data_3BOD # _entry.id 3BOD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BOD pdb_00003bod 10.2210/pdb3bod/pdb RCSB RCSB045765 ? ? WWPDB D_1000045765 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_ref_seq_dif.details' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3BOD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koehnke, J.' 1 'Jin, X.' 2 'Shapiro, L.' 3 # _citation.id primary _citation.title 'Crystal Structures of beta-Neurexin 1 and beta-Neurexin 2 Ectodomains and Dynamics of Splice Insertion Sequence 4.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 410 _citation.page_last 421 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18334216 _citation.pdbx_database_id_DOI 10.1016/j.str.2007.12.024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koehnke, J.' 1 ? primary 'Jin, X.' 2 ? primary 'Trbovic, N.' 3 ? primary 'Katsamba, P.S.' 4 ? primary 'Brasch, J.' 5 ? primary 'Ahlsen, G.' 6 ? primary 'Scheiffele, P.' 7 ? primary 'Honig, B.' 8 ? primary 'Palmer, A.G.' 9 ? primary 'Shapiro, L.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Neurexin-1-alpha 19311.711 1 ? ? 'LNS domain' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 188 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurexin I-alpha' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APLGSTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIA IEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLN MAAENDANIAIVGNVRLV ; _entity_poly.pdbx_seq_one_letter_code_can ;APLGSTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIA IEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLN MAAENDANIAIVGNVRLV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 THR n 1 7 TYR n 1 8 ILE n 1 9 PHE n 1 10 SER n 1 11 LYS n 1 12 GLY n 1 13 GLY n 1 14 GLY n 1 15 GLN n 1 16 ILE n 1 17 THR n 1 18 TYR n 1 19 LYS n 1 20 TRP n 1 21 PRO n 1 22 PRO n 1 23 ASN n 1 24 ASP n 1 25 ARG n 1 26 PRO n 1 27 SER n 1 28 THR n 1 29 ARG n 1 30 ALA n 1 31 ASP n 1 32 ARG n 1 33 LEU n 1 34 ALA n 1 35 ILE n 1 36 GLY n 1 37 PHE n 1 38 SER n 1 39 THR n 1 40 VAL n 1 41 GLN n 1 42 LYS n 1 43 GLU n 1 44 ALA n 1 45 VAL n 1 46 LEU n 1 47 VAL n 1 48 ARG n 1 49 VAL n 1 50 ASP n 1 51 SER n 1 52 SER n 1 53 SER n 1 54 GLY n 1 55 LEU n 1 56 GLY n 1 57 ASP n 1 58 TYR n 1 59 LEU n 1 60 GLU n 1 61 LEU n 1 62 HIS n 1 63 ILE n 1 64 HIS n 1 65 GLN n 1 66 GLY n 1 67 LYS n 1 68 ILE n 1 69 GLY n 1 70 VAL n 1 71 LYS n 1 72 PHE n 1 73 ASN n 1 74 VAL n 1 75 GLY n 1 76 THR n 1 77 ASP n 1 78 ASP n 1 79 ILE n 1 80 ALA n 1 81 ILE n 1 82 GLU n 1 83 GLU n 1 84 SER n 1 85 ASN n 1 86 ALA n 1 87 ILE n 1 88 ILE n 1 89 ASN n 1 90 ASP n 1 91 GLY n 1 92 LYS n 1 93 TYR n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 ARG n 1 98 PHE n 1 99 THR n 1 100 ARG n 1 101 SER n 1 102 GLY n 1 103 GLY n 1 104 ASN n 1 105 ALA n 1 106 THR n 1 107 LEU n 1 108 GLN n 1 109 VAL n 1 110 ASP n 1 111 SER n 1 112 TRP n 1 113 PRO n 1 114 VAL n 1 115 ILE n 1 116 GLU n 1 117 ARG n 1 118 TYR n 1 119 PRO n 1 120 ALA n 1 121 GLY n 1 122 ARG n 1 123 GLN n 1 124 LEU n 1 125 THR n 1 126 ILE n 1 127 PHE n 1 128 ASN n 1 129 SER n 1 130 GLN n 1 131 ALA n 1 132 THR n 1 133 ILE n 1 134 ILE n 1 135 ILE n 1 136 GLY n 1 137 GLY n 1 138 LYS n 1 139 GLU n 1 140 GLN n 1 141 GLY n 1 142 GLN n 1 143 PRO n 1 144 PHE n 1 145 GLN n 1 146 GLY n 1 147 GLN n 1 148 LEU n 1 149 SER n 1 150 GLY n 1 151 LEU n 1 152 TYR n 1 153 TYR n 1 154 ASN n 1 155 GLY n 1 156 LEU n 1 157 LYS n 1 158 VAL n 1 159 LEU n 1 160 ASN n 1 161 MET n 1 162 ALA n 1 163 ALA n 1 164 GLU n 1 165 ASN n 1 166 ASP n 1 167 ALA n 1 168 ASN n 1 169 ILE n 1 170 ALA n 1 171 ILE n 1 172 VAL n 1 173 GLY n 1 174 ASN n 1 175 VAL n 1 176 ARG n 1 177 LEU n 1 178 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 6 120 'house mouse' Mus 'Nrxn1, Kiaa0578' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 Escherichia ? ? 'Escherichia coli' ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pGEX-NRX1D ? ? 1 2 sample ? 121 178 'house mouse' Mus 'Nrxn1, Kiaa0578' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 Escherichia ? ? 'Escherichia coli' ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pGEX-NRX1D ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 81 81 ALA ALA A . n A 1 2 PRO 2 82 82 PRO PRO A . n A 1 3 LEU 3 83 83 LEU LEU A . n A 1 4 GLY 4 84 84 GLY GLY A . n A 1 5 SER 5 85 85 SER SER A . n A 1 6 THR 6 86 86 THR THR A . n A 1 7 TYR 7 87 87 TYR TYR A . n A 1 8 ILE 8 88 88 ILE ILE A . n A 1 9 PHE 9 89 89 PHE PHE A . n A 1 10 SER 10 90 90 SER SER A . n A 1 11 LYS 11 91 91 LYS LYS A . n A 1 12 GLY 12 92 92 GLY GLY A . n A 1 13 GLY 13 93 93 GLY GLY A . n A 1 14 GLY 14 94 94 GLY GLY A . n A 1 15 GLN 15 95 95 GLN GLN A . n A 1 16 ILE 16 96 96 ILE ILE A . n A 1 17 THR 17 97 97 THR THR A . n A 1 18 TYR 18 98 98 TYR TYR A . n A 1 19 LYS 19 99 99 LYS LYS A . n A 1 20 TRP 20 100 100 TRP TRP A . n A 1 21 PRO 21 101 101 PRO PRO A . n A 1 22 PRO 22 102 102 PRO PRO A . n A 1 23 ASN 23 103 103 ASN ASN A . n A 1 24 ASP 24 104 104 ASP ASP A . n A 1 25 ARG 25 105 105 ARG ARG A . n A 1 26 PRO 26 106 106 PRO PRO A . n A 1 27 SER 27 107 107 SER SER A . n A 1 28 THR 28 108 108 THR THR A . n A 1 29 ARG 29 109 109 ARG ARG A . n A 1 30 ALA 30 110 110 ALA ALA A . n A 1 31 ASP 31 111 111 ASP ASP A . n A 1 32 ARG 32 112 112 ARG ARG A . n A 1 33 LEU 33 113 113 LEU LEU A . n A 1 34 ALA 34 114 114 ALA ALA A . n A 1 35 ILE 35 115 115 ILE ILE A . n A 1 36 GLY 36 116 116 GLY GLY A . n A 1 37 PHE 37 117 117 PHE PHE A . n A 1 38 SER 38 118 118 SER SER A . n A 1 39 THR 39 119 119 THR THR A . n A 1 40 VAL 40 120 120 VAL VAL A . n A 1 41 GLN 41 121 121 GLN GLN A . n A 1 42 LYS 42 122 122 LYS LYS A . n A 1 43 GLU 43 123 123 GLU GLU A . n A 1 44 ALA 44 124 124 ALA ALA A . n A 1 45 VAL 45 125 125 VAL VAL A . n A 1 46 LEU 46 126 126 LEU LEU A . n A 1 47 VAL 47 127 127 VAL VAL A . n A 1 48 ARG 48 128 128 ARG ARG A . n A 1 49 VAL 49 129 129 VAL VAL A . n A 1 50 ASP 50 130 130 ASP ASP A . n A 1 51 SER 51 131 131 SER SER A . n A 1 52 SER 52 132 132 SER SER A . n A 1 53 SER 53 133 133 SER SER A . n A 1 54 GLY 54 134 134 GLY GLY A . n A 1 55 LEU 55 135 135 LEU LEU A . n A 1 56 GLY 56 136 136 GLY GLY A . n A 1 57 ASP 57 137 137 ASP ASP A . n A 1 58 TYR 58 138 138 TYR TYR A . n A 1 59 LEU 59 139 139 LEU LEU A . n A 1 60 GLU 60 140 140 GLU GLU A . n A 1 61 LEU 61 141 141 LEU LEU A . n A 1 62 HIS 62 142 142 HIS HIS A . n A 1 63 ILE 63 143 143 ILE ILE A . n A 1 64 HIS 64 144 144 HIS HIS A . n A 1 65 GLN 65 145 145 GLN GLN A . n A 1 66 GLY 66 146 146 GLY GLY A . n A 1 67 LYS 67 147 147 LYS LYS A . n A 1 68 ILE 68 148 148 ILE ILE A . n A 1 69 GLY 69 149 149 GLY GLY A . n A 1 70 VAL 70 150 150 VAL VAL A . n A 1 71 LYS 71 151 151 LYS LYS A . n A 1 72 PHE 72 152 152 PHE PHE A . n A 1 73 ASN 73 153 153 ASN ASN A . n A 1 74 VAL 74 154 154 VAL VAL A . n A 1 75 GLY 75 155 155 GLY GLY A . n A 1 76 THR 76 156 156 THR THR A . n A 1 77 ASP 77 157 157 ASP ASP A . n A 1 78 ASP 78 158 158 ASP ASP A . n A 1 79 ILE 79 159 159 ILE ILE A . n A 1 80 ALA 80 160 160 ALA ALA A . n A 1 81 ILE 81 161 161 ILE ILE A . n A 1 82 GLU 82 162 162 GLU GLU A . n A 1 83 GLU 83 163 163 GLU GLU A . n A 1 84 SER 84 164 164 SER SER A . n A 1 85 ASN 85 165 165 ASN ASN A . n A 1 86 ALA 86 166 166 ALA ALA A . n A 1 87 ILE 87 167 167 ILE ILE A . n A 1 88 ILE 88 168 168 ILE ILE A . n A 1 89 ASN 89 169 169 ASN ASN A . n A 1 90 ASP 90 170 170 ASP ASP A . n A 1 91 GLY 91 171 171 GLY GLY A . n A 1 92 LYS 92 172 172 LYS LYS A . n A 1 93 TYR 93 173 173 TYR TYR A . n A 1 94 HIS 94 174 174 HIS HIS A . n A 1 95 VAL 95 175 175 VAL VAL A . n A 1 96 VAL 96 176 176 VAL VAL A . n A 1 97 ARG 97 177 177 ARG ARG A . n A 1 98 PHE 98 178 178 PHE PHE A . n A 1 99 THR 99 179 179 THR THR A . n A 1 100 ARG 100 180 180 ARG ARG A . n A 1 101 SER 101 181 181 SER SER A . n A 1 102 GLY 102 182 182 GLY GLY A . n A 1 103 GLY 103 183 183 GLY GLY A . n A 1 104 ASN 104 184 184 ASN ASN A . n A 1 105 ALA 105 185 185 ALA ALA A . n A 1 106 THR 106 186 186 THR THR A . n A 1 107 LEU 107 187 187 LEU LEU A . n A 1 108 GLN 108 188 188 GLN GLN A . n A 1 109 VAL 109 189 189 VAL VAL A . n A 1 110 ASP 110 190 190 ASP ASP A . n A 1 111 SER 111 191 191 SER SER A . n A 1 112 TRP 112 192 192 TRP TRP A . n A 1 113 PRO 113 193 193 PRO PRO A . n A 1 114 VAL 114 194 194 VAL VAL A . n A 1 115 ILE 115 195 195 ILE ILE A . n A 1 116 GLU 116 196 196 GLU GLU A . n A 1 117 ARG 117 197 197 ARG ARG A . n A 1 118 TYR 118 198 198 TYR TYR A . n A 1 119 PRO 119 199 199 PRO PRO A . n A 1 120 ALA 120 200 200 ALA ALA A . n A 1 121 GLY 121 201 201 GLY GLY A . n A 1 122 ARG 122 202 202 ARG ARG A . n A 1 123 GLN 123 203 203 GLN GLN A . n A 1 124 LEU 124 204 204 LEU LEU A . n A 1 125 THR 125 205 205 THR THR A . n A 1 126 ILE 126 206 206 ILE ILE A . n A 1 127 PHE 127 207 207 PHE PHE A . n A 1 128 ASN 128 208 208 ASN ASN A . n A 1 129 SER 129 209 209 SER SER A . n A 1 130 GLN 130 210 210 GLN GLN A . n A 1 131 ALA 131 211 211 ALA ALA A . n A 1 132 THR 132 212 212 THR THR A . n A 1 133 ILE 133 213 213 ILE ILE A . n A 1 134 ILE 134 214 214 ILE ILE A . n A 1 135 ILE 135 215 215 ILE ILE A . n A 1 136 GLY 136 216 216 GLY GLY A . n A 1 137 GLY 137 217 217 GLY GLY A . n A 1 138 LYS 138 218 218 LYS LYS A . n A 1 139 GLU 139 219 219 GLU GLU A . n A 1 140 GLN 140 220 220 GLN GLN A . n A 1 141 GLY 141 221 221 GLY GLY A . n A 1 142 GLN 142 222 222 GLN GLN A . n A 1 143 PRO 143 223 223 PRO PRO A . n A 1 144 PHE 144 224 224 PHE PHE A . n A 1 145 GLN 145 225 225 GLN GLN A . n A 1 146 GLY 146 226 226 GLY GLY A . n A 1 147 GLN 147 227 227 GLN GLN A . n A 1 148 LEU 148 228 228 LEU LEU A . n A 1 149 SER 149 229 229 SER SER A . n A 1 150 GLY 150 230 230 GLY GLY A . n A 1 151 LEU 151 231 231 LEU LEU A . n A 1 152 TYR 152 232 232 TYR TYR A . n A 1 153 TYR 153 233 233 TYR TYR A . n A 1 154 ASN 154 234 234 ASN ASN A . n A 1 155 GLY 155 235 235 GLY GLY A . n A 1 156 LEU 156 236 236 LEU LEU A . n A 1 157 LYS 157 237 237 LYS LYS A . n A 1 158 VAL 158 238 238 VAL VAL A . n A 1 159 LEU 159 239 239 LEU LEU A . n A 1 160 ASN 160 240 240 ASN ASN A . n A 1 161 MET 161 241 241 MET MET A . n A 1 162 ALA 162 242 242 ALA ALA A . n A 1 163 ALA 163 243 243 ALA ALA A . n A 1 164 GLU 164 244 244 GLU GLU A . n A 1 165 ASN 165 245 245 ASN ASN A . n A 1 166 ASP 166 246 246 ASP ASP A . n A 1 167 ALA 167 247 247 ALA ALA A . n A 1 168 ASN 168 248 248 ASN ASN A . n A 1 169 ILE 169 249 249 ILE ILE A . n A 1 170 ALA 170 250 250 ALA ALA A . n A 1 171 ILE 171 251 251 ILE ILE A . n A 1 172 VAL 172 252 252 VAL VAL A . n A 1 173 GLY 173 253 253 GLY GLY A . n A 1 174 ASN 174 254 254 ASN ASN A . n A 1 175 VAL 175 255 255 VAL VAL A . n A 1 176 ARG 176 256 256 ARG ARG A . n A 1 177 LEU 177 257 257 LEU LEU A . n A 1 178 VAL 178 258 258 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 3 HOH 1 259 1 HOH HOH A . C 3 HOH 2 260 2 HOH HOH A . C 3 HOH 3 261 3 HOH HOH A . C 3 HOH 4 262 4 HOH HOH A . C 3 HOH 5 263 5 HOH HOH A . C 3 HOH 6 264 6 HOH HOH A . C 3 HOH 7 265 7 HOH HOH A . C 3 HOH 8 266 8 HOH HOH A . C 3 HOH 9 267 9 HOH HOH A . C 3 HOH 10 268 10 HOH HOH A . C 3 HOH 11 269 11 HOH HOH A . C 3 HOH 12 270 12 HOH HOH A . C 3 HOH 13 271 13 HOH HOH A . C 3 HOH 14 272 14 HOH HOH A . C 3 HOH 15 273 15 HOH HOH A . C 3 HOH 16 274 16 HOH HOH A . C 3 HOH 17 275 17 HOH HOH A . C 3 HOH 18 276 18 HOH HOH A . C 3 HOH 19 277 19 HOH HOH A . C 3 HOH 20 278 20 HOH HOH A . C 3 HOH 21 279 21 HOH HOH A . C 3 HOH 22 280 22 HOH HOH A . C 3 HOH 23 281 23 HOH HOH A . C 3 HOH 24 282 24 HOH HOH A . C 3 HOH 25 283 25 HOH HOH A . C 3 HOH 26 284 26 HOH HOH A . C 3 HOH 27 285 27 HOH HOH A . C 3 HOH 28 286 28 HOH HOH A . C 3 HOH 29 287 29 HOH HOH A . C 3 HOH 30 288 30 HOH HOH A . C 3 HOH 31 289 31 HOH HOH A . C 3 HOH 32 290 32 HOH HOH A . C 3 HOH 33 291 33 HOH HOH A . C 3 HOH 34 292 34 HOH HOH A . C 3 HOH 35 293 35 HOH HOH A . C 3 HOH 36 294 36 HOH HOH A . C 3 HOH 37 295 37 HOH HOH A . C 3 HOH 38 296 38 HOH HOH A . C 3 HOH 39 297 39 HOH HOH A . C 3 HOH 40 298 40 HOH HOH A . C 3 HOH 41 299 41 HOH HOH A . C 3 HOH 42 300 42 HOH HOH A . C 3 HOH 43 301 43 HOH HOH A . C 3 HOH 44 302 44 HOH HOH A . C 3 HOH 45 303 45 HOH HOH A . C 3 HOH 46 304 46 HOH HOH A . C 3 HOH 47 305 47 HOH HOH A . C 3 HOH 48 306 48 HOH HOH A . C 3 HOH 49 307 49 HOH HOH A . C 3 HOH 50 308 50 HOH HOH A . C 3 HOH 51 309 51 HOH HOH A . C 3 HOH 52 310 52 HOH HOH A . C 3 HOH 53 311 53 HOH HOH A . C 3 HOH 54 312 54 HOH HOH A . C 3 HOH 55 313 55 HOH HOH A . C 3 HOH 56 314 56 HOH HOH A . C 3 HOH 57 315 57 HOH HOH A . C 3 HOH 58 316 58 HOH HOH A . C 3 HOH 59 317 59 HOH HOH A . C 3 HOH 60 318 60 HOH HOH A . C 3 HOH 61 319 61 HOH HOH A . C 3 HOH 62 320 62 HOH HOH A . C 3 HOH 63 321 63 HOH HOH A . C 3 HOH 64 322 64 HOH HOH A . C 3 HOH 65 323 65 HOH HOH A . C 3 HOH 66 324 66 HOH HOH A . C 3 HOH 67 325 67 HOH HOH A . C 3 HOH 68 326 68 HOH HOH A . C 3 HOH 69 327 69 HOH HOH A . C 3 HOH 70 328 70 HOH HOH A . C 3 HOH 71 329 71 HOH HOH A . C 3 HOH 72 330 72 HOH HOH A . C 3 HOH 73 331 73 HOH HOH A . C 3 HOH 74 332 74 HOH HOH A . C 3 HOH 75 333 75 HOH HOH A . C 3 HOH 76 334 76 HOH HOH A . C 3 HOH 77 335 77 HOH HOH A . C 3 HOH 78 336 78 HOH HOH A . C 3 HOH 79 337 79 HOH HOH A . C 3 HOH 80 338 80 HOH HOH A . C 3 HOH 81 339 81 HOH HOH A . C 3 HOH 82 340 82 HOH HOH A . C 3 HOH 83 341 83 HOH HOH A . C 3 HOH 84 342 84 HOH HOH A . C 3 HOH 85 343 85 HOH HOH A . C 3 HOH 86 344 86 HOH HOH A . C 3 HOH 87 345 87 HOH HOH A . C 3 HOH 88 346 88 HOH HOH A . C 3 HOH 89 347 89 HOH HOH A . C 3 HOH 90 348 90 HOH HOH A . C 3 HOH 91 349 91 HOH HOH A . C 3 HOH 92 350 92 HOH HOH A . C 3 HOH 93 351 93 HOH HOH A . C 3 HOH 94 352 94 HOH HOH A . C 3 HOH 95 353 95 HOH HOH A . C 3 HOH 96 354 96 HOH HOH A . C 3 HOH 97 355 97 HOH HOH A . C 3 HOH 98 356 98 HOH HOH A . C 3 HOH 99 357 99 HOH HOH A . C 3 HOH 100 358 100 HOH HOH A . C 3 HOH 101 359 101 HOH HOH A . C 3 HOH 102 360 102 HOH HOH A . C 3 HOH 103 361 103 HOH HOH A . C 3 HOH 104 362 104 HOH HOH A . C 3 HOH 105 363 105 HOH HOH A . C 3 HOH 106 364 106 HOH HOH A . C 3 HOH 107 365 107 HOH HOH A . C 3 HOH 108 366 108 HOH HOH A . C 3 HOH 109 367 109 HOH HOH A . C 3 HOH 110 368 110 HOH HOH A . C 3 HOH 111 369 111 HOH HOH A . C 3 HOH 112 370 112 HOH HOH A . C 3 HOH 113 371 113 HOH HOH A . C 3 HOH 114 372 114 HOH HOH A . C 3 HOH 115 373 115 HOH HOH A . C 3 HOH 116 374 116 HOH HOH A . C 3 HOH 117 375 117 HOH HOH A . C 3 HOH 118 376 118 HOH HOH A . C 3 HOH 119 377 119 HOH HOH A . C 3 HOH 120 378 120 HOH HOH A . C 3 HOH 121 379 121 HOH HOH A . C 3 HOH 122 380 122 HOH HOH A . C 3 HOH 123 381 123 HOH HOH A . C 3 HOH 124 382 124 HOH HOH A . C 3 HOH 125 383 125 HOH HOH A . C 3 HOH 126 384 126 HOH HOH A . C 3 HOH 127 385 127 HOH HOH A . C 3 HOH 128 386 128 HOH HOH A . C 3 HOH 129 387 129 HOH HOH A . C 3 HOH 130 388 130 HOH HOH A . C 3 HOH 131 389 131 HOH HOH A . C 3 HOH 132 390 132 HOH HOH A . C 3 HOH 133 391 133 HOH HOH A . C 3 HOH 134 392 134 HOH HOH A . C 3 HOH 135 393 135 HOH HOH A . C 3 HOH 136 394 136 HOH HOH A . C 3 HOH 137 395 137 HOH HOH A . C 3 HOH 138 396 138 HOH HOH A . C 3 HOH 139 397 139 HOH HOH A . C 3 HOH 140 398 140 HOH HOH A . C 3 HOH 141 399 141 HOH HOH A . C 3 HOH 142 400 142 HOH HOH A . C 3 HOH 143 401 143 HOH HOH A . C 3 HOH 144 402 144 HOH HOH A . C 3 HOH 145 403 145 HOH HOH A . C 3 HOH 146 404 146 HOH HOH A . C 3 HOH 147 405 147 HOH HOH A . C 3 HOH 148 406 148 HOH HOH A . C 3 HOH 149 407 149 HOH HOH A . C 3 HOH 150 408 150 HOH HOH A . C 3 HOH 151 409 151 HOH HOH A . C 3 HOH 152 410 152 HOH HOH A . C 3 HOH 153 411 153 HOH HOH A . C 3 HOH 154 412 154 HOH HOH A . C 3 HOH 155 413 155 HOH HOH A . C 3 HOH 156 414 156 HOH HOH A . C 3 HOH 157 415 157 HOH HOH A . C 3 HOH 158 416 158 HOH HOH A . C 3 HOH 159 417 159 HOH HOH A . C 3 HOH 160 418 160 HOH HOH A . C 3 HOH 161 419 161 HOH HOH A . C 3 HOH 162 420 162 HOH HOH A . C 3 HOH 163 421 163 HOH HOH A . C 3 HOH 164 422 164 HOH HOH A . C 3 HOH 165 423 165 HOH HOH A . C 3 HOH 166 424 166 HOH HOH A . C 3 HOH 167 425 167 HOH HOH A . C 3 HOH 168 426 168 HOH HOH A . C 3 HOH 169 427 169 HOH HOH A . C 3 HOH 170 428 170 HOH HOH A . C 3 HOH 171 429 171 HOH HOH A . C 3 HOH 172 430 172 HOH HOH A . C 3 HOH 173 431 173 HOH HOH A . C 3 HOH 174 432 174 HOH HOH A . C 3 HOH 175 433 175 HOH HOH A . C 3 HOH 176 434 176 HOH HOH A . C 3 HOH 177 435 177 HOH HOH A . C 3 HOH 178 436 178 HOH HOH A . C 3 HOH 179 437 179 HOH HOH A . C 3 HOH 180 438 180 HOH HOH A . C 3 HOH 181 439 181 HOH HOH A . C 3 HOH 182 440 182 HOH HOH A . C 3 HOH 183 441 183 HOH HOH A . C 3 HOH 184 442 184 HOH HOH A . C 3 HOH 185 443 185 HOH HOH A . C 3 HOH 186 444 186 HOH HOH A . C 3 HOH 187 445 187 HOH HOH A . C 3 HOH 188 446 188 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 PHASER . ? ? ? ? phasing ? ? ? 6 # _cell.length_a 44.997 _cell.length_b 49.137 _cell.length_c 63.556 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3BOD _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3BOD _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3BOD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl, 18% PEG 8000, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-06-08 _diffrn_detector.details Si111 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C # _reflns.entry_id 3BOD _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 30 _reflns.number_all 16011 _reflns.number_obs 15154 _reflns.percent_possible_obs 94.6 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs 0.193 _reflns_shell.meanI_over_sigI_obs 6.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.number_unique_all 1491 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BOD _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.540 _refine.ls_number_reflns_obs 15154 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.178 _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.220 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 796 _refine.B_iso_mean 16.345 _refine.aniso_B[1][1] 0.020 _refine.aniso_B[2][2] 0.000 _refine.aniso_B[3][3] -0.020 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 2.301 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1393 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 1582 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1426 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1943 1.417 1.950 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 189 6.486 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 65 40.180 24.308 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 235 11.409 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 16.620 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 215 0.102 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1105 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 624 0.217 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 984 0.310 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 158 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 5 0.136 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 62 0.235 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 28 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 1 0.151 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 921 0.877 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1448 1.404 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 570 2.350 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 490 3.497 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.890 _refine_ls_shell.number_reflns_R_work 1033 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.210 _refine_ls_shell.R_factor_R_free 0.277 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1096 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BOD _struct.title 'Structure of mouse beta-neurexin 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BOD _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;Neurexin1D, LNS6, Alternative splicing, Calcium, Cell adhesion, EGF-like domain, Glycoprotein, Membrane, Metal-binding, Transmembrane ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NRX1A_MOUSE Q9CS84 1 ;TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESN AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPA ; 1132 ? 2 UNP NRX1A_MOUSE Q9CS84 1 GRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLV 1277 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BOD A 6 ? 120 ? Q9CS84 1132 ? 1246 ? 86 200 2 2 3BOD A 121 ? 178 ? Q9CS84 1277 ? 1334 ? 201 258 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BOD ALA A 1 ? UNP Q9CS84 ? ? 'expression tag' 81 1 1 3BOD PRO A 2 ? UNP Q9CS84 ? ? 'expression tag' 82 2 1 3BOD LEU A 3 ? UNP Q9CS84 ? ? 'expression tag' 83 3 1 3BOD GLY A 4 ? UNP Q9CS84 ? ? 'expression tag' 84 4 1 3BOD SER A 5 ? UNP Q9CS84 ? ? 'expression tag' 85 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 158 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 164 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 238 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 244 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 57 OD2 ? ? A CA 1 A ASP 137 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 A VAL 74 O ? ? A CA 1 A VAL 154 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A ILE 126 O ? ? A CA 1 A ILE 206 1_555 ? ? ? ? ? ? ? 2.244 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 A ASN 128 OD1 ? ? A CA 1 A ASN 208 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 1 A HOH 330 1_555 ? ? ? ? ? ? ? 2.416 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 57 ? A ASP 137 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A VAL 74 ? A VAL 154 ? 1_555 89.2 ? 2 OD2 ? A ASP 57 ? A ASP 137 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ILE 126 ? A ILE 206 ? 1_555 82.4 ? 3 O ? A VAL 74 ? A VAL 154 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ILE 126 ? A ILE 206 ? 1_555 93.7 ? 4 OD2 ? A ASP 57 ? A ASP 137 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASN 128 ? A ASN 208 ? 1_555 87.0 ? 5 O ? A VAL 74 ? A VAL 154 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASN 128 ? A ASN 208 ? 1_555 176.1 ? 6 O ? A ILE 126 ? A ILE 206 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASN 128 ? A ASN 208 ? 1_555 84.5 ? 7 OD2 ? A ASP 57 ? A ASP 137 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? C HOH . ? A HOH 330 ? 1_555 82.7 ? 8 O ? A VAL 74 ? A VAL 154 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? C HOH . ? A HOH 330 ? 1_555 86.0 ? 9 O ? A ILE 126 ? A ILE 206 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? C HOH . ? A HOH 330 ? 1_555 165.1 ? 10 OD1 ? A ASN 128 ? A ASN 208 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? C HOH . ? A HOH 330 ? 1_555 94.8 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 79 ? GLU A 82 ? ILE A 159 GLU A 162 A 2 LYS A 67 ? ASN A 73 ? LYS A 147 ASN A 153 A 3 TYR A 58 ? HIS A 64 ? TYR A 138 HIS A 144 A 4 ALA A 44 ? SER A 51 ? ALA A 124 SER A 131 A 5 GLN A 130 ? ILE A 135 ? GLN A 210 ILE A 215 A 6 THR A 6 ? LYS A 19 ? THR A 86 LYS A 99 A 7 GLY A 146 ? TYR A 153 ? GLY A 226 TYR A 233 A 8 LEU A 156 ? LYS A 157 ? LEU A 236 LYS A 237 B 1 ILE A 115 ? ARG A 117 ? ILE A 195 ARG A 197 B 2 ASN A 104 ? VAL A 109 ? ASN A 184 VAL A 189 B 3 HIS A 94 ? SER A 101 ? HIS A 174 SER A 181 B 4 ALA A 30 ? SER A 38 ? ALA A 110 SER A 118 B 5 GLY A 146 ? TYR A 153 ? GLY A 226 TYR A 233 B 6 THR A 6 ? LYS A 19 ? THR A 86 LYS A 99 B 7 ILE A 169 ? LEU A 177 ? ILE A 249 LEU A 257 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 79 ? O ILE A 159 N PHE A 72 ? N PHE A 152 A 2 3 O LYS A 71 ? O LYS A 151 N GLU A 60 ? N GLU A 140 A 3 4 O ILE A 63 ? O ILE A 143 N ALA A 44 ? N ALA A 124 A 4 5 N ARG A 48 ? N ARG A 128 O ILE A 134 ? O ILE A 214 A 5 6 O ILE A 133 ? O ILE A 213 N TYR A 18 ? N TYR A 98 A 6 7 N PHE A 9 ? N PHE A 89 O GLY A 146 ? O GLY A 226 A 7 8 N TYR A 153 ? N TYR A 233 O LEU A 156 ? O LEU A 236 B 1 2 O ARG A 117 ? O ARG A 197 N ALA A 105 ? N ALA A 185 B 2 3 O GLN A 108 ? O GLN A 188 N ARG A 97 ? N ARG A 177 B 3 4 O PHE A 98 ? O PHE A 178 N LEU A 33 ? N LEU A 113 B 4 5 N GLY A 36 ? N GLY A 116 O SER A 149 ? O SER A 229 B 5 6 O GLY A 146 ? O GLY A 226 N PHE A 9 ? N PHE A 89 B 6 7 N THR A 17 ? N THR A 97 O ALA A 170 ? O ALA A 250 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 57 ? ASP A 137 . ? 1_555 ? 2 AC1 5 ILE A 126 ? ILE A 206 . ? 1_555 ? 3 AC1 5 ASN A 128 ? ASN A 208 . ? 1_555 ? 4 AC1 5 GLU A 139 ? GLU A 219 . ? 4_455 ? 5 AC1 5 HOH C . ? HOH A 330 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 105 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 439 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 104 ? ? -147.37 46.09 2 1 THR A 156 ? ? -89.58 -96.09 3 1 ASP A 190 ? ? 53.25 -125.14 4 1 ASP A 190 ? ? 53.25 -124.72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 ILE N N N N 148 ILE CA C N S 149 ILE C C N N 150 ILE O O N N 151 ILE CB C N S 152 ILE CG1 C N N 153 ILE CG2 C N N 154 ILE CD1 C N N 155 ILE OXT O N N 156 ILE H H N N 157 ILE H2 H N N 158 ILE HA H N N 159 ILE HB H N N 160 ILE HG12 H N N 161 ILE HG13 H N N 162 ILE HG21 H N N 163 ILE HG22 H N N 164 ILE HG23 H N N 165 ILE HD11 H N N 166 ILE HD12 H N N 167 ILE HD13 H N N 168 ILE HXT H N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 LYS N N N N 192 LYS CA C N S 193 LYS C C N N 194 LYS O O N N 195 LYS CB C N N 196 LYS CG C N N 197 LYS CD C N N 198 LYS CE C N N 199 LYS NZ N N N 200 LYS OXT O N N 201 LYS H H N N 202 LYS H2 H N N 203 LYS HA H N N 204 LYS HB2 H N N 205 LYS HB3 H N N 206 LYS HG2 H N N 207 LYS HG3 H N N 208 LYS HD2 H N N 209 LYS HD3 H N N 210 LYS HE2 H N N 211 LYS HE3 H N N 212 LYS HZ1 H N N 213 LYS HZ2 H N N 214 LYS HZ3 H N N 215 LYS HXT H N N 216 MET N N N N 217 MET CA C N S 218 MET C C N N 219 MET O O N N 220 MET CB C N N 221 MET CG C N N 222 MET SD S N N 223 MET CE C N N 224 MET OXT O N N 225 MET H H N N 226 MET H2 H N N 227 MET HA H N N 228 MET HB2 H N N 229 MET HB3 H N N 230 MET HG2 H N N 231 MET HG3 H N N 232 MET HE1 H N N 233 MET HE2 H N N 234 MET HE3 H N N 235 MET HXT H N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TRP N N N N 308 TRP CA C N S 309 TRP C C N N 310 TRP O O N N 311 TRP CB C N N 312 TRP CG C Y N 313 TRP CD1 C Y N 314 TRP CD2 C Y N 315 TRP NE1 N Y N 316 TRP CE2 C Y N 317 TRP CE3 C Y N 318 TRP CZ2 C Y N 319 TRP CZ3 C Y N 320 TRP CH2 C Y N 321 TRP OXT O N N 322 TRP H H N N 323 TRP H2 H N N 324 TRP HA H N N 325 TRP HB2 H N N 326 TRP HB3 H N N 327 TRP HD1 H N N 328 TRP HE1 H N N 329 TRP HE3 H N N 330 TRP HZ2 H N N 331 TRP HZ3 H N N 332 TRP HH2 H N N 333 TRP HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 VAL N N N N 359 VAL CA C N S 360 VAL C C N N 361 VAL O O N N 362 VAL CB C N N 363 VAL CG1 C N N 364 VAL CG2 C N N 365 VAL OXT O N N 366 VAL H H N N 367 VAL H2 H N N 368 VAL HA H N N 369 VAL HB H N N 370 VAL HG11 H N N 371 VAL HG12 H N N 372 VAL HG13 H N N 373 VAL HG21 H N N 374 VAL HG22 H N N 375 VAL HG23 H N N 376 VAL HXT H N N 377 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _atom_sites.entry_id 3BOD _atom_sites.fract_transf_matrix[1][1] 0.022224 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020351 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015734 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S # loop_