HEADER TRANSFERASE/DNA 19-DEC-07 3BQ0 TITLE PRE-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV, DBH; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DG)-3'); COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*DT*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'); COMPND 15 CHAIN: T; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 2285; SOURCE 4 GENE: DBH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLR(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKKT7; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, Y-FAMILY, LESION BYPASS, SINGLE-BASE DELETION, -1 KEYWDS 2 FRAMESHIFT, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, KEYWDS 3 DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR KEYWDS 4 PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE/DNA, KEYWDS 5 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.PATA,R.C.WILSON REVDAT 5 30-AUG-23 3BQ0 1 REMARK REVDAT 4 25-OCT-17 3BQ0 1 SOURCE REMARK REVDAT 3 13-JUL-11 3BQ0 1 VERSN REVDAT 2 24-FEB-09 3BQ0 1 VERSN REVDAT 1 08-APR-08 3BQ0 0 JRNL AUTH R.C.WILSON,J.D.PATA JRNL TITL STRUCTURAL INSIGHTS INTO THE GENERATION OF SINGLE-BASE JRNL TITL 2 DELETIONS BY THE Y FAMILY DNA POLYMERASE DBH. JRNL REF MOL.CELL V. 29 767 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18374650 JRNL DOI 10.1016/J.MOLCEL.2008.01.014 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 13125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 679 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2704 REMARK 3 NUCLEIC ACID ATOMS : 462 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.07000 REMARK 3 B22 (A**2) : 3.07000 REMARK 3 B33 (A**2) : -6.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 9.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3259 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4489 ; 1.246 ; 2.172 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 5.532 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;39.560 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;18.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 521 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2221 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1543 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2150 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.311 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 0.398 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2760 ; 0.698 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1849 ; 0.859 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1729 ; 1.466 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3602 21.7902 -14.5178 REMARK 3 T TENSOR REMARK 3 T11: -0.2761 T22: -0.1548 REMARK 3 T33: -0.1770 T12: 0.2083 REMARK 3 T13: -0.0064 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.6406 L22: 1.6048 REMARK 3 L33: 6.7841 L12: -0.7985 REMARK 3 L13: 2.9885 L23: -0.9587 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.1665 S13: 0.0792 REMARK 3 S21: 0.0941 S22: 0.1154 S23: -0.1651 REMARK 3 S31: -0.1961 S32: -0.0867 S33: -0.0303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6739 5.6701 5.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.4218 T22: 0.2582 REMARK 3 T33: 0.3723 T12: 0.1085 REMARK 3 T13: 0.1258 T23: -0.1029 REMARK 3 L TENSOR REMARK 3 L11: 3.2942 L22: 3.1867 REMARK 3 L33: 2.5527 L12: 0.7350 REMARK 3 L13: -1.3622 L23: -0.8591 REMARK 3 S TENSOR REMARK 3 S11: -0.5642 S12: 0.4422 S13: -1.2118 REMARK 3 S21: 0.5615 S22: 0.2834 S23: 0.5895 REMARK 3 S31: 1.1664 S32: -0.6348 S33: 0.2808 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2809 -4.5618 -25.6681 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: -0.0887 REMARK 3 T33: 0.1923 T12: 0.0096 REMARK 3 T13: 0.0516 T23: -0.1082 REMARK 3 L TENSOR REMARK 3 L11: 7.2591 L22: 14.6837 REMARK 3 L33: 30.3723 L12: 5.0031 REMARK 3 L13: 6.5047 L23: 17.9860 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.5177 S13: -0.6866 REMARK 3 S21: 0.3911 S22: 1.0223 S23: -1.0953 REMARK 3 S31: 1.8759 S32: 0.7688 S33: -0.9966 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 10 REMARK 3 RESIDUE RANGE : T 2 T 14 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8331 -4.9383 -14.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.5603 T22: 0.0314 REMARK 3 T33: 0.3104 T12: 0.1968 REMARK 3 T13: -0.2428 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 6.2679 L22: 11.7536 REMARK 3 L33: 4.4257 L12: -1.4424 REMARK 3 L13: -1.6265 L23: 0.5702 REMARK 3 S TENSOR REMARK 3 S11: 0.3425 S12: 0.8546 S13: 0.7875 REMARK 3 S21: -0.9029 S22: -0.5736 S23: 1.0504 REMARK 3 S31: -0.3454 S32: -0.4552 S33: 0.2311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1IM4 AND 1K1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-3350, CALCIUM ACETATE, GLYCEROL, REMARK 280 HEPES, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.13700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.70800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.70800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.06850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.70800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.70800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.20550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.70800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.70800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.06850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.70800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.70800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.20550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.13700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 36 REMARK 465 THR A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 345 REMARK 465 THR A 346 REMARK 465 ASN A 347 REMARK 465 LEU A 348 REMARK 465 SER A 349 REMARK 465 ASP A 350 REMARK 465 PHE A 351 REMARK 465 PHE A 352 REMARK 465 ASP A 353 REMARK 465 ILE A 354 REMARK 465 DT T 1 REMARK 465 DC T 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT T 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 320 CZ ARG A 320 NH1 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 320 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA P 2 C3' - C2' - C1' ANGL. DEV. = -8.7 DEGREES REMARK 500 DA P 2 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC P 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG P 7 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG P 8 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC P 9 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC P 9 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT T 2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC T 7 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 171 11.35 -144.03 REMARK 500 GLU A 236 119.96 -29.56 REMARK 500 ASN A 278 84.71 58.06 REMARK 500 LEU A 293 36.11 72.17 REMARK 500 HIS A 304 -150.45 -101.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 355 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BQ1 RELATED DB: PDB REMARK 900 INSERTION TERNARY COMPLEX OF DBH REMARK 900 RELATED ID: 3BQ2 RELATED DB: PDB REMARK 900 POST-INSERTION BINARY COMPLEX OF DBH DBREF 3BQ0 A 1 354 UNP Q4JB80 DPO4_SULAC 1 354 DBREF 3BQ0 P 1 10 PDB 3BQ0 3BQ0 1 10 DBREF 3BQ0 T 1 15 PDB 3BQ0 3BQ0 1 15 SEQRES 1 A 354 MET ILE VAL ILE PHE VAL ASP PHE ASP TYR PHE PHE ALA SEQRES 2 A 354 GLN VAL GLU GLU VAL LEU ASN PRO GLN TYR LYS GLY LYS SEQRES 3 A 354 PRO LEU VAL VAL CYS VAL TYR SER GLY ARG THR LYS THR SEQRES 4 A 354 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 354 LEU GLY VAL LYS ALA GLY MET PRO ILE ILE LYS ALA MET SEQRES 6 A 354 GLN ILE ALA PRO SER ALA ILE TYR VAL PRO MET ARG LYS SEQRES 7 A 354 PRO ILE TYR GLU ALA PHE SER ASN ARG ILE MET ASN LEU SEQRES 8 A 354 LEU ASN LYS HIS ALA ASP LYS ILE GLU VAL ALA SER ILE SEQRES 9 A 354 ASP GLU ALA TYR LEU ASP VAL THR ASN LYS VAL GLU GLY SEQRES 10 A 354 ASN PHE GLU ASN GLY ILE GLU LEU ALA ARG LYS ILE LYS SEQRES 11 A 354 GLN GLU ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL SEQRES 12 A 354 GLY VAL ALA PRO ASN LYS ILE LEU ALA LYS ILE ILE ALA SEQRES 13 A 354 ASP LYS SER LYS PRO ASN GLY LEU GLY VAL ILE ARG PRO SEQRES 14 A 354 THR GLU VAL GLN ASP PHE LEU ASN GLU LEU ASP ILE ASP SEQRES 15 A 354 GLU ILE PRO GLY ILE GLY SER VAL LEU ALA ARG ARG LEU SEQRES 16 A 354 ASN GLU LEU GLY ILE GLN LYS LEU ARG ASP ILE LEU SER SEQRES 17 A 354 LYS ASN TYR ASN GLU LEU GLU LYS ILE THR GLY LYS ALA SEQRES 18 A 354 LYS ALA LEU TYR LEU LEU LYS LEU ALA GLN ASN LYS TYR SEQRES 19 A 354 SER GLU PRO VAL GLU ASN LYS SER LYS ILE PRO HIS GLY SEQRES 20 A 354 ARG TYR LEU THR LEU PRO TYR ASN THR ARG ASP VAL LYS SEQRES 21 A 354 VAL ILE LEU PRO TYR LEU LYS LYS ALA ILE ASN GLU ALA SEQRES 22 A 354 TYR ASN LYS VAL ASN GLY ILE PRO MET ARG ILE THR VAL SEQRES 23 A 354 ILE ALA ILE MET GLU ASP LEU ASP ILE LEU SER LYS GLY SEQRES 24 A 354 LYS LYS PHE LYS HIS GLY ILE SER ILE ASP ASN ALA TYR SEQRES 25 A 354 LYS VAL ALA GLU ASP LEU LEU ARG GLU LEU LEU VAL ARG SEQRES 26 A 354 ASP LYS ARG ARG ASN VAL ARG ARG ILE GLY VAL LYS LEU SEQRES 27 A 354 ASP ASN ILE ILE ILE ASN LYS THR ASN LEU SER ASP PHE SEQRES 28 A 354 PHE ASP ILE SEQRES 1 P 10 DG DA DA DG DC DC DG DG DC DG SEQRES 1 T 15 DT DT DC DC DG DC DC DC DG DG DC DT DT SEQRES 2 T 15 DC DC HET CA A 355 1 HETNAM CA CALCIUM ION FORMUL 4 CA CA 2+ FORMUL 5 HOH *110(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LEU A 53 1 7 HELIX 4 4 PRO A 60 ALA A 68 1 9 HELIX 5 5 ARG A 77 LYS A 94 1 18 HELIX 6 6 ASN A 118 LYS A 138 1 21 HELIX 7 7 ASN A 148 LYS A 158 1 11 HELIX 8 8 ARG A 168 THR A 170 5 3 HELIX 9 9 GLU A 171 LEU A 179 1 9 HELIX 10 10 GLY A 188 ASN A 196 1 9 HELIX 11 11 LYS A 202 LYS A 209 5 8 HELIX 12 12 ASN A 210 GLY A 219 1 10 HELIX 13 13 GLY A 219 GLN A 231 1 13 HELIX 14 14 ASP A 258 ASN A 275 1 18 HELIX 15 15 SER A 307 LEU A 323 1 17 SHEET 1 A 8 LEU A 164 VAL A 166 0 SHEET 2 A 8 VAL A 141 ALA A 146 1 N VAL A 145 O GLY A 165 SHEET 3 A 8 VAL A 3 PHE A 8 -1 N PHE A 5 O GLY A 144 SHEET 4 A 8 GLU A 106 ASP A 110 -1 O ALA A 107 N VAL A 6 SHEET 5 A 8 LYS A 98 SER A 103 -1 N LYS A 98 O ASP A 110 SHEET 6 A 8 LYS A 241 SER A 242 1 O LYS A 241 N VAL A 101 SHEET 7 A 8 VAL A 331 ILE A 342 -1 O ILE A 341 N SER A 242 SHEET 8 A 8 HIS A 246 THR A 256 -1 N HIS A 246 O LEU A 338 SHEET 1 B 9 LEU A 164 VAL A 166 0 SHEET 2 B 9 VAL A 141 ALA A 146 1 N VAL A 145 O GLY A 165 SHEET 3 B 9 VAL A 3 PHE A 8 -1 N PHE A 5 O GLY A 144 SHEET 4 B 9 GLU A 106 ASP A 110 -1 O ALA A 107 N VAL A 6 SHEET 5 B 9 LYS A 98 SER A 103 -1 N LYS A 98 O ASP A 110 SHEET 6 B 9 LYS A 241 SER A 242 1 O LYS A 241 N VAL A 101 SHEET 7 B 9 VAL A 331 ILE A 342 -1 O ILE A 341 N SER A 242 SHEET 8 B 9 ILE A 280 MET A 290 -1 N ILE A 287 O GLY A 335 SHEET 9 B 9 ILE A 295 LYS A 301 -1 O LYS A 298 N VAL A 286 SHEET 1 C 3 ALA A 42 ALA A 46 0 SHEET 2 C 3 LEU A 28 VAL A 32 -1 N VAL A 30 O THR A 45 SHEET 3 C 3 ILE A 72 PRO A 75 1 O ILE A 72 N VAL A 29 LINK CA CA A 355 O HOH P 11 1555 1555 2.11 CISPEP 1 LYS A 160 PRO A 161 0 -3.43 SITE 1 AC1 1 HOH P 11 CRYST1 119.416 119.416 68.274 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014647 0.00000