data_3BQ1 # _entry.id 3BQ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BQ1 pdb_00003bq1 10.2210/pdb3bq1/pdb NDB PD1064 ? ? RCSB RCSB045824 ? ? WWPDB D_1000045824 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BQ0 'Pre-insertion binary complex of Dbh' unspecified PDB 3BQ2 'Post-insertion binary complex of Dbh' unspecified # _pdbx_database_status.entry_id 3BQ1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pata, J.D.' 1 'Wilson, R.C.' 2 # _citation.id primary _citation.title 'Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 29 _citation.page_first 767 _citation.page_last 779 _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18374650 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2008.01.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilson, R.C.' 1 ? primary 'Pata, J.D.' 2 ? # _cell.length_a 124.96 _cell.length_b 124.96 _cell.length_c 70.21 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3BQ1 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3BQ1 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DG)-3') ; 3095.031 1 ? ? ? primer 2 polymer syn ;DNA (5'-D(*DT*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3') ; 4472.885 1 ? ? ? template 3 polymer man 'DNA polymerase IV' 40045.836 1 2.7.7.7 ? ? ? 4 non-polymer syn "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" 491.182 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Pol IV, Dbh' # _entity_name_sys.entity_id 3 _entity_name_sys.name 2.7.7.7 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DG)(DC)(DC)(DG)(DG)(DC)(DG)' GAAGCCGGCG P ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DC)(DG)(DG)(DC)(DT)(DT)(DC)(DC)' TTCCGCCCGGCTTCC T ? 3 'polypeptide(L)' no no ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DG n 1 9 DC n 1 10 DG n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DG n 2 11 DC n 2 12 DT n 2 13 DT n 2 14 DC n 2 15 DC n 3 1 MET n 3 2 ILE n 3 3 VAL n 3 4 ILE n 3 5 PHE n 3 6 VAL n 3 7 ASP n 3 8 PHE n 3 9 ASP n 3 10 TYR n 3 11 PHE n 3 12 PHE n 3 13 ALA n 3 14 GLN n 3 15 VAL n 3 16 GLU n 3 17 GLU n 3 18 VAL n 3 19 LEU n 3 20 ASN n 3 21 PRO n 3 22 GLN n 3 23 TYR n 3 24 LYS n 3 25 GLY n 3 26 LYS n 3 27 PRO n 3 28 LEU n 3 29 VAL n 3 30 VAL n 3 31 CYS n 3 32 VAL n 3 33 TYR n 3 34 SER n 3 35 GLY n 3 36 ARG n 3 37 THR n 3 38 LYS n 3 39 THR n 3 40 SER n 3 41 GLY n 3 42 ALA n 3 43 VAL n 3 44 ALA n 3 45 THR n 3 46 ALA n 3 47 ASN n 3 48 TYR n 3 49 GLU n 3 50 ALA n 3 51 ARG n 3 52 LYS n 3 53 LEU n 3 54 GLY n 3 55 VAL n 3 56 LYS n 3 57 ALA n 3 58 GLY n 3 59 MET n 3 60 PRO n 3 61 ILE n 3 62 ILE n 3 63 LYS n 3 64 ALA n 3 65 MET n 3 66 GLN n 3 67 ILE n 3 68 ALA n 3 69 PRO n 3 70 SER n 3 71 ALA n 3 72 ILE n 3 73 TYR n 3 74 VAL n 3 75 PRO n 3 76 MET n 3 77 ARG n 3 78 LYS n 3 79 PRO n 3 80 ILE n 3 81 TYR n 3 82 GLU n 3 83 ALA n 3 84 PHE n 3 85 SER n 3 86 ASN n 3 87 ARG n 3 88 ILE n 3 89 MET n 3 90 ASN n 3 91 LEU n 3 92 LEU n 3 93 ASN n 3 94 LYS n 3 95 HIS n 3 96 ALA n 3 97 ASP n 3 98 LYS n 3 99 ILE n 3 100 GLU n 3 101 VAL n 3 102 ALA n 3 103 SER n 3 104 ILE n 3 105 ASP n 3 106 GLU n 3 107 ALA n 3 108 TYR n 3 109 LEU n 3 110 ASP n 3 111 VAL n 3 112 THR n 3 113 ASN n 3 114 LYS n 3 115 VAL n 3 116 GLU n 3 117 GLY n 3 118 ASN n 3 119 PHE n 3 120 GLU n 3 121 ASN n 3 122 GLY n 3 123 ILE n 3 124 GLU n 3 125 LEU n 3 126 ALA n 3 127 ARG n 3 128 LYS n 3 129 ILE n 3 130 LYS n 3 131 GLN n 3 132 GLU n 3 133 ILE n 3 134 LEU n 3 135 GLU n 3 136 LYS n 3 137 GLU n 3 138 LYS n 3 139 ILE n 3 140 THR n 3 141 VAL n 3 142 THR n 3 143 VAL n 3 144 GLY n 3 145 VAL n 3 146 ALA n 3 147 PRO n 3 148 ASN n 3 149 LYS n 3 150 ILE n 3 151 LEU n 3 152 ALA n 3 153 LYS n 3 154 ILE n 3 155 ILE n 3 156 ALA n 3 157 ASP n 3 158 LYS n 3 159 SER n 3 160 LYS n 3 161 PRO n 3 162 ASN n 3 163 GLY n 3 164 LEU n 3 165 GLY n 3 166 VAL n 3 167 ILE n 3 168 ARG n 3 169 PRO n 3 170 THR n 3 171 GLU n 3 172 VAL n 3 173 GLN n 3 174 ASP n 3 175 PHE n 3 176 LEU n 3 177 ASN n 3 178 GLU n 3 179 LEU n 3 180 ASP n 3 181 ILE n 3 182 ASP n 3 183 GLU n 3 184 ILE n 3 185 PRO n 3 186 GLY n 3 187 ILE n 3 188 GLY n 3 189 SER n 3 190 VAL n 3 191 LEU n 3 192 ALA n 3 193 ARG n 3 194 ARG n 3 195 LEU n 3 196 ASN n 3 197 GLU n 3 198 LEU n 3 199 GLY n 3 200 ILE n 3 201 GLN n 3 202 LYS n 3 203 LEU n 3 204 ARG n 3 205 ASP n 3 206 ILE n 3 207 LEU n 3 208 SER n 3 209 LYS n 3 210 ASN n 3 211 TYR n 3 212 ASN n 3 213 GLU n 3 214 LEU n 3 215 GLU n 3 216 LYS n 3 217 ILE n 3 218 THR n 3 219 GLY n 3 220 LYS n 3 221 ALA n 3 222 LYS n 3 223 ALA n 3 224 LEU n 3 225 TYR n 3 226 LEU n 3 227 LEU n 3 228 LYS n 3 229 LEU n 3 230 ALA n 3 231 GLN n 3 232 ASN n 3 233 LYS n 3 234 TYR n 3 235 SER n 3 236 GLU n 3 237 PRO n 3 238 VAL n 3 239 GLU n 3 240 ASN n 3 241 LYS n 3 242 SER n 3 243 LYS n 3 244 ILE n 3 245 PRO n 3 246 HIS n 3 247 GLY n 3 248 ARG n 3 249 TYR n 3 250 LEU n 3 251 THR n 3 252 LEU n 3 253 PRO n 3 254 TYR n 3 255 ASN n 3 256 THR n 3 257 ARG n 3 258 ASP n 3 259 VAL n 3 260 LYS n 3 261 VAL n 3 262 ILE n 3 263 LEU n 3 264 PRO n 3 265 TYR n 3 266 LEU n 3 267 LYS n 3 268 LYS n 3 269 ALA n 3 270 ILE n 3 271 ASN n 3 272 GLU n 3 273 ALA n 3 274 TYR n 3 275 ASN n 3 276 LYS n 3 277 VAL n 3 278 ASN n 3 279 GLY n 3 280 ILE n 3 281 PRO n 3 282 MET n 3 283 ARG n 3 284 ILE n 3 285 THR n 3 286 VAL n 3 287 ILE n 3 288 ALA n 3 289 ILE n 3 290 MET n 3 291 GLU n 3 292 ASP n 3 293 LEU n 3 294 ASP n 3 295 ILE n 3 296 LEU n 3 297 SER n 3 298 LYS n 3 299 GLY n 3 300 LYS n 3 301 LYS n 3 302 PHE n 3 303 LYS n 3 304 HIS n 3 305 GLY n 3 306 ILE n 3 307 SER n 3 308 ILE n 3 309 ASP n 3 310 ASN n 3 311 ALA n 3 312 TYR n 3 313 LYS n 3 314 VAL n 3 315 ALA n 3 316 GLU n 3 317 ASP n 3 318 LEU n 3 319 LEU n 3 320 ARG n 3 321 GLU n 3 322 LEU n 3 323 LEU n 3 324 VAL n 3 325 ARG n 3 326 ASP n 3 327 LYS n 3 328 ARG n 3 329 ARG n 3 330 ASN n 3 331 VAL n 3 332 ARG n 3 333 ARG n 3 334 ILE n 3 335 GLY n 3 336 VAL n 3 337 LYS n 3 338 LEU n 3 339 ASP n 3 340 ASN n 3 341 ILE n 3 342 ILE n 3 343 ILE n 3 344 ASN n 3 345 LYS n 3 346 THR n 3 347 ASN n 3 348 LEU n 3 349 SER n 3 350 ASP n 3 351 PHE n 3 352 PHE n 3 353 ASP n 3 354 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene dbh _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BLR(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKKT7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO4_SULAC Q4JB80 3 ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; 1 ? 2 PDB 3BQ1 3BQ1 1 GAAGCCGGCG 1 ? 3 PDB 3BQ1 3BQ1 2 TTCCGCCCGGCTTCC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BQ1 A 1 ? 354 ? Q4JB80 1 ? 354 ? 1 354 2 2 3BQ1 P 1 ? 10 ? 3BQ1 1 ? 10 ? 1 10 3 3 3BQ1 T 1 ? 15 ? 3BQ1 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DG3 non-polymer . "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O12 P3' 491.182 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3BQ1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details 'PEG-3350, calcium acetate, glycerol, HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'calcium acetate' ? ? ? 1 2 2 'calcium acetate' ? ? ? 1 3 1 glycerol ? ? ? 1 4 2 glycerol ? ? ? 1 5 1 HEPES ? ? ? 1 6 2 HEPES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-03-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 1.0809 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3BQ1 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -0.5 _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 25 _reflns.number_all ? _reflns.number_obs 15669 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.523 _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BQ1 _refine.ls_d_res_high 2.7 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.6 _refine.ls_number_reflns_obs 14437 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.267 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 711 _refine.B_iso_mean 42.582 _refine.aniso_B[1][1] 0.660 _refine.aniso_B[2][2] 0.660 _refine.aniso_B[3][3] -1.320 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.879 _refine.pdbx_overall_ESU_R 1.225 _refine.pdbx_overall_ESU_R_Free 0.359 _refine.overall_SU_ML 0.301 _refine.overall_SU_B 30.757 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 14437 _refine.ls_R_factor_all 0.207 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB entries 1IM4 and 1K1Q' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2719 _refine_hist.pdbx_number_atoms_nucleic_acid 466 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 3257 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3316 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4572 1.242 2.181 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 343 4.720 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 115 39.030 24.783 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 542 17.946 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17 13.984 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 527 0.071 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2253 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1356 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2209 0.301 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 113 0.127 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 1 0.019 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 44 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.117 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1766 0.339 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2786 0.593 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1901 0.823 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1786 1.411 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.786 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.130 _refine_ls_shell.number_reflns_R_work 257 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.317 _refine_ls_shell.R_factor_R_free 0.397 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 6 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 263 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BQ1 _struct.title 'Insertion ternary complex of Dbh DNA polymerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BQ1 _struct_keywords.text ;DNA polymerase, Y-family, lesion bypass, single-base deletion, -1 frameshift, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase, TRANSFERASE-DNA complex ; _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR C 10 ? ASN C 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 PRO C 21 ? LYS C 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 3 ASN C 47 ? LEU C 53 ? ASN A 47 LEU A 53 1 ? 7 HELX_P HELX_P4 4 PRO C 60 ? ALA C 68 ? PRO A 60 ALA A 68 1 ? 9 HELX_P HELX_P5 5 ARG C 77 ? LYS C 94 ? ARG A 77 LYS A 94 1 ? 18 HELX_P HELX_P6 6 ASN C 118 ? LYS C 138 ? ASN A 118 LYS A 138 1 ? 21 HELX_P HELX_P7 7 ASN C 148 ? SER C 159 ? ASN A 148 SER A 159 1 ? 12 HELX_P HELX_P8 8 GLU C 171 ? LEU C 179 ? GLU A 171 LEU A 179 1 ? 9 HELX_P HELX_P9 9 ASP C 180 ? ILE C 184 ? ASP A 180 ILE A 184 5 ? 5 HELX_P HELX_P10 10 GLY C 188 ? GLU C 197 ? GLY A 188 GLU A 197 1 ? 10 HELX_P HELX_P11 11 LYS C 202 ? ILE C 206 ? LYS A 202 ILE A 206 5 ? 5 HELX_P HELX_P12 12 ASN C 210 ? GLY C 219 ? ASN A 210 GLY A 219 1 ? 10 HELX_P HELX_P13 13 LYS C 220 ? GLN C 231 ? LYS A 220 GLN A 231 1 ? 12 HELX_P HELX_P14 14 ASP C 258 ? VAL C 277 ? ASP A 258 VAL A 277 1 ? 20 HELX_P HELX_P15 15 SER C 307 ? ASP C 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D DG3 . O2B ? ? ? 1_555 E CA . CA ? ? P DG3 11 A CA 4001 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc2 metalc ? ? D DG3 . O2G ? ? ? 1_555 E CA . CA ? ? P DG3 11 A CA 4001 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc3 metalc ? ? C ASP 7 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 4001 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc4 metalc ? ? C PHE 8 O ? ? ? 1_555 E CA . CA ? ? A PHE 8 A CA 4001 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc5 metalc ? ? C ASP 105 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 4001 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc6 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 4001 A HOH 4018 1_555 ? ? ? ? ? ? ? 2.980 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 14 N3 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 14 O2 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 14 N4 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 13 N3 ? ? P DA 2 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 13 O4 ? ? P DA 2 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 12 N3 ? ? P DA 3 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 12 O4 ? ? P DA 3 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 11 N3 ? ? P DG 4 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 11 O2 ? ? P DG 4 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 11 N4 ? ? P DG 4 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? P DC 5 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? P DC 5 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? P DC 5 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 9 N1 ? ? P DC 6 T DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 9 O6 ? ? P DC 6 T DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 9 N2 ? ? P DC 6 T DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 8 N3 ? ? P DG 7 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 8 O2 ? ? P DG 7 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 8 N4 ? ? P DG 7 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 7 N3 ? ? P DG 8 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 7 O2 ? ? P DG 8 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 7 N4 ? ? P DG 8 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 5 N1 ? ? P DC 9 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 5 O6 ? ? P DC 9 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 5 N2 ? ? P DC 9 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 4 N3 ? ? P DG 10 T DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 4 O2 ? ? P DG 10 T DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 4 N4 ? ? P DG 10 T DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 160 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 160 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 161 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 161 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.17 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS C 98 ? SER C 103 ? LYS A 98 SER A 103 A 2 GLU C 106 ? ASP C 110 ? GLU A 106 ASP A 110 A 3 VAL C 3 ? PHE C 8 ? VAL A 3 PHE A 8 A 4 VAL C 141 ? ALA C 146 ? VAL A 141 ALA A 146 A 5 LEU C 164 ? VAL C 166 ? LEU A 164 VAL A 166 B 1 ALA C 42 ? ALA C 46 ? ALA A 42 ALA A 46 B 2 LEU C 28 ? VAL C 32 ? LEU A 28 VAL A 32 B 3 ILE C 72 ? PRO C 75 ? ILE A 72 PRO A 75 C 1 LYS C 241 ? SER C 242 ? LYS A 241 SER A 242 C 2 ILE C 341 ? ILE C 342 ? ILE A 341 ILE A 342 D 1 HIS C 246 ? THR C 256 ? HIS A 246 THR A 256 D 2 VAL C 331 ? ASP C 339 ? VAL A 331 ASP A 339 D 3 ARG C 283 ? MET C 290 ? ARG A 283 MET A 290 D 4 ILE C 295 ? LYS C 301 ? ILE A 295 LYS A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU C 100 ? N GLU A 100 O TYR C 108 ? O TYR A 108 A 2 3 O ALA C 107 ? O ALA A 107 N VAL C 6 ? N VAL A 6 A 3 4 N VAL C 3 ? N VAL A 3 O ALA C 146 ? O ALA A 146 A 4 5 N VAL C 143 ? N VAL A 143 O GLY C 165 ? O GLY A 165 B 1 2 O THR C 45 ? O THR A 45 N VAL C 30 ? N VAL A 30 B 2 3 N CYS C 31 ? N CYS A 31 O VAL C 74 ? O VAL A 74 C 1 2 N SER C 242 ? N SER A 242 O ILE C 341 ? O ILE A 341 D 1 2 N LEU C 250 ? N LEU A 250 O ILE C 334 ? O ILE A 334 D 2 3 O ARG C 333 ? O ARG A 333 N ILE C 289 ? N ILE A 289 D 3 4 N ALA C 288 ? N ALA A 288 O LEU C 296 ? O LEU A 296 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 4001 ? 4 'BINDING SITE FOR RESIDUE CA A 4001' AC2 Software P DG3 11 ? 16 'BINDING SITE FOR RESIDUE DG3 P 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP C 7 ? ASP A 7 . ? 1_555 ? 2 AC1 4 PHE C 8 ? PHE A 8 . ? 1_555 ? 3 AC1 4 ASP C 105 ? ASP A 105 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH A 4018 . ? 1_555 ? 5 AC2 16 ASP C 7 ? ASP A 7 . ? 1_555 ? 6 AC2 16 PHE C 8 ? PHE A 8 . ? 1_555 ? 7 AC2 16 TYR C 10 ? TYR A 10 . ? 1_555 ? 8 AC2 16 PHE C 11 ? PHE A 11 . ? 1_555 ? 9 AC2 16 PHE C 12 ? PHE A 12 . ? 1_555 ? 10 AC2 16 ALA C 44 ? ALA A 44 . ? 1_555 ? 11 AC2 16 THR C 45 ? THR A 45 . ? 1_555 ? 12 AC2 16 ARG C 51 ? ARG A 51 . ? 1_555 ? 13 AC2 16 GLY C 58 ? GLY A 58 . ? 1_555 ? 14 AC2 16 ASP C 105 ? ASP A 105 . ? 1_555 ? 15 AC2 16 LYS C 160 ? LYS A 160 . ? 1_555 ? 16 AC2 16 HOH H . ? HOH A 4018 . ? 1_555 ? 17 AC2 16 DG A 10 ? DG P 10 . ? 1_555 ? 18 AC2 16 HOH F . ? HOH P 29 . ? 1_555 ? 19 AC2 16 DC B 3 ? DC T 3 . ? 1_555 ? 20 AC2 16 DC B 4 ? DC T 4 . ? 1_555 ? # _atom_sites.entry_id 3BQ1 _atom_sites.fract_transf_matrix[1][1] 0.008003 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008003 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014243 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG P . n A 1 2 DA 2 2 2 DA DA P . n A 1 3 DA 3 3 3 DA DA P . n A 1 4 DG 4 4 4 DG DG P . n A 1 5 DC 5 5 5 DC DC P . n A 1 6 DC 6 6 6 DC DC P . n A 1 7 DG 7 7 7 DG DG P . n A 1 8 DG 8 8 8 DG DG P . n A 1 9 DC 9 9 9 DC DC P . n A 1 10 DG 10 10 10 DG DG P . n B 2 1 DT 1 1 ? ? ? T . n B 2 2 DT 2 2 2 DT DT T . n B 2 3 DC 3 3 3 DC DC T . n B 2 4 DC 4 4 4 DC DC T . n B 2 5 DG 5 5 5 DG DG T . n B 2 6 DC 6 6 6 DC DC T . n B 2 7 DC 7 7 7 DC DC T . n B 2 8 DC 8 8 8 DC DC T . n B 2 9 DG 9 9 9 DG DG T . n B 2 10 DG 10 10 10 DG DG T . n B 2 11 DC 11 11 11 DC DC T . n B 2 12 DT 12 12 12 DT DT T . n B 2 13 DT 13 13 13 DT DT T . n B 2 14 DC 14 14 14 DC DC T . n B 2 15 DC 15 15 15 DC DC T . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 VAL 3 3 3 VAL VAL A . n C 3 4 ILE 4 4 4 ILE ILE A . n C 3 5 PHE 5 5 5 PHE PHE A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 ASP 7 7 7 ASP ASP A . n C 3 8 PHE 8 8 8 PHE PHE A . n C 3 9 ASP 9 9 9 ASP ASP A . n C 3 10 TYR 10 10 10 TYR TYR A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 PHE 12 12 12 PHE PHE A . n C 3 13 ALA 13 13 13 ALA ALA A . n C 3 14 GLN 14 14 14 GLN GLN A . n C 3 15 VAL 15 15 15 VAL VAL A . n C 3 16 GLU 16 16 16 GLU GLU A . n C 3 17 GLU 17 17 17 GLU GLU A . n C 3 18 VAL 18 18 18 VAL VAL A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 ASN 20 20 20 ASN ASN A . n C 3 21 PRO 21 21 21 PRO PRO A . n C 3 22 GLN 22 22 22 GLN GLN A . n C 3 23 TYR 23 23 23 TYR TYR A . n C 3 24 LYS 24 24 24 LYS LYS A . n C 3 25 GLY 25 25 25 GLY GLY A . n C 3 26 LYS 26 26 26 LYS LYS A . n C 3 27 PRO 27 27 27 PRO PRO A . n C 3 28 LEU 28 28 28 LEU LEU A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 VAL 30 30 30 VAL VAL A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 VAL 32 32 32 VAL VAL A . n C 3 33 TYR 33 33 33 TYR TYR A . n C 3 34 SER 34 34 34 SER SER A . n C 3 35 GLY 35 35 35 GLY GLY A . n C 3 36 ARG 36 36 36 ARG ARG A . n C 3 37 THR 37 37 37 THR THR A . n C 3 38 LYS 38 38 38 LYS LYS A . n C 3 39 THR 39 39 39 THR THR A . n C 3 40 SER 40 40 40 SER SER A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 VAL 43 43 43 VAL VAL A . n C 3 44 ALA 44 44 44 ALA ALA A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 ALA 46 46 46 ALA ALA A . n C 3 47 ASN 47 47 47 ASN ASN A . n C 3 48 TYR 48 48 48 TYR TYR A . n C 3 49 GLU 49 49 49 GLU GLU A . n C 3 50 ALA 50 50 50 ALA ALA A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 LEU 53 53 53 LEU LEU A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 VAL 55 55 55 VAL VAL A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLY 58 58 58 GLY GLY A . n C 3 59 MET 59 59 59 MET MET A . n C 3 60 PRO 60 60 60 PRO PRO A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 ILE 62 62 62 ILE ILE A . n C 3 63 LYS 63 63 63 LYS LYS A . n C 3 64 ALA 64 64 64 ALA ALA A . n C 3 65 MET 65 65 65 MET MET A . n C 3 66 GLN 66 66 66 GLN GLN A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 ALA 68 68 68 ALA ALA A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 SER 70 70 70 SER SER A . n C 3 71 ALA 71 71 71 ALA ALA A . n C 3 72 ILE 72 72 72 ILE ILE A . n C 3 73 TYR 73 73 73 TYR TYR A . n C 3 74 VAL 74 74 74 VAL VAL A . n C 3 75 PRO 75 75 75 PRO PRO A . n C 3 76 MET 76 76 76 MET MET A . n C 3 77 ARG 77 77 77 ARG ARG A . n C 3 78 LYS 78 78 78 LYS LYS A . n C 3 79 PRO 79 79 79 PRO PRO A . n C 3 80 ILE 80 80 80 ILE ILE A . n C 3 81 TYR 81 81 81 TYR TYR A . n C 3 82 GLU 82 82 82 GLU GLU A . n C 3 83 ALA 83 83 83 ALA ALA A . n C 3 84 PHE 84 84 84 PHE PHE A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 ASN 86 86 86 ASN ASN A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 MET 89 89 89 MET MET A . n C 3 90 ASN 90 90 90 ASN ASN A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 LEU 92 92 92 LEU LEU A . n C 3 93 ASN 93 93 93 ASN ASN A . n C 3 94 LYS 94 94 94 LYS LYS A . n C 3 95 HIS 95 95 95 HIS HIS A . n C 3 96 ALA 96 96 96 ALA ALA A . n C 3 97 ASP 97 97 97 ASP ASP A . n C 3 98 LYS 98 98 98 LYS LYS A . n C 3 99 ILE 99 99 99 ILE ILE A . n C 3 100 GLU 100 100 100 GLU GLU A . n C 3 101 VAL 101 101 101 VAL VAL A . n C 3 102 ALA 102 102 102 ALA ALA A . n C 3 103 SER 103 103 103 SER SER A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ASP 105 105 105 ASP ASP A . n C 3 106 GLU 106 106 106 GLU GLU A . n C 3 107 ALA 107 107 107 ALA ALA A . n C 3 108 TYR 108 108 108 TYR TYR A . n C 3 109 LEU 109 109 109 LEU LEU A . n C 3 110 ASP 110 110 110 ASP ASP A . n C 3 111 VAL 111 111 111 VAL VAL A . n C 3 112 THR 112 112 112 THR THR A . n C 3 113 ASN 113 113 113 ASN ASN A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 GLU 116 116 116 GLU GLU A . n C 3 117 GLY 117 117 117 GLY GLY A . n C 3 118 ASN 118 118 118 ASN ASN A . n C 3 119 PHE 119 119 119 PHE PHE A . n C 3 120 GLU 120 120 120 GLU GLU A . n C 3 121 ASN 121 121 121 ASN ASN A . n C 3 122 GLY 122 122 122 GLY GLY A . n C 3 123 ILE 123 123 123 ILE ILE A . n C 3 124 GLU 124 124 124 GLU GLU A . n C 3 125 LEU 125 125 125 LEU LEU A . n C 3 126 ALA 126 126 126 ALA ALA A . n C 3 127 ARG 127 127 127 ARG ARG A . n C 3 128 LYS 128 128 128 LYS LYS A . n C 3 129 ILE 129 129 129 ILE ILE A . n C 3 130 LYS 130 130 130 LYS LYS A . n C 3 131 GLN 131 131 131 GLN GLN A . n C 3 132 GLU 132 132 132 GLU GLU A . n C 3 133 ILE 133 133 133 ILE ILE A . n C 3 134 LEU 134 134 134 LEU LEU A . n C 3 135 GLU 135 135 135 GLU GLU A . n C 3 136 LYS 136 136 136 LYS LYS A . n C 3 137 GLU 137 137 137 GLU GLU A . n C 3 138 LYS 138 138 138 LYS LYS A . n C 3 139 ILE 139 139 139 ILE ILE A . n C 3 140 THR 140 140 140 THR THR A . n C 3 141 VAL 141 141 141 VAL VAL A . n C 3 142 THR 142 142 142 THR THR A . n C 3 143 VAL 143 143 143 VAL VAL A . n C 3 144 GLY 144 144 144 GLY GLY A . n C 3 145 VAL 145 145 145 VAL VAL A . n C 3 146 ALA 146 146 146 ALA ALA A . n C 3 147 PRO 147 147 147 PRO PRO A . n C 3 148 ASN 148 148 148 ASN ASN A . n C 3 149 LYS 149 149 149 LYS LYS A . n C 3 150 ILE 150 150 150 ILE ILE A . n C 3 151 LEU 151 151 151 LEU LEU A . n C 3 152 ALA 152 152 152 ALA ALA A . n C 3 153 LYS 153 153 153 LYS LYS A . n C 3 154 ILE 154 154 154 ILE ILE A . n C 3 155 ILE 155 155 155 ILE ILE A . n C 3 156 ALA 156 156 156 ALA ALA A . n C 3 157 ASP 157 157 157 ASP ASP A . n C 3 158 LYS 158 158 158 LYS LYS A . n C 3 159 SER 159 159 159 SER SER A . n C 3 160 LYS 160 160 160 LYS LYS A . n C 3 161 PRO 161 161 161 PRO PRO A . n C 3 162 ASN 162 162 162 ASN ASN A . n C 3 163 GLY 163 163 163 GLY GLY A . n C 3 164 LEU 164 164 164 LEU LEU A . n C 3 165 GLY 165 165 165 GLY GLY A . n C 3 166 VAL 166 166 166 VAL VAL A . n C 3 167 ILE 167 167 167 ILE ILE A . n C 3 168 ARG 168 168 168 ARG ARG A . n C 3 169 PRO 169 169 169 PRO PRO A . n C 3 170 THR 170 170 170 THR THR A . n C 3 171 GLU 171 171 171 GLU GLU A . n C 3 172 VAL 172 172 172 VAL VAL A . n C 3 173 GLN 173 173 173 GLN GLN A . n C 3 174 ASP 174 174 174 ASP ASP A . n C 3 175 PHE 175 175 175 PHE PHE A . n C 3 176 LEU 176 176 176 LEU LEU A . n C 3 177 ASN 177 177 177 ASN ASN A . n C 3 178 GLU 178 178 178 GLU GLU A . n C 3 179 LEU 179 179 179 LEU LEU A . n C 3 180 ASP 180 180 180 ASP ASP A . n C 3 181 ILE 181 181 181 ILE ILE A . n C 3 182 ASP 182 182 182 ASP ASP A . n C 3 183 GLU 183 183 183 GLU GLU A . n C 3 184 ILE 184 184 184 ILE ILE A . n C 3 185 PRO 185 185 185 PRO PRO A . n C 3 186 GLY 186 186 186 GLY GLY A . n C 3 187 ILE 187 187 187 ILE ILE A . n C 3 188 GLY 188 188 188 GLY GLY A . n C 3 189 SER 189 189 189 SER SER A . n C 3 190 VAL 190 190 190 VAL VAL A . n C 3 191 LEU 191 191 191 LEU LEU A . n C 3 192 ALA 192 192 192 ALA ALA A . n C 3 193 ARG 193 193 193 ARG ARG A . n C 3 194 ARG 194 194 194 ARG ARG A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 ASN 196 196 196 ASN ASN A . n C 3 197 GLU 197 197 197 GLU GLU A . n C 3 198 LEU 198 198 198 LEU LEU A . n C 3 199 GLY 199 199 199 GLY GLY A . n C 3 200 ILE 200 200 200 ILE ILE A . n C 3 201 GLN 201 201 201 GLN GLN A . n C 3 202 LYS 202 202 202 LYS LYS A . n C 3 203 LEU 203 203 203 LEU LEU A . n C 3 204 ARG 204 204 204 ARG ARG A . n C 3 205 ASP 205 205 205 ASP ASP A . n C 3 206 ILE 206 206 206 ILE ILE A . n C 3 207 LEU 207 207 207 LEU LEU A . n C 3 208 SER 208 208 208 SER SER A . n C 3 209 LYS 209 209 209 LYS LYS A . n C 3 210 ASN 210 210 210 ASN ASN A . n C 3 211 TYR 211 211 211 TYR TYR A . n C 3 212 ASN 212 212 212 ASN ASN A . n C 3 213 GLU 213 213 213 GLU GLU A . n C 3 214 LEU 214 214 214 LEU LEU A . n C 3 215 GLU 215 215 215 GLU GLU A . n C 3 216 LYS 216 216 216 LYS LYS A . n C 3 217 ILE 217 217 217 ILE ILE A . n C 3 218 THR 218 218 218 THR THR A . n C 3 219 GLY 219 219 219 GLY GLY A . n C 3 220 LYS 220 220 220 LYS LYS A . n C 3 221 ALA 221 221 221 ALA ALA A . n C 3 222 LYS 222 222 222 LYS LYS A . n C 3 223 ALA 223 223 223 ALA ALA A . n C 3 224 LEU 224 224 224 LEU LEU A . n C 3 225 TYR 225 225 225 TYR TYR A . n C 3 226 LEU 226 226 226 LEU LEU A . n C 3 227 LEU 227 227 227 LEU LEU A . n C 3 228 LYS 228 228 228 LYS LYS A . n C 3 229 LEU 229 229 229 LEU LEU A . n C 3 230 ALA 230 230 230 ALA ALA A . n C 3 231 GLN 231 231 231 GLN GLN A . n C 3 232 ASN 232 232 232 ASN ASN A . n C 3 233 LYS 233 233 233 LYS LYS A . n C 3 234 TYR 234 234 234 TYR TYR A . n C 3 235 SER 235 235 235 SER SER A . n C 3 236 GLU 236 236 236 GLU GLU A . n C 3 237 PRO 237 237 237 PRO PRO A . n C 3 238 VAL 238 238 238 VAL VAL A . n C 3 239 GLU 239 239 239 GLU GLU A . n C 3 240 ASN 240 240 240 ASN ASN A . n C 3 241 LYS 241 241 241 LYS LYS A . n C 3 242 SER 242 242 242 SER SER A . n C 3 243 LYS 243 243 243 LYS LYS A . n C 3 244 ILE 244 244 244 ILE ILE A . n C 3 245 PRO 245 245 245 PRO PRO A . n C 3 246 HIS 246 246 246 HIS HIS A . n C 3 247 GLY 247 247 247 GLY GLY A . n C 3 248 ARG 248 248 248 ARG ARG A . n C 3 249 TYR 249 249 249 TYR TYR A . n C 3 250 LEU 250 250 250 LEU LEU A . n C 3 251 THR 251 251 251 THR THR A . n C 3 252 LEU 252 252 252 LEU LEU A . n C 3 253 PRO 253 253 253 PRO PRO A . n C 3 254 TYR 254 254 254 TYR TYR A . n C 3 255 ASN 255 255 255 ASN ASN A . n C 3 256 THR 256 256 256 THR THR A . n C 3 257 ARG 257 257 257 ARG ARG A . n C 3 258 ASP 258 258 258 ASP ASP A . n C 3 259 VAL 259 259 259 VAL VAL A . n C 3 260 LYS 260 260 260 LYS LYS A . n C 3 261 VAL 261 261 261 VAL VAL A . n C 3 262 ILE 262 262 262 ILE ILE A . n C 3 263 LEU 263 263 263 LEU LEU A . n C 3 264 PRO 264 264 264 PRO PRO A . n C 3 265 TYR 265 265 265 TYR TYR A . n C 3 266 LEU 266 266 266 LEU LEU A . n C 3 267 LYS 267 267 267 LYS LYS A . n C 3 268 LYS 268 268 268 LYS LYS A . n C 3 269 ALA 269 269 269 ALA ALA A . n C 3 270 ILE 270 270 270 ILE ILE A . n C 3 271 ASN 271 271 271 ASN ASN A . n C 3 272 GLU 272 272 272 GLU GLU A . n C 3 273 ALA 273 273 273 ALA ALA A . n C 3 274 TYR 274 274 274 TYR TYR A . n C 3 275 ASN 275 275 275 ASN ASN A . n C 3 276 LYS 276 276 276 LYS LYS A . n C 3 277 VAL 277 277 277 VAL VAL A . n C 3 278 ASN 278 278 278 ASN ASN A . n C 3 279 GLY 279 279 279 GLY GLY A . n C 3 280 ILE 280 280 280 ILE ILE A . n C 3 281 PRO 281 281 281 PRO PRO A . n C 3 282 MET 282 282 282 MET MET A . n C 3 283 ARG 283 283 283 ARG ARG A . n C 3 284 ILE 284 284 284 ILE ILE A . n C 3 285 THR 285 285 285 THR THR A . n C 3 286 VAL 286 286 286 VAL VAL A . n C 3 287 ILE 287 287 287 ILE ILE A . n C 3 288 ALA 288 288 288 ALA ALA A . n C 3 289 ILE 289 289 289 ILE ILE A . n C 3 290 MET 290 290 290 MET MET A . n C 3 291 GLU 291 291 291 GLU GLU A . n C 3 292 ASP 292 292 292 ASP ASP A . n C 3 293 LEU 293 293 293 LEU LEU A . n C 3 294 ASP 294 294 294 ASP ASP A . n C 3 295 ILE 295 295 295 ILE ILE A . n C 3 296 LEU 296 296 296 LEU LEU A . n C 3 297 SER 297 297 297 SER SER A . n C 3 298 LYS 298 298 298 LYS LYS A . n C 3 299 GLY 299 299 299 GLY GLY A . n C 3 300 LYS 300 300 300 LYS LYS A . n C 3 301 LYS 301 301 301 LYS LYS A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 LYS 303 303 303 LYS LYS A . n C 3 304 HIS 304 304 304 HIS HIS A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 ILE 306 306 306 ILE ILE A . n C 3 307 SER 307 307 307 SER SER A . n C 3 308 ILE 308 308 308 ILE ILE A . n C 3 309 ASP 309 309 309 ASP ASP A . n C 3 310 ASN 310 310 310 ASN ASN A . n C 3 311 ALA 311 311 311 ALA ALA A . n C 3 312 TYR 312 312 312 TYR TYR A . n C 3 313 LYS 313 313 313 LYS LYS A . n C 3 314 VAL 314 314 314 VAL VAL A . n C 3 315 ALA 315 315 315 ALA ALA A . n C 3 316 GLU 316 316 316 GLU GLU A . n C 3 317 ASP 317 317 317 ASP ASP A . n C 3 318 LEU 318 318 318 LEU LEU A . n C 3 319 LEU 319 319 319 LEU LEU A . n C 3 320 ARG 320 320 320 ARG ARG A . n C 3 321 GLU 321 321 321 GLU GLU A . n C 3 322 LEU 322 322 322 LEU LEU A . n C 3 323 LEU 323 323 323 LEU LEU A . n C 3 324 VAL 324 324 324 VAL VAL A . n C 3 325 ARG 325 325 325 ARG ARG A . n C 3 326 ASP 326 326 326 ASP ASP A . n C 3 327 LYS 327 327 327 LYS LYS A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 ARG 329 329 329 ARG ARG A . n C 3 330 ASN 330 330 330 ASN ASN A . n C 3 331 VAL 331 331 331 VAL VAL A . n C 3 332 ARG 332 332 332 ARG ARG A . n C 3 333 ARG 333 333 333 ARG ARG A . n C 3 334 ILE 334 334 334 ILE ILE A . n C 3 335 GLY 335 335 335 GLY GLY A . n C 3 336 VAL 336 336 336 VAL VAL A . n C 3 337 LYS 337 337 337 LYS LYS A . n C 3 338 LEU 338 338 338 LEU LEU A . n C 3 339 ASP 339 339 339 ASP ASP A . n C 3 340 ASN 340 340 340 ASN ASN A . n C 3 341 ILE 341 341 341 ILE ILE A . n C 3 342 ILE 342 342 342 ILE ILE A . n C 3 343 ILE 343 343 343 ILE ILE A . n C 3 344 ASN 344 344 344 ASN ASN A . n C 3 345 LYS 345 345 ? ? ? A . n C 3 346 THR 346 346 ? ? ? A . n C 3 347 ASN 347 347 ? ? ? A . n C 3 348 LEU 348 348 ? ? ? A . n C 3 349 SER 349 349 ? ? ? A . n C 3 350 ASP 350 350 ? ? ? A . n C 3 351 PHE 351 351 ? ? ? A . n C 3 352 PHE 352 352 ? ? ? A . n C 3 353 ASP 353 353 ? ? ? A . n C 3 354 ILE 354 354 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DG3 1 11 1 DG3 DG3 P . E 5 CA 1 4001 4001 CA CA A . F 6 HOH 1 27 27 HOH HOH P . F 6 HOH 2 29 29 HOH HOH P . F 6 HOH 3 36 36 HOH HOH P . G 6 HOH 1 16 1 HOH HOH T . G 6 HOH 2 17 26 HOH HOH T . G 6 HOH 3 18 38 HOH HOH T . H 6 HOH 1 4002 2 HOH HOH A . H 6 HOH 2 4003 3 HOH HOH A . H 6 HOH 3 4004 4 HOH HOH A . H 6 HOH 4 4005 5 HOH HOH A . H 6 HOH 5 4006 6 HOH HOH A . H 6 HOH 6 4007 7 HOH HOH A . H 6 HOH 7 4008 8 HOH HOH A . H 6 HOH 8 4009 9 HOH HOH A . H 6 HOH 9 4010 10 HOH HOH A . H 6 HOH 10 4011 11 HOH HOH A . H 6 HOH 11 4012 12 HOH HOH A . H 6 HOH 12 4013 13 HOH HOH A . H 6 HOH 13 4014 14 HOH HOH A . H 6 HOH 14 4015 15 HOH HOH A . H 6 HOH 15 4016 16 HOH HOH A . H 6 HOH 16 4017 17 HOH HOH A . H 6 HOH 17 4018 18 HOH HOH A . H 6 HOH 18 4019 19 HOH HOH A . H 6 HOH 19 4020 20 HOH HOH A . H 6 HOH 20 4021 21 HOH HOH A . H 6 HOH 21 4022 22 HOH HOH A . H 6 HOH 22 4023 23 HOH HOH A . H 6 HOH 23 4024 24 HOH HOH A . H 6 HOH 24 4025 25 HOH HOH A . H 6 HOH 25 4026 28 HOH HOH A . H 6 HOH 26 4027 30 HOH HOH A . H 6 HOH 27 4028 31 HOH HOH A . H 6 HOH 28 4029 32 HOH HOH A . H 6 HOH 29 4030 33 HOH HOH A . H 6 HOH 30 4031 34 HOH HOH A . H 6 HOH 31 4032 35 HOH HOH A . H 6 HOH 32 4033 37 HOH HOH A . H 6 HOH 33 4034 39 HOH HOH A . H 6 HOH 34 4035 40 HOH HOH A . H 6 HOH 35 4036 41 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3800 ? 1 MORE -34.8 ? 1 'SSA (A^2)' 20580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2B ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O2G ? D DG3 . ? P DG3 11 ? 1_555 77.7 ? 2 O2B ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 161.2 ? 3 O2G ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 102.9 ? 4 O2B ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? C PHE 8 ? A PHE 8 ? 1_555 84.8 ? 5 O2G ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? C PHE 8 ? A PHE 8 ? 1_555 98.4 ? 6 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? C PHE 8 ? A PHE 8 ? 1_555 76.5 ? 7 O2B ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 88.4 ? 8 O2G ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 162.0 ? 9 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 93.9 ? 10 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 91.7 ? 11 O2B ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? H HOH . ? A HOH 4018 ? 1_555 112.0 ? 12 O2G ? D DG3 . ? P DG3 11 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? H HOH . ? A HOH 4018 ? 1_555 109.9 ? 13 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? H HOH . ? A HOH 4018 ? 1_555 85.7 ? 14 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? H HOH . ? A HOH 4018 ? 1_555 149.3 ? 15 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 4001 ? 1_555 O ? H HOH . ? A HOH 4018 ? 1_555 64.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 36.4731 23.7167 -16.2550 -0.1364 -0.2609 -0.1699 0.1040 0.0034 0.0108 3.7732 2.9560 8.4046 -1.7225 2.8887 -2.2423 -0.1278 0.2680 -0.1402 -0.1759 0.0944 0.0603 0.5939 -0.1606 0.0261 'X-RAY DIFFRACTION' 2 ? refined 25.4967 8.0272 3.1778 0.7697 0.3022 0.5936 0.1921 0.3154 0.0561 6.2892 5.1271 4.4685 3.2636 0.5072 -0.1177 -0.1621 -0.1418 0.3039 -0.5781 -0.6095 1.5165 1.5075 0.6813 -0.7497 'X-RAY DIFFRACTION' 3 ? refined 46.0571 -2.7752 -25.8630 0.1066 0.0167 -0.0451 0.0255 0.0388 0.0347 3.8478 7.4374 9.3826 0.3578 0.3188 3.7325 -0.3965 0.2454 0.1511 0.3756 -0.4833 -0.3253 -0.3564 0.7984 0.1979 'X-RAY DIFFRACTION' 4 ? refined 29.0816 -2.6905 -16.7683 0.3642 -0.0767 0.5107 0.1741 -0.1298 0.2685 2.3760 10.4653 2.6938 0.3269 0.5364 -0.7635 -0.0688 0.0520 0.0169 0.7358 0.6858 1.8674 -0.3183 -0.4840 -0.2952 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 C 1 C 168 ? A 1 A 168 'X-RAY DIFFRACTION' ? 2 2 C 169 C 232 ? A 169 A 232 'X-RAY DIFFRACTION' ? 3 3 C 233 C 344 ? A 233 A 344 'X-RAY DIFFRACTION' ? 4 4 A 1 A 10 ? P 1 P 10 'X-RAY DIFFRACTION' ? 5 4 B 2 B 15 ? T 2 T 15 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 CBASS . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 5 PHASER . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" P DA 2 ? ? "C2'" P DA 2 ? ? "C1'" P DA 2 ? ? 96.14 102.40 -6.26 0.80 N 2 1 "O4'" P DG 4 ? ? "C1'" P DG 4 ? ? N9 P DG 4 ? ? 111.77 108.30 3.47 0.30 N 3 1 "C3'" P DG 4 ? ? "O3'" P DG 4 ? ? P P DC 5 ? ? 128.14 119.70 8.44 1.20 Y 4 1 "O4'" P DC 6 ? ? "C1'" P DC 6 ? ? N1 P DC 6 ? ? 110.39 108.30 2.09 0.30 N 5 1 "O4'" T DT 2 ? ? "C1'" T DT 2 ? ? N1 T DT 2 ? ? 110.94 108.30 2.64 0.30 N 6 1 "C3'" T DT 2 ? ? "O3'" T DT 2 ? ? P T DC 3 ? ? 128.60 119.70 8.90 1.20 Y 7 1 "O4'" T DC 7 ? ? "C1'" T DC 7 ? ? N1 T DC 7 ? ? 110.76 108.30 2.46 0.30 N 8 1 "C3'" T DC 8 ? ? "C2'" T DC 8 ? ? "C1'" T DC 8 ? ? 97.60 102.40 -4.80 0.80 N 9 1 "O4'" T DC 8 ? ? "C1'" T DC 8 ? ? N1 T DC 8 ? ? 111.23 108.30 2.93 0.30 N 10 1 "O4'" T DC 11 ? ? "C1'" T DC 11 ? ? N1 T DC 11 ? ? 111.27 108.30 2.97 0.30 N 11 1 "O4'" T DT 12 ? ? "C1'" T DT 12 ? ? N1 T DT 12 ? ? 110.71 108.30 2.41 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 28.61 60.16 2 1 ARG A 36 ? ? -68.58 -162.98 3 1 LYS A 220 ? ? -146.06 -64.64 4 1 SER A 235 ? ? -166.88 36.67 5 1 LEU A 293 ? ? 71.07 -11.52 6 1 LYS A 298 ? ? -174.06 135.31 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 T DT 2 ? P ? B DT 2 P 2 1 Y 1 T DT 2 ? OP1 ? B DT 2 OP1 3 1 Y 1 T DT 2 ? OP2 ? B DT 2 OP2 4 1 Y 1 T DC 15 ? "C5'" ? B DC 15 "C5'" 5 1 Y 1 T DC 15 ? "C4'" ? B DC 15 "C4'" 6 1 Y 1 T DC 15 ? "O4'" ? B DC 15 "O4'" 7 1 Y 1 T DC 15 ? "C3'" ? B DC 15 "C3'" 8 1 Y 1 T DC 15 ? "O3'" ? B DC 15 "O3'" 9 1 Y 1 T DC 15 ? "C2'" ? B DC 15 "C2'" 10 1 Y 1 T DC 15 ? "C1'" ? B DC 15 "C1'" 11 1 Y 1 T DC 15 ? N1 ? B DC 15 N1 12 1 Y 1 T DC 15 ? C2 ? B DC 15 C2 13 1 Y 1 T DC 15 ? O2 ? B DC 15 O2 14 1 Y 1 T DC 15 ? N3 ? B DC 15 N3 15 1 Y 1 T DC 15 ? C4 ? B DC 15 C4 16 1 Y 1 T DC 15 ? N4 ? B DC 15 N4 17 1 Y 1 T DC 15 ? C5 ? B DC 15 C5 18 1 Y 1 T DC 15 ? C6 ? B DC 15 C6 19 1 Y 1 A ARG 36 ? CG ? C ARG 36 CG 20 1 Y 1 A ARG 36 ? CD ? C ARG 36 CD 21 1 Y 1 A ARG 36 ? NE ? C ARG 36 NE 22 1 Y 1 A ARG 36 ? CZ ? C ARG 36 CZ 23 1 Y 1 A ARG 36 ? NH1 ? C ARG 36 NH1 24 1 Y 1 A ARG 36 ? NH2 ? C ARG 36 NH2 25 1 Y 1 A THR 37 ? OG1 ? C THR 37 OG1 26 1 Y 1 A THR 37 ? CG2 ? C THR 37 CG2 27 1 Y 1 A LYS 38 ? CG ? C LYS 38 CG 28 1 Y 1 A LYS 38 ? CD ? C LYS 38 CD 29 1 Y 1 A LYS 38 ? CE ? C LYS 38 CE 30 1 Y 1 A LYS 38 ? NZ ? C LYS 38 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 T DT 1 ? B DT 1 2 1 Y 1 A LYS 345 ? C LYS 345 3 1 Y 1 A THR 346 ? C THR 346 4 1 Y 1 A ASN 347 ? C ASN 347 5 1 Y 1 A LEU 348 ? C LEU 348 6 1 Y 1 A SER 349 ? C SER 349 7 1 Y 1 A ASP 350 ? C ASP 350 8 1 Y 1 A PHE 351 ? C PHE 351 9 1 Y 1 A PHE 352 ? C PHE 352 10 1 Y 1 A ASP 353 ? C ASP 353 11 1 Y 1 A ILE 354 ? C ILE 354 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DG OP3 O N N 159 DG P P N N 160 DG OP1 O N N 161 DG OP2 O N N 162 DG "O5'" O N N 163 DG "C5'" C N N 164 DG "C4'" C N R 165 DG "O4'" O N N 166 DG "C3'" C N S 167 DG "O3'" O N N 168 DG "C2'" C N N 169 DG "C1'" C N R 170 DG N9 N Y N 171 DG C8 C Y N 172 DG N7 N Y N 173 DG C5 C Y N 174 DG C6 C N N 175 DG O6 O N N 176 DG N1 N N N 177 DG C2 C N N 178 DG N2 N N N 179 DG N3 N N N 180 DG C4 C Y N 181 DG HOP3 H N N 182 DG HOP2 H N N 183 DG "H5'" H N N 184 DG "H5''" H N N 185 DG "H4'" H N N 186 DG "H3'" H N N 187 DG "HO3'" H N N 188 DG "H2'" H N N 189 DG "H2''" H N N 190 DG "H1'" H N N 191 DG H8 H N N 192 DG H1 H N N 193 DG H21 H N N 194 DG H22 H N N 195 DG3 PG P N N 196 DG3 O1G O N N 197 DG3 O2G O N N 198 DG3 O3G O N N 199 DG3 O3B O N N 200 DG3 PB P N R 201 DG3 O1B O N N 202 DG3 O2B O N N 203 DG3 O3A O N N 204 DG3 PA P N R 205 DG3 O1A O N N 206 DG3 O2A O N N 207 DG3 "O5'" O N N 208 DG3 "C5'" C N N 209 DG3 "C4'" C N S 210 DG3 "O4'" O N N 211 DG3 "C3'" C N N 212 DG3 "C2'" C N N 213 DG3 "C1'" C N R 214 DG3 N9 N Y N 215 DG3 C8 C Y N 216 DG3 N7 N Y N 217 DG3 C5 C Y N 218 DG3 C6 C N N 219 DG3 O6 O N N 220 DG3 N1 N N N 221 DG3 C2 C N N 222 DG3 N2 N N N 223 DG3 N3 N N N 224 DG3 C4 C Y N 225 DG3 HOG2 H N N 226 DG3 HOG3 H N N 227 DG3 HOB2 H N N 228 DG3 HOA2 H N N 229 DG3 "H5'1" H N N 230 DG3 "H5'2" H N N 231 DG3 "H4'" H N N 232 DG3 "H3'1" H N N 233 DG3 "H3'2" H N N 234 DG3 "H2'1" H N N 235 DG3 "H2'2" H N N 236 DG3 "H1'" H N N 237 DG3 H8 H N N 238 DG3 HN1 H N N 239 DG3 HN21 H N N 240 DG3 HN22 H N N 241 DT OP3 O N N 242 DT P P N N 243 DT OP1 O N N 244 DT OP2 O N N 245 DT "O5'" O N N 246 DT "C5'" C N N 247 DT "C4'" C N R 248 DT "O4'" O N N 249 DT "C3'" C N S 250 DT "O3'" O N N 251 DT "C2'" C N N 252 DT "C1'" C N R 253 DT N1 N N N 254 DT C2 C N N 255 DT O2 O N N 256 DT N3 N N N 257 DT C4 C N N 258 DT O4 O N N 259 DT C5 C N N 260 DT C7 C N N 261 DT C6 C N N 262 DT HOP3 H N N 263 DT HOP2 H N N 264 DT "H5'" H N N 265 DT "H5''" H N N 266 DT "H4'" H N N 267 DT "H3'" H N N 268 DT "HO3'" H N N 269 DT "H2'" H N N 270 DT "H2''" H N N 271 DT "H1'" H N N 272 DT H3 H N N 273 DT H71 H N N 274 DT H72 H N N 275 DT H73 H N N 276 DT H6 H N N 277 GLN N N N N 278 GLN CA C N S 279 GLN C C N N 280 GLN O O N N 281 GLN CB C N N 282 GLN CG C N N 283 GLN CD C N N 284 GLN OE1 O N N 285 GLN NE2 N N N 286 GLN OXT O N N 287 GLN H H N N 288 GLN H2 H N N 289 GLN HA H N N 290 GLN HB2 H N N 291 GLN HB3 H N N 292 GLN HG2 H N N 293 GLN HG3 H N N 294 GLN HE21 H N N 295 GLN HE22 H N N 296 GLN HXT H N N 297 GLU N N N N 298 GLU CA C N S 299 GLU C C N N 300 GLU O O N N 301 GLU CB C N N 302 GLU CG C N N 303 GLU CD C N N 304 GLU OE1 O N N 305 GLU OE2 O N N 306 GLU OXT O N N 307 GLU H H N N 308 GLU H2 H N N 309 GLU HA H N N 310 GLU HB2 H N N 311 GLU HB3 H N N 312 GLU HG2 H N N 313 GLU HG3 H N N 314 GLU HE2 H N N 315 GLU HXT H N N 316 GLY N N N N 317 GLY CA C N N 318 GLY C C N N 319 GLY O O N N 320 GLY OXT O N N 321 GLY H H N N 322 GLY H2 H N N 323 GLY HA2 H N N 324 GLY HA3 H N N 325 GLY HXT H N N 326 HIS N N N N 327 HIS CA C N S 328 HIS C C N N 329 HIS O O N N 330 HIS CB C N N 331 HIS CG C Y N 332 HIS ND1 N Y N 333 HIS CD2 C Y N 334 HIS CE1 C Y N 335 HIS NE2 N Y N 336 HIS OXT O N N 337 HIS H H N N 338 HIS H2 H N N 339 HIS HA H N N 340 HIS HB2 H N N 341 HIS HB3 H N N 342 HIS HD1 H N N 343 HIS HD2 H N N 344 HIS HE1 H N N 345 HIS HE2 H N N 346 HIS HXT H N N 347 HOH O O N N 348 HOH H1 H N N 349 HOH H2 H N N 350 ILE N N N N 351 ILE CA C N S 352 ILE C C N N 353 ILE O O N N 354 ILE CB C N S 355 ILE CG1 C N N 356 ILE CG2 C N N 357 ILE CD1 C N N 358 ILE OXT O N N 359 ILE H H N N 360 ILE H2 H N N 361 ILE HA H N N 362 ILE HB H N N 363 ILE HG12 H N N 364 ILE HG13 H N N 365 ILE HG21 H N N 366 ILE HG22 H N N 367 ILE HG23 H N N 368 ILE HD11 H N N 369 ILE HD12 H N N 370 ILE HD13 H N N 371 ILE HXT H N N 372 LEU N N N N 373 LEU CA C N S 374 LEU C C N N 375 LEU O O N N 376 LEU CB C N N 377 LEU CG C N N 378 LEU CD1 C N N 379 LEU CD2 C N N 380 LEU OXT O N N 381 LEU H H N N 382 LEU H2 H N N 383 LEU HA H N N 384 LEU HB2 H N N 385 LEU HB3 H N N 386 LEU HG H N N 387 LEU HD11 H N N 388 LEU HD12 H N N 389 LEU HD13 H N N 390 LEU HD21 H N N 391 LEU HD22 H N N 392 LEU HD23 H N N 393 LEU HXT H N N 394 LYS N N N N 395 LYS CA C N S 396 LYS C C N N 397 LYS O O N N 398 LYS CB C N N 399 LYS CG C N N 400 LYS CD C N N 401 LYS CE C N N 402 LYS NZ N N N 403 LYS OXT O N N 404 LYS H H N N 405 LYS H2 H N N 406 LYS HA H N N 407 LYS HB2 H N N 408 LYS HB3 H N N 409 LYS HG2 H N N 410 LYS HG3 H N N 411 LYS HD2 H N N 412 LYS HD3 H N N 413 LYS HE2 H N N 414 LYS HE3 H N N 415 LYS HZ1 H N N 416 LYS HZ2 H N N 417 LYS HZ3 H N N 418 LYS HXT H N N 419 MET N N N N 420 MET CA C N S 421 MET C C N N 422 MET O O N N 423 MET CB C N N 424 MET CG C N N 425 MET SD S N N 426 MET CE C N N 427 MET OXT O N N 428 MET H H N N 429 MET H2 H N N 430 MET HA H N N 431 MET HB2 H N N 432 MET HB3 H N N 433 MET HG2 H N N 434 MET HG3 H N N 435 MET HE1 H N N 436 MET HE2 H N N 437 MET HE3 H N N 438 MET HXT H N N 439 PHE N N N N 440 PHE CA C N S 441 PHE C C N N 442 PHE O O N N 443 PHE CB C N N 444 PHE CG C Y N 445 PHE CD1 C Y N 446 PHE CD2 C Y N 447 PHE CE1 C Y N 448 PHE CE2 C Y N 449 PHE CZ C Y N 450 PHE OXT O N N 451 PHE H H N N 452 PHE H2 H N N 453 PHE HA H N N 454 PHE HB2 H N N 455 PHE HB3 H N N 456 PHE HD1 H N N 457 PHE HD2 H N N 458 PHE HE1 H N N 459 PHE HE2 H N N 460 PHE HZ H N N 461 PHE HXT H N N 462 PRO N N N N 463 PRO CA C N S 464 PRO C C N N 465 PRO O O N N 466 PRO CB C N N 467 PRO CG C N N 468 PRO CD C N N 469 PRO OXT O N N 470 PRO H H N N 471 PRO HA H N N 472 PRO HB2 H N N 473 PRO HB3 H N N 474 PRO HG2 H N N 475 PRO HG3 H N N 476 PRO HD2 H N N 477 PRO HD3 H N N 478 PRO HXT H N N 479 SER N N N N 480 SER CA C N S 481 SER C C N N 482 SER O O N N 483 SER CB C N N 484 SER OG O N N 485 SER OXT O N N 486 SER H H N N 487 SER H2 H N N 488 SER HA H N N 489 SER HB2 H N N 490 SER HB3 H N N 491 SER HG H N N 492 SER HXT H N N 493 THR N N N N 494 THR CA C N S 495 THR C C N N 496 THR O O N N 497 THR CB C N R 498 THR OG1 O N N 499 THR CG2 C N N 500 THR OXT O N N 501 THR H H N N 502 THR H2 H N N 503 THR HA H N N 504 THR HB H N N 505 THR HG1 H N N 506 THR HG21 H N N 507 THR HG22 H N N 508 THR HG23 H N N 509 THR HXT H N N 510 TYR N N N N 511 TYR CA C N S 512 TYR C C N N 513 TYR O O N N 514 TYR CB C N N 515 TYR CG C Y N 516 TYR CD1 C Y N 517 TYR CD2 C Y N 518 TYR CE1 C Y N 519 TYR CE2 C Y N 520 TYR CZ C Y N 521 TYR OH O N N 522 TYR OXT O N N 523 TYR H H N N 524 TYR H2 H N N 525 TYR HA H N N 526 TYR HB2 H N N 527 TYR HB3 H N N 528 TYR HD1 H N N 529 TYR HD2 H N N 530 TYR HE1 H N N 531 TYR HE2 H N N 532 TYR HH H N N 533 TYR HXT H N N 534 VAL N N N N 535 VAL CA C N S 536 VAL C C N N 537 VAL O O N N 538 VAL CB C N N 539 VAL CG1 C N N 540 VAL CG2 C N N 541 VAL OXT O N N 542 VAL H H N N 543 VAL H2 H N N 544 VAL HA H N N 545 VAL HB H N N 546 VAL HG11 H N N 547 VAL HG12 H N N 548 VAL HG13 H N N 549 VAL HG21 H N N 550 VAL HG22 H N N 551 VAL HG23 H N N 552 VAL HXT H N N 553 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DG3 PG O1G doub N N 195 DG3 PG O2G sing N N 196 DG3 PG O3G sing N N 197 DG3 PG O3B sing N N 198 DG3 O2G HOG2 sing N N 199 DG3 O3G HOG3 sing N N 200 DG3 O3B PB sing N N 201 DG3 PB O1B doub N N 202 DG3 PB O2B sing N N 203 DG3 PB O3A sing N N 204 DG3 O2B HOB2 sing N N 205 DG3 O3A PA sing N N 206 DG3 PA O1A doub N N 207 DG3 PA O2A sing N N 208 DG3 PA "O5'" sing N N 209 DG3 O2A HOA2 sing N N 210 DG3 "O5'" "C5'" sing N N 211 DG3 "C5'" "C4'" sing N N 212 DG3 "C5'" "H5'1" sing N N 213 DG3 "C5'" "H5'2" sing N N 214 DG3 "C4'" "O4'" sing N N 215 DG3 "C4'" "C3'" sing N N 216 DG3 "C4'" "H4'" sing N N 217 DG3 "O4'" "C1'" sing N N 218 DG3 "C3'" "C2'" sing N N 219 DG3 "C3'" "H3'1" sing N N 220 DG3 "C3'" "H3'2" sing N N 221 DG3 "C2'" "C1'" sing N N 222 DG3 "C2'" "H2'1" sing N N 223 DG3 "C2'" "H2'2" sing N N 224 DG3 "C1'" N9 sing N N 225 DG3 "C1'" "H1'" sing N N 226 DG3 N9 C8 sing Y N 227 DG3 N9 C4 sing Y N 228 DG3 C8 N7 doub Y N 229 DG3 C8 H8 sing N N 230 DG3 N7 C5 sing Y N 231 DG3 C5 C6 sing N N 232 DG3 C5 C4 doub Y N 233 DG3 C6 O6 doub N N 234 DG3 C6 N1 sing N N 235 DG3 N1 C2 sing N N 236 DG3 N1 HN1 sing N N 237 DG3 C2 N2 sing N N 238 DG3 C2 N3 doub N N 239 DG3 N2 HN21 sing N N 240 DG3 N2 HN22 sing N N 241 DG3 N3 C4 sing N N 242 DT OP3 P sing N N 243 DT OP3 HOP3 sing N N 244 DT P OP1 doub N N 245 DT P OP2 sing N N 246 DT P "O5'" sing N N 247 DT OP2 HOP2 sing N N 248 DT "O5'" "C5'" sing N N 249 DT "C5'" "C4'" sing N N 250 DT "C5'" "H5'" sing N N 251 DT "C5'" "H5''" sing N N 252 DT "C4'" "O4'" sing N N 253 DT "C4'" "C3'" sing N N 254 DT "C4'" "H4'" sing N N 255 DT "O4'" "C1'" sing N N 256 DT "C3'" "O3'" sing N N 257 DT "C3'" "C2'" sing N N 258 DT "C3'" "H3'" sing N N 259 DT "O3'" "HO3'" sing N N 260 DT "C2'" "C1'" sing N N 261 DT "C2'" "H2'" sing N N 262 DT "C2'" "H2''" sing N N 263 DT "C1'" N1 sing N N 264 DT "C1'" "H1'" sing N N 265 DT N1 C2 sing N N 266 DT N1 C6 sing N N 267 DT C2 O2 doub N N 268 DT C2 N3 sing N N 269 DT N3 C4 sing N N 270 DT N3 H3 sing N N 271 DT C4 O4 doub N N 272 DT C4 C5 sing N N 273 DT C5 C7 sing N N 274 DT C5 C6 doub N N 275 DT C7 H71 sing N N 276 DT C7 H72 sing N N 277 DT C7 H73 sing N N 278 DT C6 H6 sing N N 279 GLN N CA sing N N 280 GLN N H sing N N 281 GLN N H2 sing N N 282 GLN CA C sing N N 283 GLN CA CB sing N N 284 GLN CA HA sing N N 285 GLN C O doub N N 286 GLN C OXT sing N N 287 GLN CB CG sing N N 288 GLN CB HB2 sing N N 289 GLN CB HB3 sing N N 290 GLN CG CD sing N N 291 GLN CG HG2 sing N N 292 GLN CG HG3 sing N N 293 GLN CD OE1 doub N N 294 GLN CD NE2 sing N N 295 GLN NE2 HE21 sing N N 296 GLN NE2 HE22 sing N N 297 GLN OXT HXT sing N N 298 GLU N CA sing N N 299 GLU N H sing N N 300 GLU N H2 sing N N 301 GLU CA C sing N N 302 GLU CA CB sing N N 303 GLU CA HA sing N N 304 GLU C O doub N N 305 GLU C OXT sing N N 306 GLU CB CG sing N N 307 GLU CB HB2 sing N N 308 GLU CB HB3 sing N N 309 GLU CG CD sing N N 310 GLU CG HG2 sing N N 311 GLU CG HG3 sing N N 312 GLU CD OE1 doub N N 313 GLU CD OE2 sing N N 314 GLU OE2 HE2 sing N N 315 GLU OXT HXT sing N N 316 GLY N CA sing N N 317 GLY N H sing N N 318 GLY N H2 sing N N 319 GLY CA C sing N N 320 GLY CA HA2 sing N N 321 GLY CA HA3 sing N N 322 GLY C O doub N N 323 GLY C OXT sing N N 324 GLY OXT HXT sing N N 325 HIS N CA sing N N 326 HIS N H sing N N 327 HIS N H2 sing N N 328 HIS CA C sing N N 329 HIS CA CB sing N N 330 HIS CA HA sing N N 331 HIS C O doub N N 332 HIS C OXT sing N N 333 HIS CB CG sing N N 334 HIS CB HB2 sing N N 335 HIS CB HB3 sing N N 336 HIS CG ND1 sing Y N 337 HIS CG CD2 doub Y N 338 HIS ND1 CE1 doub Y N 339 HIS ND1 HD1 sing N N 340 HIS CD2 NE2 sing Y N 341 HIS CD2 HD2 sing N N 342 HIS CE1 NE2 sing Y N 343 HIS CE1 HE1 sing N N 344 HIS NE2 HE2 sing N N 345 HIS OXT HXT sing N N 346 HOH O H1 sing N N 347 HOH O H2 sing N N 348 ILE N CA sing N N 349 ILE N H sing N N 350 ILE N H2 sing N N 351 ILE CA C sing N N 352 ILE CA CB sing N N 353 ILE CA HA sing N N 354 ILE C O doub N N 355 ILE C OXT sing N N 356 ILE CB CG1 sing N N 357 ILE CB CG2 sing N N 358 ILE CB HB sing N N 359 ILE CG1 CD1 sing N N 360 ILE CG1 HG12 sing N N 361 ILE CG1 HG13 sing N N 362 ILE CG2 HG21 sing N N 363 ILE CG2 HG22 sing N N 364 ILE CG2 HG23 sing N N 365 ILE CD1 HD11 sing N N 366 ILE CD1 HD12 sing N N 367 ILE CD1 HD13 sing N N 368 ILE OXT HXT sing N N 369 LEU N CA sing N N 370 LEU N H sing N N 371 LEU N H2 sing N N 372 LEU CA C sing N N 373 LEU CA CB sing N N 374 LEU CA HA sing N N 375 LEU C O doub N N 376 LEU C OXT sing N N 377 LEU CB CG sing N N 378 LEU CB HB2 sing N N 379 LEU CB HB3 sing N N 380 LEU CG CD1 sing N N 381 LEU CG CD2 sing N N 382 LEU CG HG sing N N 383 LEU CD1 HD11 sing N N 384 LEU CD1 HD12 sing N N 385 LEU CD1 HD13 sing N N 386 LEU CD2 HD21 sing N N 387 LEU CD2 HD22 sing N N 388 LEU CD2 HD23 sing N N 389 LEU OXT HXT sing N N 390 LYS N CA sing N N 391 LYS N H sing N N 392 LYS N H2 sing N N 393 LYS CA C sing N N 394 LYS CA CB sing N N 395 LYS CA HA sing N N 396 LYS C O doub N N 397 LYS C OXT sing N N 398 LYS CB CG sing N N 399 LYS CB HB2 sing N N 400 LYS CB HB3 sing N N 401 LYS CG CD sing N N 402 LYS CG HG2 sing N N 403 LYS CG HG3 sing N N 404 LYS CD CE sing N N 405 LYS CD HD2 sing N N 406 LYS CD HD3 sing N N 407 LYS CE NZ sing N N 408 LYS CE HE2 sing N N 409 LYS CE HE3 sing N N 410 LYS NZ HZ1 sing N N 411 LYS NZ HZ2 sing N N 412 LYS NZ HZ3 sing N N 413 LYS OXT HXT sing N N 414 MET N CA sing N N 415 MET N H sing N N 416 MET N H2 sing N N 417 MET CA C sing N N 418 MET CA CB sing N N 419 MET CA HA sing N N 420 MET C O doub N N 421 MET C OXT sing N N 422 MET CB CG sing N N 423 MET CB HB2 sing N N 424 MET CB HB3 sing N N 425 MET CG SD sing N N 426 MET CG HG2 sing N N 427 MET CG HG3 sing N N 428 MET SD CE sing N N 429 MET CE HE1 sing N N 430 MET CE HE2 sing N N 431 MET CE HE3 sing N N 432 MET OXT HXT sing N N 433 PHE N CA sing N N 434 PHE N H sing N N 435 PHE N H2 sing N N 436 PHE CA C sing N N 437 PHE CA CB sing N N 438 PHE CA HA sing N N 439 PHE C O doub N N 440 PHE C OXT sing N N 441 PHE CB CG sing N N 442 PHE CB HB2 sing N N 443 PHE CB HB3 sing N N 444 PHE CG CD1 doub Y N 445 PHE CG CD2 sing Y N 446 PHE CD1 CE1 sing Y N 447 PHE CD1 HD1 sing N N 448 PHE CD2 CE2 doub Y N 449 PHE CD2 HD2 sing N N 450 PHE CE1 CZ doub Y N 451 PHE CE1 HE1 sing N N 452 PHE CE2 CZ sing Y N 453 PHE CE2 HE2 sing N N 454 PHE CZ HZ sing N N 455 PHE OXT HXT sing N N 456 PRO N CA sing N N 457 PRO N CD sing N N 458 PRO N H sing N N 459 PRO CA C sing N N 460 PRO CA CB sing N N 461 PRO CA HA sing N N 462 PRO C O doub N N 463 PRO C OXT sing N N 464 PRO CB CG sing N N 465 PRO CB HB2 sing N N 466 PRO CB HB3 sing N N 467 PRO CG CD sing N N 468 PRO CG HG2 sing N N 469 PRO CG HG3 sing N N 470 PRO CD HD2 sing N N 471 PRO CD HD3 sing N N 472 PRO OXT HXT sing N N 473 SER N CA sing N N 474 SER N H sing N N 475 SER N H2 sing N N 476 SER CA C sing N N 477 SER CA CB sing N N 478 SER CA HA sing N N 479 SER C O doub N N 480 SER C OXT sing N N 481 SER CB OG sing N N 482 SER CB HB2 sing N N 483 SER CB HB3 sing N N 484 SER OG HG sing N N 485 SER OXT HXT sing N N 486 THR N CA sing N N 487 THR N H sing N N 488 THR N H2 sing N N 489 THR CA C sing N N 490 THR CA CB sing N N 491 THR CA HA sing N N 492 THR C O doub N N 493 THR C OXT sing N N 494 THR CB OG1 sing N N 495 THR CB CG2 sing N N 496 THR CB HB sing N N 497 THR OG1 HG1 sing N N 498 THR CG2 HG21 sing N N 499 THR CG2 HG22 sing N N 500 THR CG2 HG23 sing N N 501 THR OXT HXT sing N N 502 TYR N CA sing N N 503 TYR N H sing N N 504 TYR N H2 sing N N 505 TYR CA C sing N N 506 TYR CA CB sing N N 507 TYR CA HA sing N N 508 TYR C O doub N N 509 TYR C OXT sing N N 510 TYR CB CG sing N N 511 TYR CB HB2 sing N N 512 TYR CB HB3 sing N N 513 TYR CG CD1 doub Y N 514 TYR CG CD2 sing Y N 515 TYR CD1 CE1 sing Y N 516 TYR CD1 HD1 sing N N 517 TYR CD2 CE2 doub Y N 518 TYR CD2 HD2 sing N N 519 TYR CE1 CZ doub Y N 520 TYR CE1 HE1 sing N N 521 TYR CE2 CZ sing Y N 522 TYR CE2 HE2 sing N N 523 TYR CZ OH sing N N 524 TYR OH HH sing N N 525 TYR OXT HXT sing N N 526 VAL N CA sing N N 527 VAL N H sing N N 528 VAL N H2 sing N N 529 VAL CA C sing N N 530 VAL CA CB sing N N 531 VAL CA HA sing N N 532 VAL C O doub N N 533 VAL C OXT sing N N 534 VAL CB CG1 sing N N 535 VAL CB CG2 sing N N 536 VAL CB HB sing N N 537 VAL CG1 HG11 sing N N 538 VAL CG1 HG12 sing N N 539 VAL CG1 HG13 sing N N 540 VAL CG2 HG21 sing N N 541 VAL CG2 HG22 sing N N 542 VAL CG2 HG23 sing N N 543 VAL OXT HXT sing N N 544 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BQ1 'b-form double helix' 3BQ1 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 14 1_555 -0.417 -0.088 -0.136 -4.632 -3.636 0.116 1 P_DG1:DC14_T P 1 ? T 14 ? 19 1 1 A DA 2 1_555 B DT 13 1_555 -0.299 -0.311 -0.063 2.930 -5.578 0.055 2 P_DA2:DT13_T P 2 ? T 13 ? 20 1 1 A DA 3 1_555 B DT 12 1_555 0.141 0.016 0.197 10.279 -14.569 -10.112 3 P_DA3:DT12_T P 3 ? T 12 ? 20 1 1 A DG 4 1_555 B DC 11 1_555 0.076 0.075 0.202 5.059 -9.170 -0.974 4 P_DG4:DC11_T P 4 ? T 11 ? 19 1 1 A DC 5 1_555 B DG 10 1_555 -0.138 -0.066 0.007 -1.542 -13.876 -4.291 5 P_DC5:DG10_T P 5 ? T 10 ? 19 1 1 A DC 6 1_555 B DG 9 1_555 0.370 -0.059 0.464 -9.902 -10.002 -0.345 6 P_DC6:DG9_T P 6 ? T 9 ? 19 1 1 A DG 7 1_555 B DC 8 1_555 -0.317 -0.111 -0.183 -2.043 -7.858 -9.455 7 P_DG7:DC8_T P 7 ? T 8 ? 19 1 1 A DG 8 1_555 B DC 7 1_555 0.312 -0.153 -0.070 -2.038 -15.737 -2.280 8 P_DG8:DC7_T P 8 ? T 7 ? 19 1 1 A DC 9 1_555 B DG 5 1_555 0.221 -0.175 0.140 -6.023 -14.769 -2.163 9 P_DC9:DG5_T P 9 ? T 5 ? 19 1 1 A DG 10 1_555 B DC 4 1_555 0.275 0.147 0.503 2.801 -13.121 1.546 10 P_DG10:DC4_T P 10 ? T 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 14 1_555 A DA 2 1_555 B DT 13 1_555 0.107 -0.046 3.093 -1.844 6.161 31.313 -1.137 -0.510 3.018 11.265 3.371 31.950 1 PP_DG1DA2:DT13DC14_TT P 1 ? T 14 ? P 2 ? T 13 ? 1 A DA 2 1_555 B DT 13 1_555 A DA 3 1_555 B DT 12 1_555 -1.513 -0.010 3.157 -5.350 -0.977 39.730 0.097 1.600 3.324 -1.429 7.827 40.085 2 PP_DA2DA3:DT12DT13_TT P 2 ? T 13 ? P 3 ? T 12 ? 1 A DA 3 1_555 B DT 12 1_555 A DG 4 1_555 B DC 11 1_555 0.503 -0.301 3.464 -0.560 1.914 32.392 -0.893 -1.004 3.432 3.427 1.003 32.451 3 PP_DA3DG4:DC11DT12_TT P 3 ? T 12 ? P 4 ? T 11 ? 1 A DG 4 1_555 B DC 11 1_555 A DC 5 1_555 B DG 10 1_555 -0.615 -0.311 3.364 0.120 2.106 32.324 -0.938 1.124 3.335 3.777 -0.215 32.391 4 PP_DG4DC5:DG10DC11_TT P 4 ? T 11 ? P 5 ? T 10 ? 1 A DC 5 1_555 B DG 10 1_555 A DC 6 1_555 B DG 9 1_555 0.625 -0.079 3.532 0.221 4.993 38.419 -0.779 -0.913 3.499 7.548 -0.334 38.730 5 PP_DC5DC6:DG9DG10_TT P 5 ? T 10 ? P 6 ? T 9 ? 1 A DC 6 1_555 B DG 9 1_555 A DG 7 1_555 B DC 8 1_555 -0.384 0.507 3.201 3.088 3.435 34.232 0.333 1.115 3.190 5.803 -5.217 34.533 6 PP_DC6DG7:DC8DG9_TT P 6 ? T 9 ? P 7 ? T 8 ? 1 A DG 7 1_555 B DC 8 1_555 A DG 8 1_555 B DC 7 1_555 0.518 -0.257 3.414 -2.773 7.207 36.737 -1.372 -1.180 3.261 11.281 4.341 37.512 7 PP_DG7DG8:DC7DC8_TT P 7 ? T 8 ? P 8 ? T 7 ? 1 A DG 8 1_555 B DC 7 1_555 A DC 9 1_555 B DG 5 1_555 -0.733 -0.626 3.274 -2.811 4.257 26.551 -2.419 0.855 3.195 9.162 6.050 27.028 8 PP_DG8DC9:DG5DC7_TT P 8 ? T 7 ? P 9 ? T 5 ? 1 A DC 9 1_555 B DG 5 1_555 A DG 10 1_555 B DC 4 1_555 -0.016 0.794 3.163 -3.040 3.166 39.214 0.812 -0.327 3.208 4.699 4.512 39.449 9 PP_DC9DG10:DC4DG5_TT P 9 ? T 5 ? P 10 ? T 4 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" DG3 5 'CALCIUM ION' CA 6 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1IM4 'PDB entries 1IM4 and 1K1Q' 2 ? 'experimental model' PDB 1K1Q 'PDB entries 1IM4 and 1K1Q' #