HEADER CELL ADHESION 17-DEC-07 3BOP TITLE STRUCTURE OF MOUSE BETA-NEUREXIN 2D4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-NEUREXIN 2D4; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: LNS DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NRXN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-NRX2D4 KEYWDS BETA-NEUREXIN 2D4, LNS6, LECTIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,X.JIN,L.SHAPIRO REVDAT 4 21-FEB-24 3BOP 1 SEQADV REVDAT 3 13-JUL-11 3BOP 1 VERSN REVDAT 2 24-FEB-09 3BOP 1 VERSN REVDAT 1 25-MAR-08 3BOP 0 JRNL AUTH J.KOEHNKE,X.JIN,N.TRBOVIC,P.S.KATSAMBA,J.BRASCH,G.AHLSEN, JRNL AUTH 2 P.SCHEIFFELE,B.HONIG,A.G.PALMER,L.SHAPIRO JRNL TITL CRYSTAL STRUCTURES OF BETA-NEUREXIN 1 AND BETA-NEUREXIN 2 JRNL TITL 2 ECTODOMAINS AND DYNAMICS OF SPLICE INSERTION SEQUENCE 4. JRNL REF STRUCTURE V. 16 410 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18334216 JRNL DOI 10.1016/J.STR.2007.12.024 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 10871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -2.58000 REMARK 3 B33 (A**2) : 3.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.552 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.429 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.254 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3950 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5372 ; 1.029 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 5.582 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;36.514 ;23.209 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;18.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3080 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1597 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2519 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 145 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2535 ; 0.170 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3999 ; 0.311 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1585 ; 0.359 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1373 ; 0.617 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5270 -0.4946 19.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: -0.0743 REMARK 3 T33: -0.0697 T12: -0.0569 REMARK 3 T13: 0.0031 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.1561 L22: 4.9670 REMARK 3 L33: 3.9143 L12: -0.3206 REMARK 3 L13: 1.0279 L23: -2.1170 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.1175 S13: 0.2973 REMARK 3 S21: 0.3988 S22: -0.0736 S23: -0.0863 REMARK 3 S31: -0.5016 S32: 0.1051 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3280 17.9840 35.3627 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: -0.0140 REMARK 3 T33: -0.1079 T12: -0.0212 REMARK 3 T13: 0.0395 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 6.7168 L22: 1.9075 REMARK 3 L33: 1.7085 L12: 0.9990 REMARK 3 L13: -1.4075 L23: -0.0422 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.1799 S13: -0.1197 REMARK 3 S21: -0.1396 S22: -0.0646 S23: -0.0430 REMARK 3 S31: 0.1944 S32: 0.0766 S33: 0.0732 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 86 C 260 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3821 24.3779 -4.6493 REMARK 3 T TENSOR REMARK 3 T11: -0.1049 T22: -0.0095 REMARK 3 T33: 0.0773 T12: -0.0189 REMARK 3 T13: 0.0485 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.9469 L22: 7.9170 REMARK 3 L33: 5.8795 L12: -1.3873 REMARK 3 L13: 0.7533 L23: -4.4351 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0914 S13: -0.0696 REMARK 3 S21: 0.1388 S22: 0.2071 S23: 0.8643 REMARK 3 S31: 0.1243 S32: -0.3661 S33: -0.1763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10939 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.2M (NH4)2SO4, 0.1M REMARK 280 SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.74250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.49150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.74250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.49150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 203 REMARK 465 ARG A 204 REMARK 465 GLN A 205 REMARK 465 LEU A 206 REMARK 465 THR A 207 REMARK 465 ILE A 208 REMARK 465 PHE A 209 REMARK 465 ALA B 86 REMARK 465 ALA B 202 REMARK 465 GLY B 203 REMARK 465 ARG B 204 REMARK 465 GLN B 205 REMARK 465 LEU B 206 REMARK 465 THR B 207 REMARK 465 ARG C 204 REMARK 465 GLN C 205 REMARK 465 LEU C 206 REMARK 465 THR C 207 REMARK 465 ILE C 208 REMARK 465 PHE C 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 208 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 201 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 GLY C 94 N - CA - C ANGL. DEV. = 22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 104 6.26 -56.83 REMARK 500 LEU A 128 -85.44 -103.44 REMARK 500 GLN A 147 19.33 57.79 REMARK 500 VAL A 156 73.24 -102.97 REMARK 500 ASP A 192 -121.79 46.21 REMARK 500 SER B 135 -130.42 44.66 REMARK 500 GLN B 147 56.67 36.74 REMARK 500 ASP B 192 -119.51 52.98 REMARK 500 SER B 247 33.71 73.85 REMARK 500 ASP C 192 -119.08 50.45 REMARK 500 SER C 193 51.65 -108.85 REMARK 500 ALA C 202 99.37 -65.13 REMARK 500 GLN C 222 -3.95 70.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 222 GLY B 223 148.20 REMARK 500 GLY B 223 ARG B 224 56.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BOD RELATED DB: PDB REMARK 900 STRUCTURE OF NEUREXIN 1D4 DBREF 3BOP A 87 260 UNP Q3TQ54 Q3TQ54_MOUSE 87 260 DBREF 3BOP B 87 260 UNP Q3TQ54 Q3TQ54_MOUSE 87 260 DBREF 3BOP C 87 260 UNP Q3TQ54 Q3TQ54_MOUSE 87 260 SEQADV 3BOP ALA A 86 UNP Q3TQ54 EXPRESSION TAG SEQADV 3BOP ALA B 86 UNP Q3TQ54 EXPRESSION TAG SEQADV 3BOP ALA C 86 UNP Q3TQ54 EXPRESSION TAG SEQRES 1 A 175 ALA THR THR TYR ILE PHE GLY LYS GLY GLY ALA LEU ILE SEQRES 2 A 175 THR TYR THR TRP PRO PRO ASN ASP ARG PRO SER THR ARG SEQRES 3 A 175 MET ASP ARG LEU ALA VAL GLY PHE SER THR HIS GLN ARG SEQRES 4 A 175 SER ALA VAL LEU VAL ARG VAL ASP SER ALA SER GLY LEU SEQRES 5 A 175 GLY ASP TYR LEU GLN LEU HIS ILE ASP GLN GLY THR VAL SEQRES 6 A 175 GLY VAL ILE PHE ASN VAL GLY THR ASP ASP ILE THR ILE SEQRES 7 A 175 ASP GLU PRO ASN ALA ILE VAL SER ASP GLY LYS TYR HIS SEQRES 8 A 175 VAL VAL ARG PHE THR ARG SER GLY GLY ASN ALA THR LEU SEQRES 9 A 175 GLN VAL ASP SER TRP PRO VAL ASN GLU ARG TYR PRO ALA SEQRES 10 A 175 GLY ARG GLN LEU THR ILE PHE ASN SER GLN ALA ALA ILE SEQRES 11 A 175 LYS ILE GLY GLY ARG ASP GLN GLY ARG PRO PHE GLN GLY SEQRES 12 A 175 GLN VAL SER GLY LEU TYR TYR ASN GLY LEU LYS VAL LEU SEQRES 13 A 175 ALA LEU ALA ALA GLU SER ASP PRO ASN VAL ARG THR GLU SEQRES 14 A 175 GLY HIS LEU ARG LEU VAL SEQRES 1 B 175 ALA THR THR TYR ILE PHE GLY LYS GLY GLY ALA LEU ILE SEQRES 2 B 175 THR TYR THR TRP PRO PRO ASN ASP ARG PRO SER THR ARG SEQRES 3 B 175 MET ASP ARG LEU ALA VAL GLY PHE SER THR HIS GLN ARG SEQRES 4 B 175 SER ALA VAL LEU VAL ARG VAL ASP SER ALA SER GLY LEU SEQRES 5 B 175 GLY ASP TYR LEU GLN LEU HIS ILE ASP GLN GLY THR VAL SEQRES 6 B 175 GLY VAL ILE PHE ASN VAL GLY THR ASP ASP ILE THR ILE SEQRES 7 B 175 ASP GLU PRO ASN ALA ILE VAL SER ASP GLY LYS TYR HIS SEQRES 8 B 175 VAL VAL ARG PHE THR ARG SER GLY GLY ASN ALA THR LEU SEQRES 9 B 175 GLN VAL ASP SER TRP PRO VAL ASN GLU ARG TYR PRO ALA SEQRES 10 B 175 GLY ARG GLN LEU THR ILE PHE ASN SER GLN ALA ALA ILE SEQRES 11 B 175 LYS ILE GLY GLY ARG ASP GLN GLY ARG PRO PHE GLN GLY SEQRES 12 B 175 GLN VAL SER GLY LEU TYR TYR ASN GLY LEU LYS VAL LEU SEQRES 13 B 175 ALA LEU ALA ALA GLU SER ASP PRO ASN VAL ARG THR GLU SEQRES 14 B 175 GLY HIS LEU ARG LEU VAL SEQRES 1 C 175 ALA THR THR TYR ILE PHE GLY LYS GLY GLY ALA LEU ILE SEQRES 2 C 175 THR TYR THR TRP PRO PRO ASN ASP ARG PRO SER THR ARG SEQRES 3 C 175 MET ASP ARG LEU ALA VAL GLY PHE SER THR HIS GLN ARG SEQRES 4 C 175 SER ALA VAL LEU VAL ARG VAL ASP SER ALA SER GLY LEU SEQRES 5 C 175 GLY ASP TYR LEU GLN LEU HIS ILE ASP GLN GLY THR VAL SEQRES 6 C 175 GLY VAL ILE PHE ASN VAL GLY THR ASP ASP ILE THR ILE SEQRES 7 C 175 ASP GLU PRO ASN ALA ILE VAL SER ASP GLY LYS TYR HIS SEQRES 8 C 175 VAL VAL ARG PHE THR ARG SER GLY GLY ASN ALA THR LEU SEQRES 9 C 175 GLN VAL ASP SER TRP PRO VAL ASN GLU ARG TYR PRO ALA SEQRES 10 C 175 GLY ARG GLN LEU THR ILE PHE ASN SER GLN ALA ALA ILE SEQRES 11 C 175 LYS ILE GLY GLY ARG ASP GLN GLY ARG PRO PHE GLN GLY SEQRES 12 C 175 GLN VAL SER GLY LEU TYR TYR ASN GLY LEU LYS VAL LEU SEQRES 13 C 175 ALA LEU ALA ALA GLU SER ASP PRO ASN VAL ARG THR GLU SEQRES 14 C 175 GLY HIS LEU ARG LEU VAL FORMUL 4 HOH *138(H2 O) HELIX 1 1 LYS A 239 GLU A 246 1 8 HELIX 2 2 LYS B 239 GLU B 246 1 8 HELIX 3 3 LYS C 239 GLU C 246 1 8 SHEET 1 A12 LEU A 257 LEU A 259 0 SHEET 2 A12 THR A 88 PHE A 91 -1 N ILE A 90 O ARG A 258 SHEET 3 A12 GLY A 228 TYR A 235 -1 O GLY A 228 N PHE A 91 SHEET 4 A12 ARG A 114 SER A 120 -1 N GLY A 118 O SER A 231 SHEET 5 A12 HIS A 176 SER A 183 -1 O VAL A 178 N VAL A 117 SHEET 6 A12 ASN A 186 VAL A 191 -1 O GLN A 190 N ARG A 179 SHEET 7 A12 TRP A 194 GLU A 198 -1 O VAL A 196 N LEU A 189 SHEET 8 A12 TRP C 194 GLU C 198 -1 O ASN C 197 N ASN A 197 SHEET 9 A12 ALA C 187 VAL C 191 -1 N LEU C 189 O VAL C 196 SHEET 10 A12 TYR C 175 ARG C 182 -1 N ARG C 179 O GLN C 190 SHEET 11 A12 ASP C 113 THR C 121 -1 N PHE C 119 O HIS C 176 SHEET 12 A12 TYR C 234 TYR C 235 -1 O TYR C 234 N ALA C 116 SHEET 1 B14 LEU A 257 LEU A 259 0 SHEET 2 B14 THR A 88 PHE A 91 -1 N ILE A 90 O ARG A 258 SHEET 3 B14 GLY A 228 TYR A 235 -1 O GLY A 228 N PHE A 91 SHEET 4 B14 ARG A 114 SER A 120 -1 N GLY A 118 O SER A 231 SHEET 5 B14 HIS A 176 SER A 183 -1 O VAL A 178 N VAL A 117 SHEET 6 B14 ASN A 186 VAL A 191 -1 O GLN A 190 N ARG A 179 SHEET 7 B14 TRP A 194 GLU A 198 -1 O VAL A 196 N LEU A 189 SHEET 8 B14 TRP C 194 GLU C 198 -1 O ASN C 197 N ASN A 197 SHEET 9 B14 ALA C 187 VAL C 191 -1 N LEU C 189 O VAL C 196 SHEET 10 B14 TYR C 175 ARG C 182 -1 N ARG C 179 O GLN C 190 SHEET 11 B14 ASP C 113 THR C 121 -1 N PHE C 119 O HIS C 176 SHEET 12 B14 GLY C 228 VAL C 230 -1 O GLN C 229 N SER C 120 SHEET 13 B14 THR C 88 PHE C 91 -1 N TYR C 89 O VAL C 230 SHEET 14 B14 LEU C 257 VAL C 260 -1 O VAL C 260 N THR C 88 SHEET 1 C 7 ASP A 159 GLU A 165 0 SHEET 2 C 7 THR A 149 VAL A 156 -1 N PHE A 154 O ILE A 161 SHEET 3 C 7 ASP A 139 ASP A 146 -1 N GLN A 142 O ILE A 153 SHEET 4 C 7 ALA A 126 SER A 133 -1 N VAL A 131 O LEU A 141 SHEET 5 C 7 GLN A 212 GLY A 218 -1 O LYS A 216 N ARG A 130 SHEET 6 C 7 LEU A 97 THR A 101 -1 N TYR A 100 O ILE A 215 SHEET 7 C 7 VAL A 251 GLU A 254 -1 O GLU A 254 N LEU A 97 SHEET 1 D11 ASP B 159 ILE B 169 0 SHEET 2 D11 THR B 149 VAL B 156 -1 N VAL B 152 O ILE B 163 SHEET 3 D11 ASP B 139 ASP B 146 -1 N GLN B 142 O ILE B 153 SHEET 4 D11 ALA B 126 SER B 133 -1 N VAL B 129 O LEU B 143 SHEET 5 D11 GLN B 212 GLY B 218 -1 O ALA B 214 N ASP B 132 SHEET 6 D11 THR B 88 THR B 101 -1 N ILE B 98 O ILE B 217 SHEET 7 D11 GLY B 228 TYR B 235 -1 O VAL B 230 N TYR B 89 SHEET 8 D11 ARG B 114 SER B 120 -1 N GLY B 118 O SER B 231 SHEET 9 D11 HIS B 176 SER B 183 -1 O PHE B 180 N LEU B 115 SHEET 10 D11 ASN B 186 VAL B 191 -1 O THR B 188 N THR B 181 SHEET 11 D11 TRP B 194 GLU B 198 -1 O GLU B 198 N ALA B 187 SHEET 1 E 7 ASP B 159 ILE B 169 0 SHEET 2 E 7 THR B 149 VAL B 156 -1 N VAL B 152 O ILE B 163 SHEET 3 E 7 ASP B 139 ASP B 146 -1 N GLN B 142 O ILE B 153 SHEET 4 E 7 ALA B 126 SER B 133 -1 N VAL B 129 O LEU B 143 SHEET 5 E 7 GLN B 212 GLY B 218 -1 O ALA B 214 N ASP B 132 SHEET 6 E 7 THR B 88 THR B 101 -1 N ILE B 98 O ILE B 217 SHEET 7 E 7 VAL B 251 LEU B 259 -1 O ARG B 258 N ILE B 90 SHEET 1 F 7 ASP C 159 GLU C 165 0 SHEET 2 F 7 THR C 149 VAL C 156 -1 N PHE C 154 O ILE C 161 SHEET 3 F 7 LEU C 141 ASP C 146 -1 N ASP C 146 O THR C 149 SHEET 4 F 7 ALA C 126 SER C 133 -1 N ALA C 126 O ILE C 145 SHEET 5 F 7 GLN C 212 GLY C 218 -1 O LYS C 216 N ARG C 130 SHEET 6 F 7 LEU C 97 THR C 101 -1 N ILE C 98 O ILE C 217 SHEET 7 F 7 VAL C 251 GLU C 254 -1 O ARG C 252 N THR C 99 SHEET 1 G 2 ARG C 220 ASP C 221 0 SHEET 2 G 2 ARG C 224 PRO C 225 -1 O ARG C 224 N ASP C 221 CISPEP 1 GLY A 223 ARG A 224 0 6.19 CISPEP 2 SER B 135 GLY B 136 0 2.37 CISPEP 3 GLY C 94 GLY C 95 0 1.45 CISPEP 4 GLY C 136 LEU C 137 0 -7.10 CRYST1 95.485 96.983 62.584 90.00 105.98 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010473 0.000000 0.002999 0.00000 SCALE2 0.000000 0.010311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016621 0.00000