 LYS A 104 HIS A 106 ARG A 148 ARG A 213 SITE 2 AC1 6 ARG A 220 HOH A 341 SITE 1 AC2 6 LYS B 104 HIS B 106 ARG B 148 ARG B 213 SITE 2 AC2 6 ARG B 220 HOH B 287 CRYST1 42.671 119.777 44.492 90.00 105.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023435 0.000000 0.006555 0.00000 SCALE2 0.000000 0.008349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023338 0.00000