HEADER TRANSCRIPTION REGULATOR 17-DEC-07 3BOQ TITLE CRYSTAL STRUCTURE OF MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 SILICIBACTER POMEROYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, MARR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI DSS-3; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3, DSM 15171; SOURCE 5 ATCC: 700808; SOURCE 6 GENE: SPOA0452; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS SILICIBACTER POMEROYI, TRANSCRIPTIONAL REGULATOR, MARR FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION KEYWDS 4 REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.VOLKART,L.FREEMAN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 30-OCT-24 3BOQ 1 SEQADV LINK REVDAT 3 13-JUL-11 3BOQ 1 VERSN REVDAT 2 24-FEB-09 3BOQ 1 VERSN REVDAT 1 01-JAN-08 3BOQ 0 JRNL AUTH C.CHANG,L.VOLKART,L.FREEMAN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF MARR FAMILY TRANSCRIPTIONAL REGULATOR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 18641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2061 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 59.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.11000 REMARK 3 B22 (A**2) : -3.11000 REMARK 3 B33 (A**2) : 4.66000 REMARK 3 B12 (A**2) : -1.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2113 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2845 ; 1.456 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 5.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;37.643 ;24.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;17.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1551 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 928 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1468 ; 0.288 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1431 ; 0.997 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2164 ; 1.279 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 771 ; 2.532 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 681 ; 3.585 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7589 79.7965 -9.3200 REMARK 3 T TENSOR REMARK 3 T11: -0.2319 T22: -0.2717 REMARK 3 T33: -0.2750 T12: 0.0229 REMARK 3 T13: 0.0250 T23: -0.1317 REMARK 3 L TENSOR REMARK 3 L11: 15.6828 L22: 6.5279 REMARK 3 L33: 7.5962 L12: 8.3968 REMARK 3 L13: 9.3425 L23: 4.9638 REMARK 3 S TENSOR REMARK 3 S11: -0.3701 S12: 0.7253 S13: 0.0253 REMARK 3 S21: -0.4337 S22: 0.4709 S23: -0.2657 REMARK 3 S31: -0.3444 S32: 0.3888 S33: -0.1008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8213 71.0232 10.0792 REMARK 3 T TENSOR REMARK 3 T11: -0.1382 T22: -0.1833 REMARK 3 T33: -0.1029 T12: -0.0235 REMARK 3 T13: -0.1348 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 8.9255 L22: 4.2447 REMARK 3 L33: 6.6286 L12: -0.4295 REMARK 3 L13: 3.9266 L23: -0.8832 REMARK 3 S TENSOR REMARK 3 S11: 0.2969 S12: -0.7379 S13: -0.5806 REMARK 3 S21: 0.1540 S22: -0.0719 S23: 0.0788 REMARK 3 S31: 0.3412 S32: -0.2833 S33: -0.2250 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5109 88.0255 6.5451 REMARK 3 T TENSOR REMARK 3 T11: -0.2039 T22: -0.2561 REMARK 3 T33: -0.1177 T12: -0.0335 REMARK 3 T13: -0.0636 T23: -0.2352 REMARK 3 L TENSOR REMARK 3 L11: 13.6955 L22: 12.0296 REMARK 3 L33: 12.4003 L12: -8.9703 REMARK 3 L13: 10.4495 L23: -8.7925 REMARK 3 S TENSOR REMARK 3 S11: -0.5812 S12: -0.6888 S13: 1.1484 REMARK 3 S21: 0.5483 S22: 0.2954 S23: -1.0346 REMARK 3 S31: -0.4857 S32: -0.5537 S33: 0.2858 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -31.4939 82.5808 -1.9180 REMARK 3 T TENSOR REMARK 3 T11: -0.1978 T22: -0.1406 REMARK 3 T33: -0.3626 T12: -0.0285 REMARK 3 T13: -0.0152 T23: -0.1090 REMARK 3 L TENSOR REMARK 3 L11: 5.7977 L22: 44.7697 REMARK 3 L33: 2.8861 L12: 7.8861 REMARK 3 L13: 0.5649 L23: -1.2900 REMARK 3 S TENSOR REMARK 3 S11: 0.3888 S12: -0.3753 S13: 0.3255 REMARK 3 S21: 0.7546 S22: -0.4489 S23: 0.5771 REMARK 3 S31: -0.0397 S32: -0.3332 S33: 0.0601 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3060 74.9060 -3.0375 REMARK 3 T TENSOR REMARK 3 T11: -0.2031 T22: -0.1364 REMARK 3 T33: -0.1320 T12: 0.0053 REMARK 3 T13: -0.1386 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.7247 L22: 17.2081 REMARK 3 L33: 6.3158 L12: -0.4558 REMARK 3 L13: -0.8389 L23: 7.8149 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.3768 S13: -0.1342 REMARK 3 S21: 1.0731 S22: -0.0239 S23: 0.2068 REMARK 3 S31: 0.2024 S32: -0.0079 S33: -0.0728 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8937 70.2933 -23.6312 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: -0.0032 REMARK 3 T33: 0.2156 T12: -0.0514 REMARK 3 T13: 0.0854 T23: -0.1815 REMARK 3 L TENSOR REMARK 3 L11: 8.6601 L22: 6.8614 REMARK 3 L33: 5.8305 L12: -2.2404 REMARK 3 L13: -1.3006 L23: 1.3108 REMARK 3 S TENSOR REMARK 3 S11: 0.2509 S12: 0.0955 S13: 0.8797 REMARK 3 S21: -0.5472 S22: -0.0430 S23: -0.9946 REMARK 3 S31: -0.8778 S32: 1.1376 S33: -0.2079 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6033 63.6127 -18.9127 REMARK 3 T TENSOR REMARK 3 T11: -0.2198 T22: -0.2229 REMARK 3 T33: -0.0104 T12: -0.0339 REMARK 3 T13: -0.1069 T23: -0.1536 REMARK 3 L TENSOR REMARK 3 L11: 14.3043 L22: 3.8320 REMARK 3 L33: 12.2660 L12: -4.0119 REMARK 3 L13: -11.1378 L23: 4.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.0685 S12: 0.4364 S13: -0.9724 REMARK 3 S21: -0.0901 S22: -0.1634 S23: 0.0894 REMARK 3 S31: 0.2214 S32: -0.3434 S33: 0.2319 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 131 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): -31.4228 83.2606 -10.2367 REMARK 3 T TENSOR REMARK 3 T11: -0.1565 T22: -0.2024 REMARK 3 T33: -0.3769 T12: 0.0358 REMARK 3 T13: -0.0543 T23: -0.1067 REMARK 3 L TENSOR REMARK 3 L11: 24.6695 L22: 28.2581 REMARK 3 L33: 2.5459 L12: 21.9086 REMARK 3 L13: -3.3749 L23: -3.1312 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.2377 S13: 0.7232 REMARK 3 S21: -0.5131 S22: 0.1363 S23: 0.9275 REMARK 3 S31: -0.3241 S32: -0.2791 S33: -0.1629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18667 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.98367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.96733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.47550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.45917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.49183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 MSE A 93 REMARK 465 SER A 94 REMARK 465 ALA A 95 REMARK 465 ASP A 96 REMARK 465 ASP A 97 REMARK 465 ARG A 98 REMARK 465 ARG A 99 REMARK 465 SER A 100 REMARK 465 GLN A 151 REMARK 465 THR A 152 REMARK 465 GLY A 153 REMARK 465 ALA A 154 REMARK 465 SER A 155 REMARK 465 LEU A 156 REMARK 465 ASP A 157 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 MSE B 93 REMARK 465 SER B 94 REMARK 465 ALA B 95 REMARK 465 ASP B 96 REMARK 465 ASP B 97 REMARK 465 ARG B 98 REMARK 465 ARG B 99 REMARK 465 THR B 152 REMARK 465 GLY B 153 REMARK 465 ALA B 154 REMARK 465 SER B 155 REMARK 465 LEU B 156 REMARK 465 ASP B 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 PHE A 101 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 SER B 100 OG REMARK 470 SER B 102 OG REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 75.80 -166.21 REMARK 500 THR B 40 -18.97 -140.84 REMARK 500 ASN B 73 -131.36 54.04 REMARK 500 ASN B 75 86.26 41.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88970 RELATED DB: TARGETDB DBREF 3BOQ A 1 157 UNP Q5LLB8 Q5LLB8_SILPO 1 157 DBREF 3BOQ B 1 157 UNP Q5LLB8 Q5LLB8_SILPO 1 157 SEQADV 3BOQ SER A -2 UNP Q5LLB8 EXPRESSION TAG SEQADV 3BOQ ASN A -1 UNP Q5LLB8 EXPRESSION TAG SEQADV 3BOQ ALA A 0 UNP Q5LLB8 EXPRESSION TAG SEQADV 3BOQ SER B -2 UNP Q5LLB8 EXPRESSION TAG SEQADV 3BOQ ASN B -1 UNP Q5LLB8 EXPRESSION TAG SEQADV 3BOQ ALA B 0 UNP Q5LLB8 EXPRESSION TAG SEQRES 1 A 160 SER ASN ALA MSE GLY GLU ALA ALA THR LYS SER ASP ARG SEQRES 2 A 160 GLN GLN ASN GLN THR ARG LEU TRP LEU ASN ILE LEU ARG SEQRES 3 A 160 LEU HIS GLY LEU VAL PHE GLY ASP LEU ASN ARG GLN LEU SEQRES 4 A 160 LEU ASP GLU THR GLY LEU SER LEU ALA LYS PHE ASP ALA SEQRES 5 A 160 MSE ALA GLN LEU ALA ARG ASN PRO ASP GLY LEU SER MSE SEQRES 6 A 160 GLY LYS LEU SER GLY ALA LEU LYS VAL THR ASN GLY ASN SEQRES 7 A 160 VAL SER GLY LEU VAL ASN ARG LEU ILE LYS ASP GLY MSE SEQRES 8 A 160 VAL VAL LYS ALA MSE SER ALA ASP ASP ARG ARG SER PHE SEQRES 9 A 160 SER ALA LYS LEU THR ASP ALA GLY LEU THR THR PHE LYS SEQRES 10 A 160 GLN ALA SER GLU ALA HIS ASN ARG ILE LEU ALA GLU LEU SEQRES 11 A 160 LEU ARG ALA VAL SER ASP GLN ASP MSE VAL GLU ALA SER SEQRES 12 A 160 ALA ALA LEU ARG GLY ILE LEU GLU SER MSE GLN THR GLY SEQRES 13 A 160 ALA SER LEU ASP SEQRES 1 B 160 SER ASN ALA MSE GLY GLU ALA ALA THR LYS SER ASP ARG SEQRES 2 B 160 GLN GLN ASN GLN THR ARG LEU TRP LEU ASN ILE LEU ARG SEQRES 3 B 160 LEU HIS GLY LEU VAL PHE GLY ASP LEU ASN ARG GLN LEU SEQRES 4 B 160 LEU ASP GLU THR GLY LEU SER LEU ALA LYS PHE ASP ALA SEQRES 5 B 160 MSE ALA GLN LEU ALA ARG ASN PRO ASP GLY LEU SER MSE SEQRES 6 B 160 GLY LYS LEU SER GLY ALA LEU LYS VAL THR ASN GLY ASN SEQRES 7 B 160 VAL SER GLY LEU VAL ASN ARG LEU ILE LYS ASP GLY MSE SEQRES 8 B 160 VAL VAL LYS ALA MSE SER ALA ASP ASP ARG ARG SER PHE SEQRES 9 B 160 SER ALA LYS LEU THR ASP ALA GLY LEU THR THR PHE LYS SEQRES 10 B 160 GLN ALA SER GLU ALA HIS ASN ARG ILE LEU ALA GLU LEU SEQRES 11 B 160 LEU ARG ALA VAL SER ASP GLN ASP MSE VAL GLU ALA SER SEQRES 12 B 160 ALA ALA LEU ARG GLY ILE LEU GLU SER MSE GLN THR GLY SEQRES 13 B 160 ALA SER LEU ASP MODRES 3BOQ MSE A 50 MET SELENOMETHIONINE MODRES 3BOQ MSE A 62 MET SELENOMETHIONINE MODRES 3BOQ MSE A 88 MET SELENOMETHIONINE MODRES 3BOQ MSE A 136 MET SELENOMETHIONINE MODRES 3BOQ MSE A 150 MET SELENOMETHIONINE MODRES 3BOQ MSE B 50 MET SELENOMETHIONINE MODRES 3BOQ MSE B 62 MET SELENOMETHIONINE MODRES 3BOQ MSE B 88 MET SELENOMETHIONINE MODRES 3BOQ MSE B 136 MET SELENOMETHIONINE MODRES 3BOQ MSE B 150 MET SELENOMETHIONINE HET MSE A 50 8 HET MSE A 62 8 HET MSE A 88 8 HET MSE A 136 8 HET MSE A 150 8 HET MSE B 50 8 HET MSE B 62 8 HET MSE B 88 8 HET MSE B 136 8 HET MSE B 150 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *48(H2 O) HELIX 1 1 SER A 8 GLY A 41 1 34 HELIX 2 2 SER A 43 ASN A 56 1 14 HELIX 3 3 MSE A 62 LEU A 69 1 8 HELIX 4 4 ASN A 75 ASP A 86 1 12 HELIX 5 5 THR A 106 LEU A 128 1 23 HELIX 6 6 SER A 132 MSE A 150 1 19 HELIX 7 7 SER B 8 GLY B 41 1 34 HELIX 8 8 SER B 43 ASN B 56 1 14 HELIX 9 9 MSE B 62 LEU B 69 1 8 HELIX 10 10 ASN B 75 ASP B 86 1 12 HELIX 11 11 THR B 106 LEU B 128 1 23 HELIX 12 12 SER B 132 GLN B 151 1 20 SHEET 1 A 3 LEU A 60 SER A 61 0 SHEET 2 A 3 SER A 102 LEU A 105 -1 O ALA A 103 N LEU A 60 SHEET 3 A 3 VAL A 89 LYS A 91 -1 N VAL A 90 O LYS A 104 SHEET 1 B 2 LEU B 60 SER B 61 0 SHEET 2 B 2 SER B 102 ALA B 103 -1 O ALA B 103 N LEU B 60 LINK C ALA A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ALA A 51 1555 1555 1.34 LINK C SER A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N GLY A 63 1555 1555 1.33 LINK C GLY A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N VAL A 89 1555 1555 1.34 LINK C ASP A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N VAL A 137 1555 1555 1.33 LINK C SER A 149 N MSE A 150 1555 1555 1.33 LINK C ALA B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N ALA B 51 1555 1555 1.33 LINK C SER B 61 N MSE B 62 1555 1555 1.33 LINK C MSE B 62 N GLY B 63 1555 1555 1.33 LINK C GLY B 87 N MSE B 88 1555 1555 1.34 LINK C MSE B 88 N VAL B 89 1555 1555 1.33 LINK C ASP B 135 N MSE B 136 1555 1555 1.34 LINK C MSE B 136 N VAL B 137 1555 1555 1.34 LINK C SER B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N GLN B 151 1555 1555 1.34 CRYST1 110.567 110.567 68.951 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009044 0.005222 0.000000 0.00000 SCALE2 0.000000 0.010443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014503 0.00000