data_3BPY # _entry.id 3BPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BPY NDB PD1061 RCSB RCSB045821 WWPDB D_1000045821 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-12-29 _pdbx_database_PDB_obs_spr.pdb_id 3L2C _pdbx_database_PDB_obs_spr.replace_pdb_id 3BPY _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.entry_id 3BPY _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-19 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boura, E.' 1 'Silhan, J.' 2 'Sulc, M.' 3 'Brynda, J.' 4 'Obsilova, V.' 5 'Obsil, T.' 6 # _citation.id primary _citation.title 'Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Boura, E.' 1 primary 'Silhan, J.' 2 primary 'Sulc, M.' 3 primary 'Brynda, J.' 4 primary 'Obsilova, V.' 5 primary 'Obsil, T.' 6 # _cell.length_a 40.810 _cell.length_b 71.700 _cell.length_c 131.860 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3BPY _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3BPY _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FOXO consensus binding sequence, plus strand' 3943.613 1 ? ? ? ? 2 polymer syn 'FOXO consensus binding sequence, minus strand' 3996.619 1 ? ? ? ? 3 polymer man 'Forkhead transcription factor FOXO4, DNA binding domain' 9882.120 1 ? ? 'DNA binding domain' ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 163 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Forkhead box protein O4; Fork head domain transcription factor AFX1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DT)(DG)(DT)(DA)(DA)(DA)(DC)(DA)(DA)(DC)' CTATGTAAACAAC B ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DG)(DT)(DT)(DT)(DA)(DC)(DA)(DT)(DA)(DG)' GTTGTTTACATAG C ? 3 'polypeptide(L)' no no ;RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSS WWMLN ; ;RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSS WWMLN ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 DT n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DA n 1 9 DA n 1 10 DC n 1 11 DA n 1 12 DA n 1 13 DC n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DG n 2 5 DT n 2 6 DT n 2 7 DT n 2 8 DA n 2 9 DC n 2 10 DA n 2 11 DT n 2 12 DA n 2 13 DG n 3 1 ARG n 3 2 ARG n 3 3 ASN n 3 4 ALA n 3 5 TRP n 3 6 GLY n 3 7 ASN n 3 8 GLN n 3 9 SER n 3 10 TYR n 3 11 ALA n 3 12 GLU n 3 13 LEU n 3 14 ILE n 3 15 SER n 3 16 GLN n 3 17 ALA n 3 18 ILE n 3 19 GLU n 3 20 SER n 3 21 ALA n 3 22 PRO n 3 23 GLU n 3 24 LYS n 3 25 ARG n 3 26 LEU n 3 27 THR n 3 28 LEU n 3 29 ALA n 3 30 GLN n 3 31 ILE n 3 32 TYR n 3 33 GLU n 3 34 TRP n 3 35 MET n 3 36 VAL n 3 37 ARG n 3 38 THR n 3 39 VAL n 3 40 PRO n 3 41 TYR n 3 42 PHE n 3 43 LYS n 3 44 ASP n 3 45 LYS n 3 46 GLY n 3 47 ASP n 3 48 SER n 3 49 ASN n 3 50 SER n 3 51 SER n 3 52 ALA n 3 53 GLY n 3 54 TRP n 3 55 LYS n 3 56 ASN n 3 57 SER n 3 58 ILE n 3 59 ARG n 3 60 HIS n 3 61 ASN n 3 62 LEU n 3 63 SER n 3 64 LEU n 3 65 HIS n 3 66 SER n 3 67 LYS n 3 68 PHE n 3 69 ILE n 3 70 LYS n 3 71 VAL n 3 72 HIS n 3 73 ASN n 3 74 GLU n 3 75 ALA n 3 76 THR n 3 77 GLY n 3 78 LYS n 3 79 SER n 3 80 SER n 3 81 TRP n 3 82 TRP n 3 83 MET n 3 84 LEU n 3 85 ASN n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'FOXO4, AFX, AFX1, MLLT7' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 3 UNP FOXO4_HUMAN P98177 97 ;RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSS WWMLN ; ? 2 1 PDB 3BPY 3BPY 1 ? ? 3 2 PDB 3BPY 3BPY 1 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BPY A 1 ? 85 ? P98177 97 ? 181 ? 93 177 2 2 3BPY B 1 ? 13 ? 3BPY 1 ? 13 ? 1 13 3 3 3BPY C 1 ? 13 ? 3BPY 1 ? 13 ? 25 37 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BPY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details 'HEPES, MgCl2, PEG MME, pH 7.3, vapor diffusion, hanging drop, temperature 292K, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 ? HEPES ? ? ? 1 2 ? MgCl2 ? ? ? 1 3 ? 'PEG MME' ? ? ? 1 4 ? HEPES ? ? ? 1 5 ? MgCl2 ? ? ? 1 6 ? 'PEG MME' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type OTHER _diffrn_detector.pdbx_collection_date 2007-11-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator MIRROR _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3BPY _reflns.d_resolution_high 1.868 _reflns.d_resolution_low 65.938 _reflns.number_obs 16135 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_netI_over_sigmaI 12.200 _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 96.600 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 1 _reflns.number_all 16689 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.868 _reflns_shell.d_res_low 1.960 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 12693 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.251 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_Rsym_value 0.251 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 6.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1953 _reflns_shell.percent_possible_all 81.60 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BPY _refine.ls_d_res_high 1.868 _refine.ls_d_res_low 19.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.790 _refine.ls_number_reflns_obs 16083 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.228 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 807 _refine.B_iso_mean 21.875 _refine.aniso_B[1][1] -0.410 _refine.aniso_B[2][2] 0.170 _refine.aniso_B[3][3] 0.240 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.pdbx_overall_ESU_R 0.140 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 2.524 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 697 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 1389 _refine_hist.d_res_high 1.868 _refine_hist.d_res_low 19.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1306 0.013 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1874 1.924 2.431 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 84 1.592 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35 22.784 23.429 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 126 6.870 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 8.219 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 200 0.109 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 807 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 478 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 820 0.300 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 140 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 2 0.039 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 38 0.164 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 437 1.234 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 675 1.874 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1164 2.009 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1199 2.829 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.868 _refine_ls_shell.d_res_low 1.916 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.210 _refine_ls_shell.number_reflns_R_work 997 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.R_factor_R_free 0.251 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1042 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BPY _struct.title 'Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA' _struct.pdbx_descriptor 'Forkhead transcription factor FOXO4, DNA binding domain/DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BPY _struct_keywords.text 'forkhead, forkhead box, winged helix, TRANSCRIPTION-DNA COMPLEX' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 9 ? ALA C 21 ? SER A 101 ALA A 113 1 ? 13 HELX_P HELX_P2 2 THR C 27 ? VAL C 39 ? THR A 119 VAL A 131 1 ? 13 HELX_P HELX_P3 3 PRO C 40 ? LYS C 43 ? PRO A 132 LYS A 135 5 ? 4 HELX_P HELX_P4 4 ALA C 52 ? HIS C 65 ? ALA A 144 HIS A 157 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B DT 11 OP1 ? ? ? 1_555 D MG . MG ? ? C DT 35 C MG 2 1_555 ? ? ? ? ? ? ? 2.072 ? metalc2 metalc ? ? C LEU 62 O ? ? ? 1_555 E MG . MG ? ? A LEU 154 A MG 1 1_555 ? ? ? ? ? ? ? 2.426 ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? C MG 2 C HOH 70 1_555 ? ? ? ? ? ? ? 2.156 ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? C MG 2 C HOH 72 1_555 ? ? ? ? ? ? ? 2.233 ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? C MG 2 C HOH 71 1_555 ? ? ? ? ? ? ? 1.935 ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? C MG 2 C HOH 74 1_555 ? ? ? ? ? ? ? 2.035 ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? C MG 2 C HOH 73 1_555 ? ? ? ? ? ? ? 1.988 ? metalc8 metalc ? ? C PHE 68 O ? ? ? 1_555 E MG . MG ? ? A PHE 160 A MG 1 1_555 ? ? ? ? ? ? ? 2.555 ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1 C HOH 60 1_555 ? ? ? ? ? ? ? 2.663 ? metalc10 metalc ? ? C HIS 65 O ? ? ? 1_555 E MG . MG ? ? A HIS 157 A MG 1 1_555 ? ? ? ? ? ? ? 2.799 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 13 N1 ? ? B DC 1 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 13 O6 ? ? B DC 1 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 13 N2 ? ? B DC 1 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 2 C DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 2 C DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 3 C DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 3 C DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 4 C DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 4 C DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 5 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 5 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 5 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 6 C DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 6 C DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 7 C DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 7 C DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 8 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 8 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 9 C DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 9 C DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 10 C DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 10 C DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 10 C DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 11 C DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 11 C DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 12 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 12 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 13 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 13 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 13 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE C 68 ? VAL C 71 ? PHE A 160 VAL A 163 A 2 TRP C 81 ? LEU C 84 ? TRP A 173 LEU A 176 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 71 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 163 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TRP _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 81 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TRP _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 173 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG C 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LEU C 62 ? LEU A 154 . ? 1_555 ? 2 AC1 5 SER C 63 ? SER A 155 . ? 1_555 ? 3 AC1 5 HIS C 65 ? HIS A 157 . ? 1_555 ? 4 AC1 5 PHE C 68 ? PHE A 160 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH C 60 . ? 1_555 ? 6 AC2 6 DT B 11 ? DT C 35 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH C 70 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH C 71 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH C 72 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH C 73 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH C 74 . ? 1_555 ? # _atom_sites.entry_id 3BPY _atom_sites.fract_transf_matrix[1][1] 0.024504 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013947 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007584 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C B . n A 1 2 DT 2 2 2 DT T B . n A 1 3 DA 3 3 3 DA A B . n A 1 4 DT 4 4 4 DT T B . n A 1 5 DG 5 5 5 DG G B . n A 1 6 DT 6 6 6 DT T B . n A 1 7 DA 7 7 7 DA A B . n A 1 8 DA 8 8 8 DA A B . n A 1 9 DA 9 9 9 DA A B . n A 1 10 DC 10 10 10 DC C B . n A 1 11 DA 11 11 11 DA A B . n A 1 12 DA 12 12 12 DA A B . n A 1 13 DC 13 13 13 DC C B . n B 2 1 DG 1 25 25 DG G C . n B 2 2 DT 2 26 26 DT T C . n B 2 3 DT 3 27 27 DT T C . n B 2 4 DG 4 28 28 DG G C . n B 2 5 DT 5 29 29 DT T C . n B 2 6 DT 6 30 30 DT T C . n B 2 7 DT 7 31 31 DT T C . n B 2 8 DA 8 32 32 DA A C . n B 2 9 DC 9 33 33 DC C C . n B 2 10 DA 10 34 34 DA A C . n B 2 11 DT 11 35 35 DT T C . n B 2 12 DA 12 36 36 DA A C . n B 2 13 DG 13 37 37 DG G C . n C 3 1 ARG 1 93 93 ARG ARG A . n C 3 2 ARG 2 94 94 ARG ARG A . n C 3 3 ASN 3 95 95 ASN ASN A . n C 3 4 ALA 4 96 96 ALA ALA A . n C 3 5 TRP 5 97 97 TRP TRP A . n C 3 6 GLY 6 98 98 GLY GLY A . n C 3 7 ASN 7 99 99 ASN ASN A . n C 3 8 GLN 8 100 100 GLN GLN A . n C 3 9 SER 9 101 101 SER SER A . n C 3 10 TYR 10 102 102 TYR TYR A . n C 3 11 ALA 11 103 103 ALA ALA A . n C 3 12 GLU 12 104 104 GLU GLU A . n C 3 13 LEU 13 105 105 LEU LEU A . n C 3 14 ILE 14 106 106 ILE ILE A . n C 3 15 SER 15 107 107 SER SER A . n C 3 16 GLN 16 108 108 GLN GLN A . n C 3 17 ALA 17 109 109 ALA ALA A . n C 3 18 ILE 18 110 110 ILE ILE A . n C 3 19 GLU 19 111 111 GLU GLU A . n C 3 20 SER 20 112 112 SER SER A . n C 3 21 ALA 21 113 113 ALA ALA A . n C 3 22 PRO 22 114 114 PRO PRO A . n C 3 23 GLU 23 115 115 GLU GLU A . n C 3 24 LYS 24 116 116 LYS LYS A . n C 3 25 ARG 25 117 117 ARG ARG A . n C 3 26 LEU 26 118 118 LEU LEU A . n C 3 27 THR 27 119 119 THR THR A . n C 3 28 LEU 28 120 120 LEU LEU A . n C 3 29 ALA 29 121 121 ALA ALA A . n C 3 30 GLN 30 122 122 GLN GLN A . n C 3 31 ILE 31 123 123 ILE ILE A . n C 3 32 TYR 32 124 124 TYR TYR A . n C 3 33 GLU 33 125 125 GLU GLU A . n C 3 34 TRP 34 126 126 TRP TRP A . n C 3 35 MET 35 127 127 MET MET A . n C 3 36 VAL 36 128 128 VAL VAL A . n C 3 37 ARG 37 129 129 ARG ARG A . n C 3 38 THR 38 130 130 THR THR A . n C 3 39 VAL 39 131 131 VAL VAL A . n C 3 40 PRO 40 132 132 PRO PRO A . n C 3 41 TYR 41 133 133 TYR TYR A . n C 3 42 PHE 42 134 134 PHE PHE A . n C 3 43 LYS 43 135 135 LYS LYS A . n C 3 44 ASP 44 136 136 ASP ASP A . n C 3 45 LYS 45 137 137 LYS LYS A . n C 3 46 GLY 46 138 138 GLY GLY A . n C 3 47 ASP 47 139 139 ASP ASP A . n C 3 48 SER 48 140 140 SER SER A . n C 3 49 ASN 49 141 141 ASN ASN A . n C 3 50 SER 50 142 142 SER SER A . n C 3 51 SER 51 143 143 SER SER A . n C 3 52 ALA 52 144 144 ALA ALA A . n C 3 53 GLY 53 145 145 GLY GLY A . n C 3 54 TRP 54 146 146 TRP TRP A . n C 3 55 LYS 55 147 147 LYS LYS A . n C 3 56 ASN 56 148 148 ASN ASN A . n C 3 57 SER 57 149 149 SER SER A . n C 3 58 ILE 58 150 150 ILE ILE A . n C 3 59 ARG 59 151 151 ARG ARG A . n C 3 60 HIS 60 152 152 HIS HIS A . n C 3 61 ASN 61 153 153 ASN ASN A . n C 3 62 LEU 62 154 154 LEU LEU A . n C 3 63 SER 63 155 155 SER SER A . n C 3 64 LEU 64 156 156 LEU LEU A . n C 3 65 HIS 65 157 157 HIS HIS A . n C 3 66 SER 66 158 158 SER SER A . n C 3 67 LYS 67 159 159 LYS LYS A . n C 3 68 PHE 68 160 160 PHE PHE A . n C 3 69 ILE 69 161 161 ILE ILE A . n C 3 70 LYS 70 162 162 LYS LYS A . n C 3 71 VAL 71 163 163 VAL VAL A . n C 3 72 HIS 72 164 164 HIS HIS A . n C 3 73 ASN 73 165 165 ASN ASN A . n C 3 74 GLU 74 166 166 GLU GLU A . n C 3 75 ALA 75 167 167 ALA ALA A . n C 3 76 THR 76 168 168 THR THR A . n C 3 77 GLY 77 169 169 GLY GLY A . n C 3 78 LYS 78 170 170 LYS LYS A . n C 3 79 SER 79 171 171 SER SER A . n C 3 80 SER 80 172 172 SER SER A . n C 3 81 TRP 81 173 173 TRP TRP A . n C 3 82 TRP 82 174 174 TRP TRP A . n C 3 83 MET 83 175 175 MET MET A . n C 3 84 LEU 84 176 176 LEU LEU A . n C 3 85 ASN 85 177 177 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 2 2 MG MG C . E 4 MG 1 1 1 MG MG A . F 5 HOH 1 14 2 HOH HOH B . F 5 HOH 2 15 4 HOH HOH B . F 5 HOH 3 16 5 HOH HOH B . F 5 HOH 4 17 10 HOH HOH B . F 5 HOH 5 18 16 HOH HOH B . F 5 HOH 6 19 18 HOH HOH B . F 5 HOH 7 20 29 HOH HOH B . F 5 HOH 8 21 30 HOH HOH B . F 5 HOH 9 22 31 HOH HOH B . F 5 HOH 10 23 37 HOH HOH B . F 5 HOH 11 24 38 HOH HOH B . F 5 HOH 12 25 40 HOH HOH B . F 5 HOH 13 26 41 HOH HOH B . F 5 HOH 14 27 42 HOH HOH B . F 5 HOH 15 28 43 HOH HOH B . F 5 HOH 16 29 48 HOH HOH B . F 5 HOH 17 30 52 HOH HOH B . F 5 HOH 18 31 54 HOH HOH B . F 5 HOH 19 32 56 HOH HOH B . F 5 HOH 20 33 58 HOH HOH B . F 5 HOH 21 34 63 HOH HOH B . F 5 HOH 22 35 67 HOH HOH B . F 5 HOH 23 36 77 HOH HOH B . F 5 HOH 24 37 79 HOH HOH B . F 5 HOH 25 38 85 HOH HOH B . F 5 HOH 26 39 90 HOH HOH B . F 5 HOH 27 40 102 HOH HOH B . F 5 HOH 28 41 103 HOH HOH B . F 5 HOH 29 42 104 HOH HOH B . F 5 HOH 30 43 106 HOH HOH B . F 5 HOH 31 44 109 HOH HOH B . F 5 HOH 32 45 110 HOH HOH B . F 5 HOH 33 46 112 HOH HOH B . F 5 HOH 34 47 116 HOH HOH B . F 5 HOH 35 48 125 HOH HOH B . F 5 HOH 36 49 128 HOH HOH B . F 5 HOH 37 50 133 HOH HOH B . F 5 HOH 38 51 141 HOH HOH B . F 5 HOH 39 52 144 HOH HOH B . F 5 HOH 40 53 149 HOH HOH B . F 5 HOH 41 54 158 HOH HOH B . F 5 HOH 42 55 159 HOH HOH B . F 5 HOH 43 56 161 HOH HOH B . F 5 HOH 44 57 164 HOH HOH B . F 5 HOH 45 58 165 HOH HOH B . F 5 HOH 46 59 171 HOH HOH B . F 5 HOH 47 60 172 HOH HOH B . F 5 HOH 48 61 176 HOH HOH B . F 5 HOH 49 62 180 HOH HOH B . F 5 HOH 50 63 182 HOH HOH B . F 5 HOH 51 64 186 HOH HOH B . G 5 HOH 1 38 1 HOH HOH C . G 5 HOH 2 39 11 HOH HOH C . G 5 HOH 3 40 25 HOH HOH C . G 5 HOH 4 41 28 HOH HOH C . G 5 HOH 5 42 39 HOH HOH C . G 5 HOH 6 43 44 HOH HOH C . G 5 HOH 7 44 53 HOH HOH C . G 5 HOH 8 45 59 HOH HOH C . G 5 HOH 9 46 64 HOH HOH C . G 5 HOH 10 47 65 HOH HOH C . G 5 HOH 11 48 66 HOH HOH C . G 5 HOH 12 49 68 HOH HOH C . G 5 HOH 13 50 70 HOH HOH C . G 5 HOH 14 51 75 HOH HOH C . G 5 HOH 15 52 80 HOH HOH C . G 5 HOH 16 53 86 HOH HOH C . G 5 HOH 17 54 88 HOH HOH C . G 5 HOH 18 55 89 HOH HOH C . G 5 HOH 19 56 92 HOH HOH C . G 5 HOH 20 57 107 HOH HOH C . G 5 HOH 21 58 108 HOH HOH C . G 5 HOH 22 59 114 HOH HOH C . G 5 HOH 23 60 117 HOH HOH C . G 5 HOH 24 61 126 HOH HOH C . G 5 HOH 25 62 127 HOH HOH C . G 5 HOH 26 63 137 HOH HOH C . G 5 HOH 27 64 140 HOH HOH C . G 5 HOH 28 65 143 HOH HOH C . G 5 HOH 29 66 146 HOH HOH C . G 5 HOH 30 67 151 HOH HOH C . G 5 HOH 31 68 157 HOH HOH C . G 5 HOH 32 69 183 HOH HOH C . G 5 HOH 33 70 190 HOH HOH C . G 5 HOH 34 71 191 HOH HOH C . G 5 HOH 35 72 192 HOH HOH C . G 5 HOH 36 73 193 HOH HOH C . G 5 HOH 37 74 194 HOH HOH C . G 5 HOH 38 75 195 HOH HOH C . H 5 HOH 1 178 3 HOH HOH A . H 5 HOH 2 179 7 HOH HOH A . H 5 HOH 3 180 8 HOH HOH A . H 5 HOH 4 181 13 HOH HOH A . H 5 HOH 5 182 14 HOH HOH A . H 5 HOH 6 183 15 HOH HOH A . H 5 HOH 7 184 17 HOH HOH A . H 5 HOH 8 185 19 HOH HOH A . H 5 HOH 9 186 20 HOH HOH A . H 5 HOH 10 187 21 HOH HOH A . H 5 HOH 11 188 22 HOH HOH A . H 5 HOH 12 189 23 HOH HOH A . H 5 HOH 13 190 24 HOH HOH A . H 5 HOH 14 191 26 HOH HOH A . H 5 HOH 15 192 27 HOH HOH A . H 5 HOH 16 193 32 HOH HOH A . H 5 HOH 17 194 33 HOH HOH A . H 5 HOH 18 195 34 HOH HOH A . H 5 HOH 19 196 35 HOH HOH A . H 5 HOH 20 197 36 HOH HOH A . H 5 HOH 21 198 45 HOH HOH A . H 5 HOH 22 199 46 HOH HOH A . H 5 HOH 23 200 47 HOH HOH A . H 5 HOH 24 201 49 HOH HOH A . H 5 HOH 25 202 50 HOH HOH A . H 5 HOH 26 203 51 HOH HOH A . H 5 HOH 27 204 55 HOH HOH A . H 5 HOH 28 205 57 HOH HOH A . H 5 HOH 29 206 60 HOH HOH A . H 5 HOH 30 207 61 HOH HOH A . H 5 HOH 31 208 62 HOH HOH A . H 5 HOH 32 209 69 HOH HOH A . H 5 HOH 33 210 71 HOH HOH A . H 5 HOH 34 211 72 HOH HOH A . H 5 HOH 35 212 73 HOH HOH A . H 5 HOH 36 213 74 HOH HOH A . H 5 HOH 37 214 78 HOH HOH A . H 5 HOH 38 215 81 HOH HOH A . H 5 HOH 39 216 82 HOH HOH A . H 5 HOH 40 217 84 HOH HOH A . H 5 HOH 41 218 87 HOH HOH A . H 5 HOH 42 219 91 HOH HOH A . H 5 HOH 43 220 94 HOH HOH A . H 5 HOH 44 221 95 HOH HOH A . H 5 HOH 45 222 96 HOH HOH A . H 5 HOH 46 223 98 HOH HOH A . H 5 HOH 47 224 99 HOH HOH A . H 5 HOH 48 225 100 HOH HOH A . H 5 HOH 49 226 101 HOH HOH A . H 5 HOH 50 227 105 HOH HOH A . H 5 HOH 51 228 111 HOH HOH A . H 5 HOH 52 229 115 HOH HOH A . H 5 HOH 53 230 119 HOH HOH A . H 5 HOH 54 231 120 HOH HOH A . H 5 HOH 55 232 121 HOH HOH A . H 5 HOH 56 233 129 HOH HOH A . H 5 HOH 57 234 131 HOH HOH A . H 5 HOH 58 235 142 HOH HOH A . H 5 HOH 59 236 145 HOH HOH A . H 5 HOH 60 237 148 HOH HOH A . H 5 HOH 61 238 153 HOH HOH A . H 5 HOH 62 239 160 HOH HOH A . H 5 HOH 63 240 166 HOH HOH A . H 5 HOH 64 241 167 HOH HOH A . H 5 HOH 65 242 168 HOH HOH A . H 5 HOH 66 243 169 HOH HOH A . H 5 HOH 67 244 173 HOH HOH A . H 5 HOH 68 245 174 HOH HOH A . H 5 HOH 69 246 178 HOH HOH A . H 5 HOH 70 247 179 HOH HOH A . H 5 HOH 71 248 181 HOH HOH A . H 5 HOH 72 249 189 HOH HOH A . H 5 HOH 73 250 9 HOH HOH A . H 5 HOH 74 251 12 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DT 11 ? C DT 35 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 70 ? 1_555 87.1 ? 2 OP1 ? B DT 11 ? C DT 35 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 72 ? 1_555 93.3 ? 3 O ? G HOH . ? C HOH 70 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 72 ? 1_555 82.9 ? 4 OP1 ? B DT 11 ? C DT 35 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 71 ? 1_555 84.9 ? 5 O ? G HOH . ? C HOH 70 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 71 ? 1_555 94.6 ? 6 O ? G HOH . ? C HOH 72 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 71 ? 1_555 176.9 ? 7 OP1 ? B DT 11 ? C DT 35 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 74 ? 1_555 176.1 ? 8 O ? G HOH . ? C HOH 70 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 74 ? 1_555 89.4 ? 9 O ? G HOH . ? C HOH 72 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 74 ? 1_555 88.2 ? 10 O ? G HOH . ? C HOH 71 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 74 ? 1_555 93.5 ? 11 OP1 ? B DT 11 ? C DT 35 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 73 ? 1_555 88.9 ? 12 O ? G HOH . ? C HOH 70 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 73 ? 1_555 174.7 ? 13 O ? G HOH . ? C HOH 72 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 73 ? 1_555 93.8 ? 14 O ? G HOH . ? C HOH 71 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 73 ? 1_555 88.6 ? 15 O ? G HOH . ? C HOH 74 ? 1_555 MG ? D MG . ? C MG 2 ? 1_555 O ? G HOH . ? C HOH 73 ? 1_555 94.6 ? 16 O ? C LEU 62 ? A LEU 154 ? 1_555 MG ? E MG . ? A MG 1 ? 1_555 O ? C PHE 68 ? A PHE 160 ? 1_555 107.2 ? 17 O ? C LEU 62 ? A LEU 154 ? 1_555 MG ? E MG . ? A MG 1 ? 1_555 O ? G HOH . ? C HOH 60 ? 1_555 93.8 ? 18 O ? C PHE 68 ? A PHE 160 ? 1_555 MG ? E MG . ? A MG 1 ? 1_555 O ? G HOH . ? C HOH 60 ? 1_555 107.6 ? 19 O ? C LEU 62 ? A LEU 154 ? 1_555 MG ? E MG . ? A MG 1 ? 1_555 O ? C HIS 65 ? A HIS 157 ? 1_555 86.9 ? 20 O ? C PHE 68 ? A PHE 160 ? 1_555 MG ? E MG . ? A MG 1 ? 1_555 O ? C HIS 65 ? A HIS 157 ? 1_555 83.1 ? 21 O ? G HOH . ? C HOH 60 ? 1_555 MG ? E MG . ? A MG 1 ? 1_555 O ? C HIS 65 ? A HIS 157 ? 1_555 168.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-22 2 'Structure model' 1 1 2009-12-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_phasing_MR.entry_id 3BPY _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.040 _pdbx_phasing_MR.d_res_low_rotation 35.470 _pdbx_phasing_MR.d_res_high_translation 2.040 _pdbx_phasing_MR.d_res_low_translation 35.470 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data processing' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 MOLREP . ? other 'A. Vagin' alexei@ysbl.york.ac.uk 'molecular replacement' http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 REFMAC5 . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 SCALA . ? ? ? ? 'data scaling' ? ? ? 7 MOLREP . ? ? ? ? phasing ? ? ? 8 REFMAC 5.2 ? ? ? ? refinement ? ? ? 9 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DA 11 ? ? "C3'" B DA 11 ? ? 1.375 1.419 -0.044 0.006 N 2 1 "O3'" C DC 33 ? ? "C3'" C DC 33 ? ? 1.378 1.419 -0.041 0.006 N 3 1 "O3'" C DT 35 ? ? "C3'" C DT 35 ? ? 1.370 1.419 -0.049 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 103.46 108.00 -4.54 0.70 N 2 1 "C1'" B DC 10 ? ? "O4'" B DC 10 ? ? "C4'" B DC 10 ? ? 104.04 110.10 -6.06 1.00 N 3 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.57 108.30 2.27 0.30 N 4 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 112.63 108.30 4.33 0.30 N 5 1 "O4'" C DG 25 ? ? "C1'" C DG 25 ? ? N9 C DG 25 ? ? 111.85 108.30 3.55 0.30 N 6 1 "C1'" C DG 28 ? ? "O4'" C DG 28 ? ? "C4'" C DG 28 ? ? 103.66 110.10 -6.44 1.00 N 7 1 "O4'" C DT 30 ? ? "C4'" C DT 30 ? ? "C3'" C DT 30 ? ? 100.73 104.50 -3.77 0.40 N 8 1 "C1'" C DT 30 ? ? "O4'" C DT 30 ? ? "C4'" C DT 30 ? ? 103.34 110.10 -6.76 1.00 N 9 1 "O4'" C DC 33 ? ? "C1'" C DC 33 ? ? N1 C DC 33 ? ? 110.71 108.30 2.41 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 168 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -29.90 _pdbx_validate_torsion.psi -54.43 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BPY 'double helix' 3BPY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 13 1_555 0.170 -0.134 0.354 -4.443 -1.543 -1.479 1 B_DC1:DG37_C B 1 ? C 37 ? 19 1 1 A DT 2 1_555 B DA 12 1_555 -0.082 -0.136 0.112 -0.095 -7.024 1.883 2 B_DT2:DA36_C B 2 ? C 36 ? 20 1 1 A DA 3 1_555 B DT 11 1_555 -0.132 -0.222 -0.138 -5.057 -9.405 -1.397 3 B_DA3:DT35_C B 3 ? C 35 ? 20 1 1 A DT 4 1_555 B DA 10 1_555 -0.028 -0.237 0.084 4.340 -9.210 3.077 4 B_DT4:DA34_C B 4 ? C 34 ? 20 1 1 A DG 5 1_555 B DC 9 1_555 -0.253 -0.186 -0.046 -4.228 -10.819 0.411 5 B_DG5:DC33_C B 5 ? C 33 ? 19 1 1 A DT 6 1_555 B DA 8 1_555 0.056 -0.188 0.085 -0.153 -9.590 3.394 6 B_DT6:DA32_C B 6 ? C 32 ? 20 1 1 A DA 7 1_555 B DT 7 1_555 0.047 -0.142 -0.203 -4.615 -7.512 -1.669 7 B_DA7:DT31_C B 7 ? C 31 ? 20 1 1 A DA 8 1_555 B DT 6 1_555 0.013 -0.156 0.242 8.276 -16.243 4.843 8 B_DA8:DT30_C B 8 ? C 30 ? 20 1 1 A DA 9 1_555 B DT 5 1_555 0.022 -0.142 0.018 1.926 -13.332 -0.534 9 B_DA9:DT29_C B 9 ? C 29 ? 20 1 1 A DC 10 1_555 B DG 4 1_555 0.199 -0.168 -0.031 8.100 -11.394 1.447 10 B_DC10:DG28_C B 10 ? C 28 ? 19 1 1 A DA 11 1_555 B DT 3 1_555 -0.013 -0.176 0.031 3.483 -13.043 3.198 11 B_DA11:DT27_C B 11 ? C 27 ? 20 1 1 A DA 12 1_555 B DT 2 1_555 0.105 -0.154 0.283 10.643 -11.386 1.456 12 B_DA12:DT26_C B 12 ? C 26 ? 20 1 1 A DC 13 1_555 B DG 1 1_555 0.241 -0.120 -0.009 6.341 -7.861 1.444 13 B_DC13:DG25_C B 13 ? C 25 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 13 1_555 A DT 2 1_555 B DA 12 1_555 -0.430 -0.441 3.157 1.096 -1.208 30.558 -0.604 1.024 3.154 -2.290 -2.077 30.601 1 BB_DC1DT2:DA36DG37_CC B 1 ? C 37 ? B 2 ? C 36 ? 1 A DT 2 1_555 B DA 12 1_555 A DA 3 1_555 B DT 11 1_555 0.124 0.217 3.390 2.191 4.286 38.851 -0.211 0.089 3.395 6.414 -3.278 39.137 2 BB_DT2DA3:DT35DA36_CC B 2 ? C 36 ? B 3 ? C 35 ? 1 A DA 3 1_555 B DT 11 1_555 A DT 4 1_555 B DA 10 1_555 0.496 -0.567 3.058 -3.058 3.034 26.887 -1.902 -1.757 2.904 6.472 6.523 27.224 3 BB_DA3DT4:DA34DT35_CC B 3 ? C 35 ? B 4 ? C 34 ? 1 A DT 4 1_555 B DA 10 1_555 A DG 5 1_555 B DC 9 1_555 0.017 -0.299 3.403 2.563 9.414 37.441 -1.646 0.300 3.231 14.369 -3.912 38.648 4 BB_DT4DG5:DC33DA34_CC B 4 ? C 34 ? B 5 ? C 33 ? 1 A DG 5 1_555 B DC 9 1_555 A DT 6 1_555 B DA 8 1_555 -0.010 -0.619 3.164 -0.837 1.371 30.432 -1.442 -0.141 3.133 2.610 1.593 30.474 5 BB_DG5DT6:DA32DC33_CC B 5 ? C 33 ? B 6 ? C 32 ? 1 A DT 6 1_555 B DA 8 1_555 A DA 7 1_555 B DT 7 1_555 -0.281 -0.806 3.293 1.680 7.922 31.749 -2.764 0.781 2.992 14.194 -3.010 32.739 6 BB_DT6DA7:DT31DA32_CC B 6 ? C 32 ? B 7 ? C 31 ? 1 A DA 7 1_555 B DT 7 1_555 A DA 8 1_555 B DT 6 1_555 0.679 -0.371 2.935 -2.384 4.567 31.280 -1.421 -1.631 2.796 8.398 4.384 31.691 7 BB_DA7DA8:DT30DT31_CC B 7 ? C 31 ? B 8 ? C 30 ? 1 A DA 8 1_555 B DT 6 1_555 A DA 9 1_555 B DT 5 1_555 -1.227 -0.247 3.335 -1.602 0.802 36.467 -0.509 1.731 3.378 1.281 2.558 36.510 8 BB_DA8DA9:DT29DT30_CC B 8 ? C 30 ? B 9 ? C 29 ? 1 A DA 9 1_555 B DT 5 1_555 A DC 10 1_555 B DG 4 1_555 0.522 -0.672 3.095 -1.113 5.249 28.139 -2.457 -1.289 2.902 10.673 2.263 28.636 9 BB_DA9DC10:DG28DT29_CC B 9 ? C 29 ? B 10 ? C 28 ? 1 A DC 10 1_555 B DG 4 1_555 A DA 11 1_555 B DT 3 1_555 -0.664 -0.445 3.309 -1.632 10.203 32.282 -2.406 0.877 3.061 17.790 2.846 33.854 10 BB_DC10DA11:DT27DG28_CC B 10 ? C 28 ? B 11 ? C 27 ? 1 A DA 11 1_555 B DT 3 1_555 A DA 12 1_555 B DT 2 1_555 0.312 -0.410 3.053 -1.002 -0.616 32.289 -0.634 -0.727 3.049 -1.108 1.801 32.310 11 BB_DA11DA12:DT26DT27_CC B 11 ? C 27 ? B 12 ? C 26 ? 1 A DA 12 1_555 B DT 2 1_555 A DC 13 1_555 B DG 1 1_555 0.653 -0.897 3.391 1.940 -0.823 33.645 -1.407 -0.796 3.442 -1.420 -3.348 33.709 12 BB_DA12DC13:DG25DT26_CC B 12 ? C 26 ? B 13 ? C 25 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH #