HEADER TRANSCRIPTION 18-DEC-07 3BP8 TITLE CRYSTAL STRUCTURE OF MLC/EIIB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NAGC-LIKE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MLC; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PTS SYSTEM GLUCOSE-SPECIFIC EIICB COMPONENT; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: UNP RESIDUES 401-475; COMPND 10 SYNONYM: EIIB, EIICB-GLC, EII-GLC; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 STRAIN: B834(DE3); SOURCE 4 GENE: MLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PNS100; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 STRAIN: GI698; SOURCE 11 GENE: PTSG, GLCA, UMG; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PJHK KEYWDS ENZYME, IICBGLC, GLUCOSE SIGNALING, MLC, PROTEIN-PROTEIN INTERACTION, KEYWDS 2 TRANSCRIPTION REGULATION, INNER MEMBRANE, KINASE, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN, PHOSPHOTRANSFERASE SYSTEM, SUGAR TRANSPORT, KEYWDS 4 TRANSFERASE, TRANSMEMBRANE, TRANSPORT, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.AN,H.I.JUNG,S.S.CHA REVDAT 3 01-NOV-23 3BP8 1 REMARK REVDAT 2 24-FEB-09 3BP8 1 VERSN REVDAT 1 27-MAY-08 3BP8 0 JRNL AUTH T.W.NAM,H.I.JUNG,Y.J.AN,Y.H.PARK,S.H.LEE,Y.J.SEOK,S.S.CHA JRNL TITL ANALYSES OF MLC-IIBGLC INTERACTION AND A PLAUSIBLE MOLECULAR JRNL TITL 2 MECHANISM OF MLC INACTIVATION BY MEMBRANE SEQUESTRATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 3751 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18319344 JRNL DOI 10.1073/PNAS.0709295105 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.100 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 206924.270 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 17850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.58000 REMARK 3 B22 (A**2) : 4.01000 REMARK 3 B33 (A**2) : 13.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 11.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.82 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.94 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.19 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20356 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Z6R, 3BP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 6K, 0.1M MGCL2, 0.1M SODIUM REMARK 280 ACETATE, PH5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.71350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.71200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.71350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.71200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 ILE A 10 REMARK 465 ILE A 65 REMARK 465 LYS A 66 REMARK 465 GLU A 67 REMARK 465 ALA A 68 REMARK 465 GLY A 69 REMARK 465 ASN A 70 REMARK 465 ARG A 71 REMARK 465 GLY A 72 REMARK 465 ARG A 73 REMARK 465 PRO A 74 REMARK 465 ALA A 75 REMARK 465 SER A 287 REMARK 465 SER A 288 REMARK 465 MET A 289 REMARK 465 LEU A 290 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 ASN B 5 REMARK 465 GLN B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 HIS B 9 REMARK 465 ILE B 10 REMARK 465 ASP B 11 REMARK 465 GLU B 64 REMARK 465 ILE B 65 REMARK 465 LYS B 66 REMARK 465 GLU B 67 REMARK 465 ALA B 68 REMARK 465 GLY B 69 REMARK 465 ASN B 70 REMARK 465 ARG B 71 REMARK 465 GLY B 72 REMARK 465 ARG B 73 REMARK 465 PRO B 74 REMARK 465 ALA B 75 REMARK 465 GLN B 381 REMARK 465 GLY B 382 REMARK 465 THR B 383 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 11 CG OD1 OD2 REMARK 480 LEU A 42 CG CD1 CD2 REMARK 480 LYS A 49 CG CD CE NZ REMARK 480 GLU A 64 CG CD OE1 OE2 REMARK 480 GLU A 112 CG CD OE1 OE2 REMARK 480 LEU A 118 CG CD1 CD2 REMARK 480 LYS A 119 CG CD CE NZ REMARK 480 ASP A 121 CG OD1 OD2 REMARK 480 GLN A 140 CG CD OE1 NE2 REMARK 480 LYS A 141 CG CD CE NZ REMARK 480 LYS A 142 CG CD CE NZ REMARK 480 GLU A 160 CG CD OE1 OE2 REMARK 480 GLU A 171 CG CD OE1 OE2 REMARK 480 LYS A 174 CG CD CE NZ REMARK 480 HIS A 262 CG ND1 CD2 CE1 NE2 REMARK 480 MET A 286 CG SD CE REMARK 480 GLN A 293 CG CD OE1 NE2 REMARK 480 ASP A 357 CG OD1 OD2 REMARK 480 GLN A 381 CG CD OE1 NE2 REMARK 480 GLN B 12 CG CD OE1 NE2 REMARK 480 LYS B 14 CG CD CE NZ REMARK 480 ASN B 17 CG OD1 ND2 REMARK 480 LEU B 24 CG CD1 CD2 REMARK 480 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 39 CG CD1 CD2 REMARK 480 LEU B 42 CG CD1 CD2 REMARK 480 ILE B 47 CG1 CG2 CD1 REMARK 480 LYS B 49 CG CD CE NZ REMARK 480 ILE B 50 CD1 REMARK 480 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 56 CG CD OE1 OE2 REMARK 480 GLU B 81 CG CD OE1 OE2 REMARK 480 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 480 ILE B 92 CD1 REMARK 480 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 101 CG CD1 CD2 REMARK 480 GLU B 112 CG CD OE1 OE2 REMARK 480 GLU B 115 CG CD OE1 OE2 REMARK 480 LYS B 119 CG CD CE NZ REMARK 480 SER B 122 OG REMARK 480 GLN B 140 CG CD OE1 NE2 REMARK 480 LYS B 141 CG CD CE NZ REMARK 480 LYS B 142 CG CD CE NZ REMARK 480 GLU B 160 CG CD OE1 OE2 REMARK 480 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 480 PHE B 169 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU B 171 CG CD OE1 OE2 REMARK 480 LYS B 174 CG CD CE NZ REMARK 480 GLU B 180 CG CD OE1 OE2 REMARK 480 GLU B 183 CG CD OE1 OE2 REMARK 480 MET B 286 CG SD CE REMARK 480 MET B 289 CG SD CE REMARK 480 LEU B 290 CG CD1 CD2 REMARK 480 GLN B 293 CG CD OE1 NE2 REMARK 480 PRO B 335 CD REMARK 480 ASN B 380 CG OD1 ND2 REMARK 480 MET B 384 CG SD CE REMARK 480 LYS B 391 CG CD CE NZ REMARK 480 ASN B 396 CG OD1 ND2 REMARK 480 ARG B 402 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 24 CG CD CE NZ REMARK 480 ILE C 34 CG1 CG2 CD1 REMARK 480 ARG C 38 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 54 CG CD CE NZ REMARK 480 LYS C 74 CG CD CE NZ REMARK 480 ASP C 76 CG OD1 OD2 REMARK 480 ARG C 87 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 24 CG CD CE NZ REMARK 480 LEU D 30 CG CD1 CD2 REMARK 480 ARG D 38 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 54 CG CD CE NZ REMARK 480 LYS D 74 CG CD CE NZ REMARK 480 ASP D 76 CG OD1 OD2 REMARK 480 GLU D 84 CG CD OE1 OE2 REMARK 480 ARG D 87 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 -41.33 -148.33 REMARK 500 VAL A 80 152.47 -40.65 REMARK 500 ARG A 94 97.56 58.57 REMARK 500 SER A 106 8.65 85.14 REMARK 500 GLN A 114 -158.71 -110.74 REMARK 500 LEU A 116 -4.85 -159.28 REMARK 500 ALA A 117 -38.59 62.00 REMARK 500 LEU A 118 -56.48 95.38 REMARK 500 GLU A 144 -133.16 -118.89 REMARK 500 SER A 148 -178.06 -175.75 REMARK 500 PHE A 169 -49.66 84.51 REMARK 500 VAL A 173 -80.39 -113.22 REMARK 500 LYS A 174 103.62 49.01 REMARK 500 PRO A 177 44.47 -74.61 REMARK 500 THR A 186 -38.58 -134.99 REMARK 500 ALA A 208 -72.63 11.60 REMARK 500 SER A 209 44.40 -97.36 REMARK 500 ASP A 221 -129.29 -142.72 REMARK 500 ASP A 231 -35.03 65.86 REMARK 500 SER A 239 -90.82 -90.69 REMARK 500 SER A 241 63.93 13.38 REMARK 500 LEU A 242 156.61 -43.87 REMARK 500 ILE A 245 1.51 -64.42 REMARK 500 HIS A 247 64.82 -110.56 REMARK 500 GLN A 249 89.52 -47.04 REMARK 500 PRO A 252 6.66 -52.37 REMARK 500 TYR A 253 -69.47 -138.25 REMARK 500 TYR A 258 5.69 -67.94 REMARK 500 ASN A 261 -160.33 -64.88 REMARK 500 THR A 267 -12.81 -164.66 REMARK 500 LEU A 280 15.05 -57.36 REMARK 500 GLN A 284 55.19 -118.74 REMARK 500 SER A 285 162.73 72.99 REMARK 500 PRO A 294 154.46 -47.03 REMARK 500 ASN A 334 61.11 65.85 REMARK 500 ILE A 371 116.72 -172.31 REMARK 500 SER A 398 39.25 -66.02 REMARK 500 LEU A 399 -44.00 -167.48 REMARK 500 ASP B 26 -24.31 164.59 REMARK 500 GLN B 41 76.50 56.92 REMARK 500 ILE B 47 -21.96 -153.78 REMARK 500 GLU B 83 -41.53 -147.69 REMARK 500 ALA B 100 146.33 -171.43 REMARK 500 SER B 113 27.25 -152.17 REMARK 500 ALA B 117 179.72 71.92 REMARK 500 LEU B 118 -64.74 -105.91 REMARK 500 PRO B 123 -130.61 -57.80 REMARK 500 PHE B 135 -38.62 -36.62 REMARK 500 HIS B 139 41.37 -76.16 REMARK 500 ARG B 145 115.35 169.98 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 410 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 247 ND1 REMARK 620 2 CYS A 257 SG 113.5 REMARK 620 3 CYS A 259 SG 110.8 93.9 REMARK 620 4 CYS A 264 SG 109.7 124.5 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 257 SG REMARK 620 2 CYS B 259 SG 111.2 REMARK 620 3 CYS B 264 SG 126.9 117.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 407 DBREF 3BP8 A 1 406 UNP Q8X787 Q8X787_ECO57 1 406 DBREF 3BP8 B 1 406 UNP Q8X787 Q8X787_ECO57 1 406 DBREF 3BP8 C 13 87 UNP P69786 PTGCB_ECOLI 401 475 DBREF 3BP8 D 13 87 UNP P69786 PTGCB_ECOLI 401 475 SEQRES 1 A 406 MET VAL ALA GLU ASN GLN PRO GLY HIS ILE ASP GLN ILE SEQRES 2 A 406 LYS GLN THR ASN ALA GLY ALA VAL TYR ARG LEU ILE ASP SEQRES 3 A 406 GLN LEU GLY PRO VAL SER ARG ILE ASP LEU SER ARG LEU SEQRES 4 A 406 ALA GLN LEU ALA PRO ALA SER ILE THR LYS ILE VAL ARG SEQRES 5 A 406 GLU MET LEU GLU ALA HIS LEU VAL GLN GLU LEU GLU ILE SEQRES 6 A 406 LYS GLU ALA GLY ASN ARG GLY ARG PRO ALA VAL GLY LEU SEQRES 7 A 406 VAL VAL GLU THR GLU ALA TRP HIS TYR LEU SER LEU ARG SEQRES 8 A 406 ILE SER ARG GLY GLU ILE PHE LEU ALA LEU ARG ASP LEU SEQRES 9 A 406 SER SER LYS LEU VAL VAL GLU GLU SER GLN GLU LEU ALA SEQRES 10 A 406 LEU LYS ASP ASP SER PRO LEU LEU ASP ARG ILE ILE SER SEQRES 11 A 406 HIS ILE ASP GLN PHE PHE ILE ARG HIS GLN LYS LYS LEU SEQRES 12 A 406 GLU ARG LEU THR SER ILE ALA ILE THR LEU PRO GLY ILE SEQRES 13 A 406 ILE ASP THR GLU ASN GLY ILE VAL HIS ARG MET PRO PHE SEQRES 14 A 406 TYR GLU ASP VAL LYS GLU MET PRO LEU GLY GLU ALA LEU SEQRES 15 A 406 GLU GLN HIS THR GLY VAL PRO VAL TYR ILE GLN HIS ASP SEQRES 16 A 406 ILE SER ALA TRP THR MET ALA GLU ALA LEU PHE GLY ALA SEQRES 17 A 406 SER ARG GLY ALA ARG ASP VAL ILE GLN VAL VAL ILE ASP SEQRES 18 A 406 HIS ASN VAL GLY ALA GLY VAL ILE THR ASP GLY HIS LEU SEQRES 19 A 406 LEU HIS ALA GLY SER SER SER LEU VAL GLU ILE GLY HIS SEQRES 20 A 406 THR GLN VAL ASP PRO TYR GLY LYS ARG CYS TYR CYS GLY SEQRES 21 A 406 ASN HIS GLY CYS LEU GLU THR ILE ALA SER VAL ASP SER SEQRES 22 A 406 ILE LEU GLU LEU ALA GLN LEU ARG LEU ASN GLN SER MET SEQRES 23 A 406 SER SER MET LEU HIS GLY GLN PRO LEU THR VAL ASP SER SEQRES 24 A 406 LEU CYS GLN ALA ALA LEU ARG GLY ASP LEU LEU ALA LYS SEQRES 25 A 406 ASP ILE ILE THR GLY VAL GLY ALA HIS VAL GLY ARG ILE SEQRES 26 A 406 LEU ALA ILE MET VAL ASN LEU PHE ASN PRO GLN LYS ILE SEQRES 27 A 406 LEU ILE GLY SER PRO LEU SER LYS ALA ALA ASP ILE LEU SEQRES 28 A 406 PHE PRO VAL ILE SER ASP SER ILE ARG GLN GLN ALA LEU SEQRES 29 A 406 PRO ALA TYR SER GLN HIS ILE SER VAL GLU SER THR GLN SEQRES 30 A 406 PHE SER ASN GLN GLY THR MET ALA GLY ALA ALA LEU VAL SEQRES 31 A 406 LYS ASP ALA MET TYR ASN GLY SER LEU LEU ILE ARG LEU SEQRES 32 A 406 LEU GLN GLY SEQRES 1 B 406 MET VAL ALA GLU ASN GLN PRO GLY HIS ILE ASP GLN ILE SEQRES 2 B 406 LYS GLN THR ASN ALA GLY ALA VAL TYR ARG LEU ILE ASP SEQRES 3 B 406 GLN LEU GLY PRO VAL SER ARG ILE ASP LEU SER ARG LEU SEQRES 4 B 406 ALA GLN LEU ALA PRO ALA SER ILE THR LYS ILE VAL ARG SEQRES 5 B 406 GLU MET LEU GLU ALA HIS LEU VAL GLN GLU LEU GLU ILE SEQRES 6 B 406 LYS GLU ALA GLY ASN ARG GLY ARG PRO ALA VAL GLY LEU SEQRES 7 B 406 VAL VAL GLU THR GLU ALA TRP HIS TYR LEU SER LEU ARG SEQRES 8 B 406 ILE SER ARG GLY GLU ILE PHE LEU ALA LEU ARG ASP LEU SEQRES 9 B 406 SER SER LYS LEU VAL VAL GLU GLU SER GLN GLU LEU ALA SEQRES 10 B 406 LEU LYS ASP ASP SER PRO LEU LEU ASP ARG ILE ILE SER SEQRES 11 B 406 HIS ILE ASP GLN PHE PHE ILE ARG HIS GLN LYS LYS LEU SEQRES 12 B 406 GLU ARG LEU THR SER ILE ALA ILE THR LEU PRO GLY ILE SEQRES 13 B 406 ILE ASP THR GLU ASN GLY ILE VAL HIS ARG MET PRO PHE SEQRES 14 B 406 TYR GLU ASP VAL LYS GLU MET PRO LEU GLY GLU ALA LEU SEQRES 15 B 406 GLU GLN HIS THR GLY VAL PRO VAL TYR ILE GLN HIS ASP SEQRES 16 B 406 ILE SER ALA TRP THR MET ALA GLU ALA LEU PHE GLY ALA SEQRES 17 B 406 SER ARG GLY ALA ARG ASP VAL ILE GLN VAL VAL ILE ASP SEQRES 18 B 406 HIS ASN VAL GLY ALA GLY VAL ILE THR ASP GLY HIS LEU SEQRES 19 B 406 LEU HIS ALA GLY SER SER SER LEU VAL GLU ILE GLY HIS SEQRES 20 B 406 THR GLN VAL ASP PRO TYR GLY LYS ARG CYS TYR CYS GLY SEQRES 21 B 406 ASN HIS GLY CYS LEU GLU THR ILE ALA SER VAL ASP SER SEQRES 22 B 406 ILE LEU GLU LEU ALA GLN LEU ARG LEU ASN GLN SER MET SEQRES 23 B 406 SER SER MET LEU HIS GLY GLN PRO LEU THR VAL ASP SER SEQRES 24 B 406 LEU CYS GLN ALA ALA LEU ARG GLY ASP LEU LEU ALA LYS SEQRES 25 B 406 ASP ILE ILE THR GLY VAL GLY ALA HIS VAL GLY ARG ILE SEQRES 26 B 406 LEU ALA ILE MET VAL ASN LEU PHE ASN PRO GLN LYS ILE SEQRES 27 B 406 LEU ILE GLY SER PRO LEU SER LYS ALA ALA ASP ILE LEU SEQRES 28 B 406 PHE PRO VAL ILE SER ASP SER ILE ARG GLN GLN ALA LEU SEQRES 29 B 406 PRO ALA TYR SER GLN HIS ILE SER VAL GLU SER THR GLN SEQRES 30 B 406 PHE SER ASN GLN GLY THR MET ALA GLY ALA ALA LEU VAL SEQRES 31 B 406 LYS ASP ALA MET TYR ASN GLY SER LEU LEU ILE ARG LEU SEQRES 32 B 406 LEU GLN GLY SEQRES 1 C 75 MET ALA PRO ALA LEU VAL ALA ALA PHE GLY GLY LYS GLU SEQRES 2 C 75 ASN ILE THR ASN LEU ASP ALA CYS ILE THR ARG LEU ARG SEQRES 3 C 75 VAL SER VAL ALA ASP VAL SER LYS VAL ASP GLN ALA GLY SEQRES 4 C 75 LEU LYS LYS LEU GLY ALA ALA GLY VAL VAL VAL ALA GLY SEQRES 5 C 75 SER GLY VAL GLN ALA ILE PHE GLY THR LYS SER ASP ASN SEQRES 6 C 75 LEU LYS THR GLU MET ASP GLU TYR ILE ARG SEQRES 1 D 75 MET ALA PRO ALA LEU VAL ALA ALA PHE GLY GLY LYS GLU SEQRES 2 D 75 ASN ILE THR ASN LEU ASP ALA CYS ILE THR ARG LEU ARG SEQRES 3 D 75 VAL SER VAL ALA ASP VAL SER LYS VAL ASP GLN ALA GLY SEQRES 4 D 75 LEU LYS LYS LEU GLY ALA ALA GLY VAL VAL VAL ALA GLY SEQRES 5 D 75 SER GLY VAL GLN ALA ILE PHE GLY THR LYS SER ASP ASN SEQRES 6 D 75 LEU LYS THR GLU MET ASP GLU TYR ILE ARG HET ACT A 407 4 HET ACT A 408 4 HET ACT A 409 4 HET ZN A 410 1 HET ZN B 407 1 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 ZN 2(ZN 2+) HELIX 1 1 ILE A 13 LEU A 28 1 16 HELIX 2 2 SER A 32 ALA A 40 1 9 HELIX 3 3 ALA A 43 ALA A 57 1 15 HELIX 4 4 PRO A 123 HIS A 139 1 17 HELIX 5 5 GLU A 180 HIS A 185 1 6 HELIX 6 6 ASP A 195 PHE A 206 1 12 HELIX 7 7 GLU A 244 THR A 248 5 5 HELIX 8 8 SER A 270 LEU A 280 1 11 HELIX 9 9 THR A 296 GLY A 307 1 12 HELIX 10 10 ASP A 308 ASN A 334 1 27 HELIX 11 11 SER A 342 LYS A 346 5 5 HELIX 12 12 ALA A 347 ALA A 363 1 17 HELIX 13 13 LEU A 364 GLN A 369 1 6 HELIX 14 14 GLY A 382 ALA A 385 5 4 HELIX 15 15 GLY A 386 ASN A 396 1 11 HELIX 16 16 LEU A 399 LEU A 404 1 6 HELIX 17 17 GLN B 12 ILE B 25 1 14 HELIX 18 18 SER B 32 ALA B 40 1 9 HELIX 19 19 THR B 48 GLU B 56 1 9 HELIX 20 20 LEU B 124 HIS B 139 1 16 HELIX 21 21 PRO B 177 HIS B 185 1 9 HELIX 22 22 HIS B 194 PHE B 206 1 13 HELIX 23 23 GLU B 244 THR B 248 5 5 HELIX 24 24 CYS B 264 ALA B 269 1 6 HELIX 25 25 SER B 270 ASN B 283 1 14 HELIX 26 26 THR B 296 LEU B 305 1 10 HELIX 27 27 ASP B 308 ASN B 334 1 27 HELIX 28 28 SER B 342 ALA B 348 5 7 HELIX 29 29 LEU B 351 GLN B 362 1 12 HELIX 30 30 LEU B 364 GLN B 369 1 6 HELIX 31 31 ALA B 387 ASN B 396 1 10 HELIX 32 32 GLY B 397 GLN B 405 1 9 HELIX 33 33 MET C 13 PHE C 21 1 9 HELIX 34 34 ASP C 43 VAL C 47 5 5 HELIX 35 35 ASP C 48 GLY C 56 1 9 HELIX 36 36 LYS C 74 ILE C 86 1 13 HELIX 37 37 VAL D 18 GLY D 22 5 5 HELIX 38 38 ASP D 43 VAL D 47 5 5 HELIX 39 39 ASP D 48 LYS D 54 1 7 HELIX 40 40 THR D 73 TYR D 85 1 13 SHEET 1 A 2 VAL A 60 GLU A 62 0 SHEET 2 A 2 LEU A 78 VAL A 80 -1 O VAL A 79 N GLN A 61 SHEET 1 B 5 LEU A 108 GLU A 115 0 SHEET 2 B 5 GLU A 96 ASP A 103 -1 N ILE A 97 O GLN A 114 SHEET 3 B 5 TRP A 85 ILE A 92 -1 N TYR A 87 O ARG A 102 SHEET 4 B 5 ARG A 145 LEU A 153 1 O ALA A 150 N LEU A 88 SHEET 5 B 5 VAL A 190 HIS A 194 1 O TYR A 191 N ILE A 151 SHEET 1 C 2 ILE A 156 ASP A 158 0 SHEET 2 C 2 ILE A 163 ARG A 166 -1 O ILE A 163 N ASP A 158 SHEET 1 D 5 HIS A 233 LEU A 234 0 SHEET 2 D 5 VAL A 224 THR A 230 -1 N THR A 230 O HIS A 233 SHEET 3 D 5 VAL A 215 ILE A 220 -1 N VAL A 219 O GLY A 225 SHEET 4 D 5 LYS A 337 GLY A 341 1 O GLY A 341 N VAL A 218 SHEET 5 D 5 VAL A 373 SER A 375 1 O GLU A 374 N ILE A 338 SHEET 1 E 2 VAL B 60 GLU B 62 0 SHEET 2 E 2 LEU B 78 VAL B 80 -1 O VAL B 79 N GLN B 61 SHEET 1 F 5 LEU B 108 GLU B 111 0 SHEET 2 F 5 ILE B 97 ARG B 102 -1 N LEU B 101 O VAL B 109 SHEET 3 F 5 HIS B 86 ILE B 92 -1 N SER B 89 O ALA B 100 SHEET 4 F 5 LEU B 146 THR B 152 1 O ALA B 150 N LEU B 88 SHEET 5 F 5 VAL B 190 GLN B 193 1 O TYR B 191 N ILE B 151 SHEET 1 G 5 HIS B 233 LEU B 234 0 SHEET 2 G 5 VAL B 224 THR B 230 -1 N THR B 230 O HIS B 233 SHEET 3 G 5 VAL B 215 ILE B 220 -1 N VAL B 215 O ILE B 229 SHEET 4 G 5 LYS B 337 GLY B 341 1 O LEU B 339 N ILE B 216 SHEET 5 G 5 VAL B 373 SER B 375 1 O GLU B 374 N ILE B 338 SHEET 1 H 4 ILE C 27 LEU C 30 0 SHEET 2 H 4 LEU C 37 VAL C 41 -1 O SER C 40 N ASN C 29 SHEET 3 H 4 GLY C 66 ALA C 69 -1 O ALA C 69 N LEU C 37 SHEET 4 H 4 VAL C 60 ALA C 63 -1 N VAL C 61 O GLN C 68 SHEET 1 I 4 ILE D 27 ASN D 29 0 SHEET 2 I 4 ARG D 38 VAL D 41 -1 O SER D 40 N ASN D 29 SHEET 3 I 4 GLY D 66 ALA D 69 -1 O VAL D 67 N VAL D 39 SHEET 4 I 4 VAL D 60 ALA D 63 -1 N VAL D 61 O GLN D 68 LINK ND1 HIS A 247 ZN ZN A 410 1555 1555 2.06 LINK SG CYS A 257 ZN ZN A 410 1555 1555 2.02 LINK SG CYS A 259 ZN ZN A 410 1555 1555 2.42 LINK SG CYS A 264 ZN ZN A 410 1555 1555 2.28 LINK SG CYS B 257 ZN ZN B 407 1555 1555 2.32 LINK SG CYS B 259 ZN ZN B 407 1555 1555 2.23 LINK SG CYS B 264 ZN ZN B 407 1555 1555 1.97 CISPEP 1 GLY A 29 PRO A 30 0 0.12 CISPEP 2 GLY B 29 PRO B 30 0 0.03 SITE 1 AC1 3 LEU A 234 HIS A 236 THR B 230 SITE 1 AC2 2 ASP A 349 ASP B 251 SITE 1 AC3 4 HIS A 247 CYS A 257 CYS A 259 CYS A 264 SITE 1 AC4 4 HIS B 247 CYS B 257 CYS B 259 CYS B 264 CRYST1 201.427 55.424 82.460 90.00 95.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004965 0.000000 0.000460 0.00000 SCALE2 0.000000 0.018043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012179 0.00000