data_3BQ2 # _entry.id 3BQ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BQ2 pdb_00003bq2 10.2210/pdb3bq2/pdb NDB PD1065 ? ? RCSB RCSB045825 ? ? WWPDB D_1000045825 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BQ0 'Pre-insertion binary complex of Dbh' unspecified PDB 3BQ1 'Insertion ternary complex of Dbh' unspecified # _pdbx_database_status.entry_id 3BQ2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pata, J.D.' 1 'Wilson, R.C.' 2 # _citation.id primary _citation.title 'Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 29 _citation.page_first 767 _citation.page_last 779 _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18374650 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2008.01.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilson, R.C.' 1 ? primary 'Pata, J.D.' 2 ? # _cell.entry_id 3BQ2 _cell.length_a 120.338 _cell.length_b 120.338 _cell.length_c 68.325 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BQ2 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DGP*DG)-3') ; 3424.236 1 ? ? ? primer 2 polymer syn ;DNA (5'-D(*DTP*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3') ; 4472.885 1 ? ? ? template 3 polymer man 'DNA polymerase IV' 40045.836 1 2.7.7.7 ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Pol IV, Dbh' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DG)(DC)(DC)(DG)(DG)(DC)(DG)(DG)' GAAGCCGGCGG P ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DC)(DG)(DG)(DC)(DT)(DT)(DC)(DC)' TTCCGCCCGGCTTCC T ? 3 'polypeptide(L)' no no ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DG n 1 9 DC n 1 10 DG n 1 11 DG n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DG n 2 11 DC n 2 12 DT n 2 13 DT n 2 14 DC n 2 15 DC n 3 1 MET n 3 2 ILE n 3 3 VAL n 3 4 ILE n 3 5 PHE n 3 6 VAL n 3 7 ASP n 3 8 PHE n 3 9 ASP n 3 10 TYR n 3 11 PHE n 3 12 PHE n 3 13 ALA n 3 14 GLN n 3 15 VAL n 3 16 GLU n 3 17 GLU n 3 18 VAL n 3 19 LEU n 3 20 ASN n 3 21 PRO n 3 22 GLN n 3 23 TYR n 3 24 LYS n 3 25 GLY n 3 26 LYS n 3 27 PRO n 3 28 LEU n 3 29 VAL n 3 30 VAL n 3 31 CYS n 3 32 VAL n 3 33 TYR n 3 34 SER n 3 35 GLY n 3 36 ARG n 3 37 THR n 3 38 LYS n 3 39 THR n 3 40 SER n 3 41 GLY n 3 42 ALA n 3 43 VAL n 3 44 ALA n 3 45 THR n 3 46 ALA n 3 47 ASN n 3 48 TYR n 3 49 GLU n 3 50 ALA n 3 51 ARG n 3 52 LYS n 3 53 LEU n 3 54 GLY n 3 55 VAL n 3 56 LYS n 3 57 ALA n 3 58 GLY n 3 59 MET n 3 60 PRO n 3 61 ILE n 3 62 ILE n 3 63 LYS n 3 64 ALA n 3 65 MET n 3 66 GLN n 3 67 ILE n 3 68 ALA n 3 69 PRO n 3 70 SER n 3 71 ALA n 3 72 ILE n 3 73 TYR n 3 74 VAL n 3 75 PRO n 3 76 MET n 3 77 ARG n 3 78 LYS n 3 79 PRO n 3 80 ILE n 3 81 TYR n 3 82 GLU n 3 83 ALA n 3 84 PHE n 3 85 SER n 3 86 ASN n 3 87 ARG n 3 88 ILE n 3 89 MET n 3 90 ASN n 3 91 LEU n 3 92 LEU n 3 93 ASN n 3 94 LYS n 3 95 HIS n 3 96 ALA n 3 97 ASP n 3 98 LYS n 3 99 ILE n 3 100 GLU n 3 101 VAL n 3 102 ALA n 3 103 SER n 3 104 ILE n 3 105 ASP n 3 106 GLU n 3 107 ALA n 3 108 TYR n 3 109 LEU n 3 110 ASP n 3 111 VAL n 3 112 THR n 3 113 ASN n 3 114 LYS n 3 115 VAL n 3 116 GLU n 3 117 GLY n 3 118 ASN n 3 119 PHE n 3 120 GLU n 3 121 ASN n 3 122 GLY n 3 123 ILE n 3 124 GLU n 3 125 LEU n 3 126 ALA n 3 127 ARG n 3 128 LYS n 3 129 ILE n 3 130 LYS n 3 131 GLN n 3 132 GLU n 3 133 ILE n 3 134 LEU n 3 135 GLU n 3 136 LYS n 3 137 GLU n 3 138 LYS n 3 139 ILE n 3 140 THR n 3 141 VAL n 3 142 THR n 3 143 VAL n 3 144 GLY n 3 145 VAL n 3 146 ALA n 3 147 PRO n 3 148 ASN n 3 149 LYS n 3 150 ILE n 3 151 LEU n 3 152 ALA n 3 153 LYS n 3 154 ILE n 3 155 ILE n 3 156 ALA n 3 157 ASP n 3 158 LYS n 3 159 SER n 3 160 LYS n 3 161 PRO n 3 162 ASN n 3 163 GLY n 3 164 LEU n 3 165 GLY n 3 166 VAL n 3 167 ILE n 3 168 ARG n 3 169 PRO n 3 170 THR n 3 171 GLU n 3 172 VAL n 3 173 GLN n 3 174 ASP n 3 175 PHE n 3 176 LEU n 3 177 ASN n 3 178 GLU n 3 179 LEU n 3 180 ASP n 3 181 ILE n 3 182 ASP n 3 183 GLU n 3 184 ILE n 3 185 PRO n 3 186 GLY n 3 187 ILE n 3 188 GLY n 3 189 SER n 3 190 VAL n 3 191 LEU n 3 192 ALA n 3 193 ARG n 3 194 ARG n 3 195 LEU n 3 196 ASN n 3 197 GLU n 3 198 LEU n 3 199 GLY n 3 200 ILE n 3 201 GLN n 3 202 LYS n 3 203 LEU n 3 204 ARG n 3 205 ASP n 3 206 ILE n 3 207 LEU n 3 208 SER n 3 209 LYS n 3 210 ASN n 3 211 TYR n 3 212 ASN n 3 213 GLU n 3 214 LEU n 3 215 GLU n 3 216 LYS n 3 217 ILE n 3 218 THR n 3 219 GLY n 3 220 LYS n 3 221 ALA n 3 222 LYS n 3 223 ALA n 3 224 LEU n 3 225 TYR n 3 226 LEU n 3 227 LEU n 3 228 LYS n 3 229 LEU n 3 230 ALA n 3 231 GLN n 3 232 ASN n 3 233 LYS n 3 234 TYR n 3 235 SER n 3 236 GLU n 3 237 PRO n 3 238 VAL n 3 239 GLU n 3 240 ASN n 3 241 LYS n 3 242 SER n 3 243 LYS n 3 244 ILE n 3 245 PRO n 3 246 HIS n 3 247 GLY n 3 248 ARG n 3 249 TYR n 3 250 LEU n 3 251 THR n 3 252 LEU n 3 253 PRO n 3 254 TYR n 3 255 ASN n 3 256 THR n 3 257 ARG n 3 258 ASP n 3 259 VAL n 3 260 LYS n 3 261 VAL n 3 262 ILE n 3 263 LEU n 3 264 PRO n 3 265 TYR n 3 266 LEU n 3 267 LYS n 3 268 LYS n 3 269 ALA n 3 270 ILE n 3 271 ASN n 3 272 GLU n 3 273 ALA n 3 274 TYR n 3 275 ASN n 3 276 LYS n 3 277 VAL n 3 278 ASN n 3 279 GLY n 3 280 ILE n 3 281 PRO n 3 282 MET n 3 283 ARG n 3 284 ILE n 3 285 THR n 3 286 VAL n 3 287 ILE n 3 288 ALA n 3 289 ILE n 3 290 MET n 3 291 GLU n 3 292 ASP n 3 293 LEU n 3 294 ASP n 3 295 ILE n 3 296 LEU n 3 297 SER n 3 298 LYS n 3 299 GLY n 3 300 LYS n 3 301 LYS n 3 302 PHE n 3 303 LYS n 3 304 HIS n 3 305 GLY n 3 306 ILE n 3 307 SER n 3 308 ILE n 3 309 ASP n 3 310 ASN n 3 311 ALA n 3 312 TYR n 3 313 LYS n 3 314 VAL n 3 315 ALA n 3 316 GLU n 3 317 ASP n 3 318 LEU n 3 319 LEU n 3 320 ARG n 3 321 GLU n 3 322 LEU n 3 323 LEU n 3 324 VAL n 3 325 ARG n 3 326 ASP n 3 327 LYS n 3 328 ARG n 3 329 ARG n 3 330 ASN n 3 331 VAL n 3 332 ARG n 3 333 ARG n 3 334 ILE n 3 335 GLY n 3 336 VAL n 3 337 LYS n 3 338 LEU n 3 339 ASP n 3 340 ASN n 3 341 ILE n 3 342 ILE n 3 343 ILE n 3 344 ASN n 3 345 LYS n 3 346 THR n 3 347 ASN n 3 348 LEU n 3 349 SER n 3 350 ASP n 3 351 PHE n 3 352 PHE n 3 353 ASP n 3 354 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene dbh _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BLR(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKKT7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO4_SULAC Q4JB80 3 ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; 1 ? 2 PDB 3BQ2 3BQ2 1 GAAGCCGGCGG 1 ? 3 PDB 3BQ2 3BQ2 2 TTCCGCCCGGCTTCC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BQ2 A 1 ? 354 ? Q4JB80 1 ? 354 ? 1 354 2 2 3BQ2 P 1 ? 11 ? 3BQ2 1 ? 11 ? 1 11 3 3 3BQ2 T 1 ? 15 ? 3BQ2 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BQ2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details 'PEG-3350, calcium acetate, glycerol, HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 PEG-3350 ? ? ? 1 2 2 PEG-3350 ? ? ? 1 3 1 'calcium acetate' ? ? ? 1 4 1 'calcium acetate' ? ? ? 1 5 1 glycerol ? ? ? 1 6 2 glycerol ? ? ? 1 7 1 HEPES ? ? ? 1 8 2 HEPES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-07-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3BQ2 _reflns.observed_criterion_sigma_I -0.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 2.70 _reflns.number_obs 13596 _reflns.number_all ? _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 91.9 _reflns_shell.Rmerge_I_obs 0.444 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BQ2 _refine.ls_number_reflns_obs 12802 _refine.ls_number_reflns_all 13461 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 94.62 _refine.ls_R_factor_obs 0.23704 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23437 _refine.ls_R_factor_R_free 0.28906 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 659 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.916 _refine.correlation_coeff_Fo_to_Fc_free 0.861 _refine.B_iso_mean 47.476 _refine.aniso_B[1][1] 2.34 _refine.aniso_B[2][2] 2.34 _refine.aniso_B[3][3] -4.67 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entries 1IM4 and 1K1Q' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.404 _refine.overall_SU_ML 0.366 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 38.190 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2704 _refine_hist.pdbx_number_atoms_nucleic_acid 466 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 3204 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 3265 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.328 2.173 ? 4498 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.083 5.000 ? 339 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.994 24.783 ? 115 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.592 15.000 ? 542 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.217 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 522 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2223 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.221 0.200 ? 1520 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 2142 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.161 0.200 ? 145 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.125 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.188 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.137 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.397 1.500 ? 1754 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.681 2.000 ? 2760 'X-RAY DIFFRACTION' ? r_scbond_it 0.832 3.000 ? 1867 'X-RAY DIFFRACTION' ? r_scangle_it 1.422 4.500 ? 1738 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.769 _refine_ls_shell.number_reflns_R_work 865 _refine_ls_shell.R_factor_R_work 0.369 _refine_ls_shell.percent_reflns_obs 91.57 _refine_ls_shell.R_factor_R_free 0.431 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BQ2 _struct.title 'Post-insertion binary complex of Dbh DNA polymerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BQ2 _struct_keywords.text ;DNA polymerase, Y-family, lesion bypass, single-base deletion, -1 frameshift, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase, TRANSFERASE-DNA complex ; _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR C 10 ? ASN C 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 PRO C 21 ? LYS C 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 3 ASN C 47 ? LEU C 53 ? ASN A 47 LEU A 53 1 ? 7 HELX_P HELX_P4 4 PRO C 60 ? ALA C 68 ? PRO A 60 ALA A 68 1 ? 9 HELX_P HELX_P5 5 ARG C 77 ? ALA C 96 ? ARG A 77 ALA A 96 1 ? 20 HELX_P HELX_P6 6 ASN C 118 ? LYS C 138 ? ASN A 118 LYS A 138 1 ? 21 HELX_P HELX_P7 7 ASN C 148 ? LYS C 158 ? ASN A 148 LYS A 158 1 ? 11 HELX_P HELX_P8 8 GLU C 171 ? LEU C 179 ? GLU A 171 LEU A 179 1 ? 9 HELX_P HELX_P9 9 ASP C 180 ? ILE C 184 ? ASP A 180 ILE A 184 5 ? 5 HELX_P HELX_P10 10 GLY C 188 ? ASN C 196 ? GLY A 188 ASN A 196 1 ? 9 HELX_P HELX_P11 11 GLU C 197 ? GLY C 199 ? GLU A 197 GLY A 199 5 ? 3 HELX_P HELX_P12 12 LEU C 203 ? SER C 208 ? LEU A 203 SER A 208 5 ? 6 HELX_P HELX_P13 13 TYR C 211 ? GLY C 219 ? TYR A 211 GLY A 219 1 ? 9 HELX_P HELX_P14 15 ASP C 258 ? GLU C 272 ? ASP A 258 GLU A 272 1 ? 15 HELX_P HELX_P15 16 SER C 307 ? ASP C 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C ASP 105 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 105 A CA 355 1_555 ? ? ? ? ? ? ? 2.684 ? ? metalc2 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 355 A HOH 356 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc3 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 355 A HOH 357 1_555 ? ? ? ? ? ? ? 2.951 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 14 N3 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 14 O2 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 14 N4 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 13 N3 ? ? P DA 2 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 13 O4 ? ? P DA 2 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 12 N3 ? ? P DA 3 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 12 O4 ? ? P DA 3 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 11 N3 ? ? P DG 4 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 11 O2 ? ? P DG 4 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 11 N4 ? ? P DG 4 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? P DC 5 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? P DC 5 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? P DC 5 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 9 N1 ? ? P DC 6 T DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 9 O6 ? ? P DC 6 T DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 9 N2 ? ? P DC 6 T DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 8 N3 ? ? P DG 7 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 8 O2 ? ? P DG 7 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 8 N4 ? ? P DG 7 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 7 O2 ? ? P DG 8 T DC 7 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 4 N3 ? ? P DG 10 T DC 4 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 3 N3 ? ? P DG 11 T DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 3 O2 ? ? P DG 11 T DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 3 N4 ? ? P DG 11 T DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 160 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 160 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 161 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 161 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.46 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU C 164 ? VAL C 166 ? LEU A 164 VAL A 166 A 2 VAL C 141 ? ALA C 146 ? VAL A 141 ALA A 146 A 3 VAL C 3 ? PHE C 8 ? VAL A 3 PHE A 8 A 4 GLU C 106 ? ASP C 110 ? GLU A 106 ASP A 110 A 5 LYS C 98 ? SER C 103 ? LYS A 98 SER A 103 A 6 LYS C 241 ? SER C 242 ? LYS A 241 SER A 242 A 7 VAL C 331 ? ILE C 342 ? VAL A 331 ILE A 342 A 8 HIS C 246 ? THR C 256 ? HIS A 246 THR A 256 B 1 LEU C 164 ? VAL C 166 ? LEU A 164 VAL A 166 B 2 VAL C 141 ? ALA C 146 ? VAL A 141 ALA A 146 B 3 VAL C 3 ? PHE C 8 ? VAL A 3 PHE A 8 B 4 GLU C 106 ? ASP C 110 ? GLU A 106 ASP A 110 B 5 LYS C 98 ? SER C 103 ? LYS A 98 SER A 103 B 6 LYS C 241 ? SER C 242 ? LYS A 241 SER A 242 B 7 VAL C 331 ? ILE C 342 ? VAL A 331 ILE A 342 B 8 ILE C 280 ? MET C 290 ? ILE A 280 MET A 290 C 1 GLY C 41 ? ALA C 46 ? GLY A 41 ALA A 46 C 2 LEU C 28 ? TYR C 33 ? LEU A 28 TYR A 33 C 3 ILE C 72 ? PRO C 75 ? ILE A 72 PRO A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY C 165 ? O GLY A 165 N VAL C 143 ? N VAL A 143 A 2 3 O THR C 142 ? O THR A 142 N ASP C 7 ? N ASP A 7 A 3 4 N VAL C 6 ? N VAL A 6 O ALA C 107 ? O ALA A 107 A 4 5 O TYR C 108 ? O TYR A 108 N GLU C 100 ? N GLU A 100 A 5 6 N VAL C 101 ? N VAL A 101 O LYS C 241 ? O LYS A 241 A 6 7 N SER C 242 ? N SER A 242 O ILE C 341 ? O ILE A 341 A 7 8 O LEU C 338 ? O LEU A 338 N HIS C 246 ? N HIS A 246 B 1 2 O GLY C 165 ? O GLY A 165 N VAL C 143 ? N VAL A 143 B 2 3 O THR C 142 ? O THR A 142 N ASP C 7 ? N ASP A 7 B 3 4 N VAL C 6 ? N VAL A 6 O ALA C 107 ? O ALA A 107 B 4 5 O TYR C 108 ? O TYR A 108 N GLU C 100 ? N GLU A 100 B 5 6 N VAL C 101 ? N VAL A 101 O LYS C 241 ? O LYS A 241 B 6 7 N SER C 242 ? N SER A 242 O ILE C 341 ? O ILE A 341 B 7 8 O GLY C 335 ? O GLY A 335 N ILE C 287 ? N ILE A 287 C 1 2 O ALA C 42 ? O ALA A 42 N VAL C 32 ? N VAL A 32 C 2 3 N VAL C 29 ? N VAL A 29 O ILE C 72 ? O ILE A 72 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 355 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 355' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id ASP _struct_site_gen.label_asym_id C _struct_site_gen.label_seq_id 105 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id ASP _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 105 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _atom_sites.entry_id 3BQ2 _atom_sites.fract_transf_matrix[1][1] 0.008310 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008310 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014636 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G P . n A 1 2 DA 2 2 2 DA A P . n A 1 3 DA 3 3 3 DA A P . n A 1 4 DG 4 4 4 DG G P . n A 1 5 DC 5 5 5 DC C P . n A 1 6 DC 6 6 6 DC C P . n A 1 7 DG 7 7 7 DG G P . n A 1 8 DG 8 8 8 DG G P . n A 1 9 DC 9 9 9 DC C P . n A 1 10 DG 10 10 10 DG G P . n A 1 11 DG 11 11 11 DG G P . n B 2 1 DT 1 1 ? ? ? T . n B 2 2 DT 2 2 ? ? ? T . n B 2 3 DC 3 3 3 DC C T . n B 2 4 DC 4 4 4 DC C T . n B 2 5 DG 5 5 5 DG G T . n B 2 6 DC 6 6 6 DC C T . n B 2 7 DC 7 7 7 DC C T . n B 2 8 DC 8 8 8 DC C T . n B 2 9 DG 9 9 9 DG G T . n B 2 10 DG 10 10 10 DG G T . n B 2 11 DC 11 11 11 DC C T . n B 2 12 DT 12 12 12 DT T T . n B 2 13 DT 13 13 13 DT T T . n B 2 14 DC 14 14 14 DC C T . n B 2 15 DC 15 15 ? ? ? T . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 VAL 3 3 3 VAL VAL A . n C 3 4 ILE 4 4 4 ILE ILE A . n C 3 5 PHE 5 5 5 PHE PHE A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 ASP 7 7 7 ASP ASP A . n C 3 8 PHE 8 8 8 PHE PHE A . n C 3 9 ASP 9 9 9 ASP ASP A . n C 3 10 TYR 10 10 10 TYR TYR A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 PHE 12 12 12 PHE PHE A . n C 3 13 ALA 13 13 13 ALA ALA A . n C 3 14 GLN 14 14 14 GLN GLN A . n C 3 15 VAL 15 15 15 VAL VAL A . n C 3 16 GLU 16 16 16 GLU GLU A . n C 3 17 GLU 17 17 17 GLU GLU A . n C 3 18 VAL 18 18 18 VAL VAL A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 ASN 20 20 20 ASN ASN A . n C 3 21 PRO 21 21 21 PRO PRO A . n C 3 22 GLN 22 22 22 GLN GLN A . n C 3 23 TYR 23 23 23 TYR TYR A . n C 3 24 LYS 24 24 24 LYS LYS A . n C 3 25 GLY 25 25 25 GLY GLY A . n C 3 26 LYS 26 26 26 LYS LYS A . n C 3 27 PRO 27 27 27 PRO PRO A . n C 3 28 LEU 28 28 28 LEU LEU A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 VAL 30 30 30 VAL VAL A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 VAL 32 32 32 VAL VAL A . n C 3 33 TYR 33 33 33 TYR TYR A . n C 3 34 SER 34 34 34 SER SER A . n C 3 35 GLY 35 35 35 GLY GLY A . n C 3 36 ARG 36 36 ? ? ? A . n C 3 37 THR 37 37 ? ? ? A . n C 3 38 LYS 38 38 ? ? ? A . n C 3 39 THR 39 39 39 THR THR A . n C 3 40 SER 40 40 40 SER SER A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 VAL 43 43 43 VAL VAL A . n C 3 44 ALA 44 44 44 ALA ALA A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 ALA 46 46 46 ALA ALA A . n C 3 47 ASN 47 47 47 ASN ASN A . n C 3 48 TYR 48 48 48 TYR TYR A . n C 3 49 GLU 49 49 49 GLU GLU A . n C 3 50 ALA 50 50 50 ALA ALA A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 LEU 53 53 53 LEU LEU A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 VAL 55 55 55 VAL VAL A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLY 58 58 58 GLY GLY A . n C 3 59 MET 59 59 59 MET MET A . n C 3 60 PRO 60 60 60 PRO PRO A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 ILE 62 62 62 ILE ILE A . n C 3 63 LYS 63 63 63 LYS LYS A . n C 3 64 ALA 64 64 64 ALA ALA A . n C 3 65 MET 65 65 65 MET MET A . n C 3 66 GLN 66 66 66 GLN GLN A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 ALA 68 68 68 ALA ALA A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 SER 70 70 70 SER SER A . n C 3 71 ALA 71 71 71 ALA ALA A . n C 3 72 ILE 72 72 72 ILE ILE A . n C 3 73 TYR 73 73 73 TYR TYR A . n C 3 74 VAL 74 74 74 VAL VAL A . n C 3 75 PRO 75 75 75 PRO PRO A . n C 3 76 MET 76 76 76 MET MET A . n C 3 77 ARG 77 77 77 ARG ARG A . n C 3 78 LYS 78 78 78 LYS LYS A . n C 3 79 PRO 79 79 79 PRO PRO A . n C 3 80 ILE 80 80 80 ILE ILE A . n C 3 81 TYR 81 81 81 TYR TYR A . n C 3 82 GLU 82 82 82 GLU GLU A . n C 3 83 ALA 83 83 83 ALA ALA A . n C 3 84 PHE 84 84 84 PHE PHE A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 ASN 86 86 86 ASN ASN A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 MET 89 89 89 MET MET A . n C 3 90 ASN 90 90 90 ASN ASN A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 LEU 92 92 92 LEU LEU A . n C 3 93 ASN 93 93 93 ASN ASN A . n C 3 94 LYS 94 94 94 LYS LYS A . n C 3 95 HIS 95 95 95 HIS HIS A . n C 3 96 ALA 96 96 96 ALA ALA A . n C 3 97 ASP 97 97 97 ASP ASP A . n C 3 98 LYS 98 98 98 LYS LYS A . n C 3 99 ILE 99 99 99 ILE ILE A . n C 3 100 GLU 100 100 100 GLU GLU A . n C 3 101 VAL 101 101 101 VAL VAL A . n C 3 102 ALA 102 102 102 ALA ALA A . n C 3 103 SER 103 103 103 SER SER A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ASP 105 105 105 ASP ASP A . n C 3 106 GLU 106 106 106 GLU GLU A . n C 3 107 ALA 107 107 107 ALA ALA A . n C 3 108 TYR 108 108 108 TYR TYR A . n C 3 109 LEU 109 109 109 LEU LEU A . n C 3 110 ASP 110 110 110 ASP ASP A . n C 3 111 VAL 111 111 111 VAL VAL A . n C 3 112 THR 112 112 112 THR THR A . n C 3 113 ASN 113 113 113 ASN ASN A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 GLU 116 116 116 GLU GLU A . n C 3 117 GLY 117 117 117 GLY GLY A . n C 3 118 ASN 118 118 118 ASN ASN A . n C 3 119 PHE 119 119 119 PHE PHE A . n C 3 120 GLU 120 120 120 GLU GLU A . n C 3 121 ASN 121 121 121 ASN ASN A . n C 3 122 GLY 122 122 122 GLY GLY A . n C 3 123 ILE 123 123 123 ILE ILE A . n C 3 124 GLU 124 124 124 GLU GLU A . n C 3 125 LEU 125 125 125 LEU LEU A . n C 3 126 ALA 126 126 126 ALA ALA A . n C 3 127 ARG 127 127 127 ARG ARG A . n C 3 128 LYS 128 128 128 LYS LYS A . n C 3 129 ILE 129 129 129 ILE ILE A . n C 3 130 LYS 130 130 130 LYS LYS A . n C 3 131 GLN 131 131 131 GLN GLN A . n C 3 132 GLU 132 132 132 GLU GLU A . n C 3 133 ILE 133 133 133 ILE ILE A . n C 3 134 LEU 134 134 134 LEU LEU A . n C 3 135 GLU 135 135 135 GLU GLU A . n C 3 136 LYS 136 136 136 LYS LYS A . n C 3 137 GLU 137 137 137 GLU GLU A . n C 3 138 LYS 138 138 138 LYS LYS A . n C 3 139 ILE 139 139 139 ILE ILE A . n C 3 140 THR 140 140 140 THR THR A . n C 3 141 VAL 141 141 141 VAL VAL A . n C 3 142 THR 142 142 142 THR THR A . n C 3 143 VAL 143 143 143 VAL VAL A . n C 3 144 GLY 144 144 144 GLY GLY A . n C 3 145 VAL 145 145 145 VAL VAL A . n C 3 146 ALA 146 146 146 ALA ALA A . n C 3 147 PRO 147 147 147 PRO PRO A . n C 3 148 ASN 148 148 148 ASN ASN A . n C 3 149 LYS 149 149 149 LYS LYS A . n C 3 150 ILE 150 150 150 ILE ILE A . n C 3 151 LEU 151 151 151 LEU LEU A . n C 3 152 ALA 152 152 152 ALA ALA A . n C 3 153 LYS 153 153 153 LYS LYS A . n C 3 154 ILE 154 154 154 ILE ILE A . n C 3 155 ILE 155 155 155 ILE ILE A . n C 3 156 ALA 156 156 156 ALA ALA A . n C 3 157 ASP 157 157 157 ASP ASP A . n C 3 158 LYS 158 158 158 LYS LYS A . n C 3 159 SER 159 159 159 SER SER A . n C 3 160 LYS 160 160 160 LYS LYS A . n C 3 161 PRO 161 161 161 PRO PRO A . n C 3 162 ASN 162 162 162 ASN ASN A . n C 3 163 GLY 163 163 163 GLY GLY A . n C 3 164 LEU 164 164 164 LEU LEU A . n C 3 165 GLY 165 165 165 GLY GLY A . n C 3 166 VAL 166 166 166 VAL VAL A . n C 3 167 ILE 167 167 167 ILE ILE A . n C 3 168 ARG 168 168 168 ARG ARG A . n C 3 169 PRO 169 169 169 PRO PRO A . n C 3 170 THR 170 170 170 THR THR A . n C 3 171 GLU 171 171 171 GLU GLU A . n C 3 172 VAL 172 172 172 VAL VAL A . n C 3 173 GLN 173 173 173 GLN GLN A . n C 3 174 ASP 174 174 174 ASP ASP A . n C 3 175 PHE 175 175 175 PHE PHE A . n C 3 176 LEU 176 176 176 LEU LEU A . n C 3 177 ASN 177 177 177 ASN ASN A . n C 3 178 GLU 178 178 178 GLU GLU A . n C 3 179 LEU 179 179 179 LEU LEU A . n C 3 180 ASP 180 180 180 ASP ASP A . n C 3 181 ILE 181 181 181 ILE ILE A . n C 3 182 ASP 182 182 182 ASP ASP A . n C 3 183 GLU 183 183 183 GLU GLU A . n C 3 184 ILE 184 184 184 ILE ILE A . n C 3 185 PRO 185 185 185 PRO PRO A . n C 3 186 GLY 186 186 186 GLY GLY A . n C 3 187 ILE 187 187 187 ILE ILE A . n C 3 188 GLY 188 188 188 GLY GLY A . n C 3 189 SER 189 189 189 SER SER A . n C 3 190 VAL 190 190 190 VAL VAL A . n C 3 191 LEU 191 191 191 LEU LEU A . n C 3 192 ALA 192 192 192 ALA ALA A . n C 3 193 ARG 193 193 193 ARG ARG A . n C 3 194 ARG 194 194 194 ARG ARG A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 ASN 196 196 196 ASN ASN A . n C 3 197 GLU 197 197 197 GLU GLU A . n C 3 198 LEU 198 198 198 LEU LEU A . n C 3 199 GLY 199 199 199 GLY GLY A . n C 3 200 ILE 200 200 200 ILE ILE A . n C 3 201 GLN 201 201 201 GLN GLN A . n C 3 202 LYS 202 202 202 LYS LYS A . n C 3 203 LEU 203 203 203 LEU LEU A . n C 3 204 ARG 204 204 204 ARG ARG A . n C 3 205 ASP 205 205 205 ASP ASP A . n C 3 206 ILE 206 206 206 ILE ILE A . n C 3 207 LEU 207 207 207 LEU LEU A . n C 3 208 SER 208 208 208 SER SER A . n C 3 209 LYS 209 209 209 LYS LYS A . n C 3 210 ASN 210 210 210 ASN ASN A . n C 3 211 TYR 211 211 211 TYR TYR A . n C 3 212 ASN 212 212 212 ASN ASN A . n C 3 213 GLU 213 213 213 GLU GLU A . n C 3 214 LEU 214 214 214 LEU LEU A . n C 3 215 GLU 215 215 215 GLU GLU A . n C 3 216 LYS 216 216 216 LYS LYS A . n C 3 217 ILE 217 217 217 ILE ILE A . n C 3 218 THR 218 218 218 THR THR A . n C 3 219 GLY 219 219 219 GLY GLY A . n C 3 220 LYS 220 220 220 LYS LYS A . n C 3 221 ALA 221 221 221 ALA ALA A . n C 3 222 LYS 222 222 222 LYS LYS A . n C 3 223 ALA 223 223 223 ALA ALA A . n C 3 224 LEU 224 224 224 LEU LEU A . n C 3 225 TYR 225 225 225 TYR TYR A . n C 3 226 LEU 226 226 226 LEU LEU A . n C 3 227 LEU 227 227 227 LEU LEU A . n C 3 228 LYS 228 228 228 LYS LYS A . n C 3 229 LEU 229 229 229 LEU LEU A . n C 3 230 ALA 230 230 230 ALA ALA A . n C 3 231 GLN 231 231 231 GLN GLN A . n C 3 232 ASN 232 232 232 ASN ASN A . n C 3 233 LYS 233 233 233 LYS LYS A . n C 3 234 TYR 234 234 234 TYR TYR A . n C 3 235 SER 235 235 235 SER SER A . n C 3 236 GLU 236 236 236 GLU GLU A . n C 3 237 PRO 237 237 237 PRO PRO A . n C 3 238 VAL 238 238 238 VAL VAL A . n C 3 239 GLU 239 239 239 GLU GLU A . n C 3 240 ASN 240 240 240 ASN ASN A . n C 3 241 LYS 241 241 241 LYS LYS A . n C 3 242 SER 242 242 242 SER SER A . n C 3 243 LYS 243 243 243 LYS LYS A . n C 3 244 ILE 244 244 244 ILE ILE A . n C 3 245 PRO 245 245 245 PRO PRO A . n C 3 246 HIS 246 246 246 HIS HIS A . n C 3 247 GLY 247 247 247 GLY GLY A . n C 3 248 ARG 248 248 248 ARG ARG A . n C 3 249 TYR 249 249 249 TYR TYR A . n C 3 250 LEU 250 250 250 LEU LEU A . n C 3 251 THR 251 251 251 THR THR A . n C 3 252 LEU 252 252 252 LEU LEU A . n C 3 253 PRO 253 253 253 PRO PRO A . n C 3 254 TYR 254 254 254 TYR TYR A . n C 3 255 ASN 255 255 255 ASN ASN A . n C 3 256 THR 256 256 256 THR THR A . n C 3 257 ARG 257 257 257 ARG ARG A . n C 3 258 ASP 258 258 258 ASP ASP A . n C 3 259 VAL 259 259 259 VAL VAL A . n C 3 260 LYS 260 260 260 LYS LYS A . n C 3 261 VAL 261 261 261 VAL VAL A . n C 3 262 ILE 262 262 262 ILE ILE A . n C 3 263 LEU 263 263 263 LEU LEU A . n C 3 264 PRO 264 264 264 PRO PRO A . n C 3 265 TYR 265 265 265 TYR TYR A . n C 3 266 LEU 266 266 266 LEU LEU A . n C 3 267 LYS 267 267 267 LYS LYS A . n C 3 268 LYS 268 268 268 LYS LYS A . n C 3 269 ALA 269 269 269 ALA ALA A . n C 3 270 ILE 270 270 270 ILE ILE A . n C 3 271 ASN 271 271 271 ASN ASN A . n C 3 272 GLU 272 272 272 GLU GLU A . n C 3 273 ALA 273 273 273 ALA ALA A . n C 3 274 TYR 274 274 274 TYR TYR A . n C 3 275 ASN 275 275 275 ASN ASN A . n C 3 276 LYS 276 276 276 LYS LYS A . n C 3 277 VAL 277 277 277 VAL VAL A . n C 3 278 ASN 278 278 278 ASN ASN A . n C 3 279 GLY 279 279 279 GLY GLY A . n C 3 280 ILE 280 280 280 ILE ILE A . n C 3 281 PRO 281 281 281 PRO PRO A . n C 3 282 MET 282 282 282 MET MET A . n C 3 283 ARG 283 283 283 ARG ARG A . n C 3 284 ILE 284 284 284 ILE ILE A . n C 3 285 THR 285 285 285 THR THR A . n C 3 286 VAL 286 286 286 VAL VAL A . n C 3 287 ILE 287 287 287 ILE ILE A . n C 3 288 ALA 288 288 288 ALA ALA A . n C 3 289 ILE 289 289 289 ILE ILE A . n C 3 290 MET 290 290 290 MET MET A . n C 3 291 GLU 291 291 291 GLU GLU A . n C 3 292 ASP 292 292 292 ASP ASP A . n C 3 293 LEU 293 293 293 LEU LEU A . n C 3 294 ASP 294 294 294 ASP ASP A . n C 3 295 ILE 295 295 295 ILE ILE A . n C 3 296 LEU 296 296 296 LEU LEU A . n C 3 297 SER 297 297 297 SER SER A . n C 3 298 LYS 298 298 298 LYS LYS A . n C 3 299 GLY 299 299 299 GLY GLY A . n C 3 300 LYS 300 300 300 LYS LYS A . n C 3 301 LYS 301 301 301 LYS LYS A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 LYS 303 303 303 LYS LYS A . n C 3 304 HIS 304 304 304 HIS HIS A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 ILE 306 306 306 ILE ILE A . n C 3 307 SER 307 307 307 SER SER A . n C 3 308 ILE 308 308 308 ILE ILE A . n C 3 309 ASP 309 309 309 ASP ASP A . n C 3 310 ASN 310 310 310 ASN ASN A . n C 3 311 ALA 311 311 311 ALA ALA A . n C 3 312 TYR 312 312 312 TYR TYR A . n C 3 313 LYS 313 313 313 LYS LYS A . n C 3 314 VAL 314 314 314 VAL VAL A . n C 3 315 ALA 315 315 315 ALA ALA A . n C 3 316 GLU 316 316 316 GLU GLU A . n C 3 317 ASP 317 317 317 ASP ASP A . n C 3 318 LEU 318 318 318 LEU LEU A . n C 3 319 LEU 319 319 319 LEU LEU A . n C 3 320 ARG 320 320 320 ARG ARG A . n C 3 321 GLU 321 321 321 GLU GLU A . n C 3 322 LEU 322 322 322 LEU LEU A . n C 3 323 LEU 323 323 323 LEU LEU A . n C 3 324 VAL 324 324 324 VAL VAL A . n C 3 325 ARG 325 325 325 ARG ARG A . n C 3 326 ASP 326 326 326 ASP ASP A . n C 3 327 LYS 327 327 327 LYS LYS A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 ARG 329 329 329 ARG ARG A . n C 3 330 ASN 330 330 330 ASN ASN A . n C 3 331 VAL 331 331 331 VAL VAL A . n C 3 332 ARG 332 332 332 ARG ARG A . n C 3 333 ARG 333 333 333 ARG ARG A . n C 3 334 ILE 334 334 334 ILE ILE A . n C 3 335 GLY 335 335 335 GLY GLY A . n C 3 336 VAL 336 336 336 VAL VAL A . n C 3 337 LYS 337 337 337 LYS LYS A . n C 3 338 LEU 338 338 338 LEU LEU A . n C 3 339 ASP 339 339 339 ASP ASP A . n C 3 340 ASN 340 340 340 ASN ASN A . n C 3 341 ILE 341 341 341 ILE ILE A . n C 3 342 ILE 342 342 342 ILE ILE A . n C 3 343 ILE 343 343 343 ILE ILE A . n C 3 344 ASN 344 344 344 ASN ASN A . n C 3 345 LYS 345 345 ? ? ? A . n C 3 346 THR 346 346 ? ? ? A . n C 3 347 ASN 347 347 ? ? ? A . n C 3 348 LEU 348 348 ? ? ? A . n C 3 349 SER 349 349 ? ? ? A . n C 3 350 ASP 350 350 ? ? ? A . n C 3 351 PHE 351 351 ? ? ? A . n C 3 352 PHE 352 352 ? ? ? A . n C 3 353 ASP 353 353 ? ? ? A . n C 3 354 ILE 354 354 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 355 1 CA CA A . E 5 HOH 1 18 18 HOH HOH P . E 5 HOH 2 33 33 HOH HOH P . F 5 HOH 1 17 17 HOH HOH T . F 5 HOH 2 29 29 HOH HOH T . F 5 HOH 3 35 35 HOH HOH T . G 5 HOH 1 356 2 HOH HOH A . G 5 HOH 2 357 3 HOH HOH A . G 5 HOH 3 358 4 HOH HOH A . G 5 HOH 4 359 6 HOH HOH A . G 5 HOH 5 360 7 HOH HOH A . G 5 HOH 6 361 8 HOH HOH A . G 5 HOH 7 362 9 HOH HOH A . G 5 HOH 8 363 10 HOH HOH A . G 5 HOH 9 364 11 HOH HOH A . G 5 HOH 10 365 12 HOH HOH A . G 5 HOH 11 366 13 HOH HOH A . G 5 HOH 12 367 14 HOH HOH A . G 5 HOH 13 368 15 HOH HOH A . G 5 HOH 14 369 16 HOH HOH A . G 5 HOH 15 370 19 HOH HOH A . G 5 HOH 16 371 20 HOH HOH A . G 5 HOH 17 372 21 HOH HOH A . G 5 HOH 18 373 22 HOH HOH A . G 5 HOH 19 374 23 HOH HOH A . G 5 HOH 20 375 24 HOH HOH A . G 5 HOH 21 376 25 HOH HOH A . G 5 HOH 22 377 26 HOH HOH A . G 5 HOH 23 378 27 HOH HOH A . G 5 HOH 24 379 28 HOH HOH A . G 5 HOH 25 380 30 HOH HOH A . G 5 HOH 26 381 31 HOH HOH A . G 5 HOH 27 382 32 HOH HOH A . G 5 HOH 28 383 34 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2930 ? 1 MORE -32.5 ? 1 'SSA (A^2)' 20450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 355 ? 1_555 O ? G HOH . ? A HOH 356 ? 1_555 120.2 ? 2 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 355 ? 1_555 O ? G HOH . ? A HOH 357 ? 1_555 67.4 ? 3 O ? G HOH . ? A HOH 356 ? 1_555 CA ? D CA . ? A CA 355 ? 1_555 O ? G HOH . ? A HOH 357 ? 1_555 110.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 30.6328 17.3286 -42.4320 -0.2245 -0.1677 -0.1067 0.1351 0.0037 -0.0651 1.8002 1.4560 4.9782 -0.3832 1.3976 -0.2416 0.0060 -0.0124 -0.2935 0.2329 0.1338 0.1256 0.3672 -0.2820 -0.1397 'X-RAY DIFFRACTION' 2 ? refined 44.4239 -4.1753 -59.9517 0.1281 0.1400 0.2328 0.0048 0.0015 -0.0897 2.9074 7.3030 9.2970 2.4181 1.3945 7.3410 -0.1126 0.0845 -0.3693 -0.0095 0.4947 -0.7982 0.5984 0.2678 -0.3821 'X-RAY DIFFRACTION' 3 ? refined 27.2828 -4.2077 -48.5620 0.6382 0.0676 0.4815 0.1235 -0.2403 0.0352 0.5203 8.9903 0.0780 -2.1629 0.2015 -0.8375 -0.2218 0.4282 0.7622 -0.8961 -0.1172 0.6141 -0.3505 -0.4016 0.3390 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 C 1 A 240 C 240 ? 'X-RAY DIFFRACTION' ? 2 2 A 241 C 241 A 344 C 344 ? 'X-RAY DIFFRACTION' ? 3 3 P 1 A 1 P 11 A 11 ? 'X-RAY DIFFRACTION' ? 4 3 T 3 B 3 T 14 B 14 ? 'X-RAY DIFFRACTION' ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 P DC 9 ? ? N4 P DC 9 ? ? 1.268 1.335 -0.067 0.009 N 2 1 N1 P DC 9 ? ? C6 P DC 9 ? ? 1.409 1.367 0.042 0.006 N 3 1 N3 P DC 9 ? ? C4 P DC 9 ? ? 1.408 1.335 0.073 0.007 N 4 1 C4 P DC 9 ? ? C5 P DC 9 ? ? 1.479 1.425 0.054 0.008 N 5 1 C2 P DG 10 ? ? N3 P DG 10 ? ? 1.271 1.323 -0.052 0.008 N 6 1 C6 P DG 10 ? ? O6 P DG 10 ? ? 1.298 1.237 0.061 0.009 N 7 1 C4 T DC 3 ? ? N4 T DC 3 ? ? 1.433 1.335 0.098 0.009 N 8 1 N1 T DC 3 ? ? C2 T DC 3 ? ? 1.488 1.397 0.091 0.010 N 9 1 C2 T DC 3 ? ? N3 T DC 3 ? ? 1.418 1.353 0.065 0.008 N 10 1 C4 T DC 3 ? ? C5 T DC 3 ? ? 1.549 1.425 0.124 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" P DA 2 ? ? "C2'" P DA 2 ? ? "C1'" P DA 2 ? ? 95.44 102.40 -6.96 0.80 N 2 1 "O4'" P DA 2 ? ? "C1'" P DA 2 ? ? N9 P DA 2 ? ? 112.58 108.30 4.28 0.30 N 3 1 "O4'" P DG 7 ? ? "C1'" P DG 7 ? ? N9 P DG 7 ? ? 112.99 108.30 4.69 0.30 N 4 1 C6 P DC 9 ? ? N1 P DC 9 ? ? C2 P DC 9 ? ? 125.45 120.30 5.15 0.40 N 5 1 C2 P DC 9 ? ? N3 P DC 9 ? ? C4 P DC 9 ? ? 124.24 119.90 4.34 0.50 N 6 1 N3 P DC 9 ? ? C4 P DC 9 ? ? C5 P DC 9 ? ? 118.60 121.90 -3.30 0.40 N 7 1 N3 P DG 10 ? ? C4 P DG 10 ? ? C5 P DG 10 ? ? 131.80 128.60 3.20 0.50 N 8 1 "O4'" T DC 3 ? ? "C4'" T DC 3 ? ? "C3'" T DC 3 ? ? 102.09 104.50 -2.41 0.40 N 9 1 "O4'" T DC 3 ? ? "C1'" T DC 3 ? ? N1 T DC 3 ? ? 112.35 108.30 4.05 0.30 N 10 1 C4 T DC 3 ? ? C5 T DC 3 ? ? C6 T DC 3 ? ? 121.39 117.40 3.99 0.50 N 11 1 "C3'" T DG 9 ? ? "C2'" T DG 9 ? ? "C1'" T DG 9 ? ? 97.03 102.40 -5.37 0.80 N 12 1 "O4'" T DG 9 ? ? "C1'" T DG 9 ? ? N9 T DG 9 ? ? 110.74 108.30 2.44 0.30 N 13 1 "C3'" T DG 10 ? ? "O3'" T DG 10 ? ? P T DC 11 ? ? 128.00 119.70 8.30 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 35.97 61.27 2 1 SER A 34 ? ? -80.04 -158.31 3 1 ALA A 44 ? ? -67.77 -75.35 4 1 ASP A 205 ? ? -38.15 -39.32 5 1 LYS A 216 ? ? -59.56 -7.38 6 1 THR A 218 ? ? -123.14 -51.19 7 1 ASN A 232 ? ? 72.60 33.43 8 1 SER A 235 ? ? -112.02 -75.46 9 1 GLU A 236 ? ? 52.92 95.33 10 1 ARG A 257 ? ? -141.52 -4.07 11 1 PRO A 264 ? ? -55.22 -4.38 12 1 ALA A 273 ? ? -132.24 -57.30 13 1 LYS A 276 ? ? -83.59 37.58 14 1 LEU A 293 ? ? 65.75 -11.92 15 1 HIS A 304 ? ? -86.79 -149.79 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id T _pdbx_unobs_or_zero_occ_atoms.auth_comp_id DC _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 14 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "O3'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id DC _pdbx_unobs_or_zero_occ_atoms.label_seq_id 14 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "O3'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 T DT 1 ? B DT 1 2 1 Y 1 T DT 2 ? B DT 2 3 1 Y 1 T DC 15 ? B DC 15 4 1 Y 1 A ARG 36 ? C ARG 36 5 1 Y 1 A THR 37 ? C THR 37 6 1 Y 1 A LYS 38 ? C LYS 38 7 1 Y 1 A LYS 345 ? C LYS 345 8 1 Y 1 A THR 346 ? C THR 346 9 1 Y 1 A ASN 347 ? C ASN 347 10 1 Y 1 A LEU 348 ? C LEU 348 11 1 Y 1 A SER 349 ? C SER 349 12 1 Y 1 A ASP 350 ? C ASP 350 13 1 Y 1 A PHE 351 ? C PHE 351 14 1 Y 1 A PHE 352 ? C PHE 352 15 1 Y 1 A ASP 353 ? C ASP 353 16 1 Y 1 A ILE 354 ? C ILE 354 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DG OP3 O N N 159 DG P P N N 160 DG OP1 O N N 161 DG OP2 O N N 162 DG "O5'" O N N 163 DG "C5'" C N N 164 DG "C4'" C N R 165 DG "O4'" O N N 166 DG "C3'" C N S 167 DG "O3'" O N N 168 DG "C2'" C N N 169 DG "C1'" C N R 170 DG N9 N Y N 171 DG C8 C Y N 172 DG N7 N Y N 173 DG C5 C Y N 174 DG C6 C N N 175 DG O6 O N N 176 DG N1 N N N 177 DG C2 C N N 178 DG N2 N N N 179 DG N3 N N N 180 DG C4 C Y N 181 DG HOP3 H N N 182 DG HOP2 H N N 183 DG "H5'" H N N 184 DG "H5''" H N N 185 DG "H4'" H N N 186 DG "H3'" H N N 187 DG "HO3'" H N N 188 DG "H2'" H N N 189 DG "H2''" H N N 190 DG "H1'" H N N 191 DG H8 H N N 192 DG H1 H N N 193 DG H21 H N N 194 DG H22 H N N 195 DT OP3 O N N 196 DT P P N N 197 DT OP1 O N N 198 DT OP2 O N N 199 DT "O5'" O N N 200 DT "C5'" C N N 201 DT "C4'" C N R 202 DT "O4'" O N N 203 DT "C3'" C N S 204 DT "O3'" O N N 205 DT "C2'" C N N 206 DT "C1'" C N R 207 DT N1 N N N 208 DT C2 C N N 209 DT O2 O N N 210 DT N3 N N N 211 DT C4 C N N 212 DT O4 O N N 213 DT C5 C N N 214 DT C7 C N N 215 DT C6 C N N 216 DT HOP3 H N N 217 DT HOP2 H N N 218 DT "H5'" H N N 219 DT "H5''" H N N 220 DT "H4'" H N N 221 DT "H3'" H N N 222 DT "HO3'" H N N 223 DT "H2'" H N N 224 DT "H2''" H N N 225 DT "H1'" H N N 226 DT H3 H N N 227 DT H71 H N N 228 DT H72 H N N 229 DT H73 H N N 230 DT H6 H N N 231 GLN N N N N 232 GLN CA C N S 233 GLN C C N N 234 GLN O O N N 235 GLN CB C N N 236 GLN CG C N N 237 GLN CD C N N 238 GLN OE1 O N N 239 GLN NE2 N N N 240 GLN OXT O N N 241 GLN H H N N 242 GLN H2 H N N 243 GLN HA H N N 244 GLN HB2 H N N 245 GLN HB3 H N N 246 GLN HG2 H N N 247 GLN HG3 H N N 248 GLN HE21 H N N 249 GLN HE22 H N N 250 GLN HXT H N N 251 GLU N N N N 252 GLU CA C N S 253 GLU C C N N 254 GLU O O N N 255 GLU CB C N N 256 GLU CG C N N 257 GLU CD C N N 258 GLU OE1 O N N 259 GLU OE2 O N N 260 GLU OXT O N N 261 GLU H H N N 262 GLU H2 H N N 263 GLU HA H N N 264 GLU HB2 H N N 265 GLU HB3 H N N 266 GLU HG2 H N N 267 GLU HG3 H N N 268 GLU HE2 H N N 269 GLU HXT H N N 270 GLY N N N N 271 GLY CA C N N 272 GLY C C N N 273 GLY O O N N 274 GLY OXT O N N 275 GLY H H N N 276 GLY H2 H N N 277 GLY HA2 H N N 278 GLY HA3 H N N 279 GLY HXT H N N 280 HIS N N N N 281 HIS CA C N S 282 HIS C C N N 283 HIS O O N N 284 HIS CB C N N 285 HIS CG C Y N 286 HIS ND1 N Y N 287 HIS CD2 C Y N 288 HIS CE1 C Y N 289 HIS NE2 N Y N 290 HIS OXT O N N 291 HIS H H N N 292 HIS H2 H N N 293 HIS HA H N N 294 HIS HB2 H N N 295 HIS HB3 H N N 296 HIS HD1 H N N 297 HIS HD2 H N N 298 HIS HE1 H N N 299 HIS HE2 H N N 300 HIS HXT H N N 301 HOH O O N N 302 HOH H1 H N N 303 HOH H2 H N N 304 ILE N N N N 305 ILE CA C N S 306 ILE C C N N 307 ILE O O N N 308 ILE CB C N S 309 ILE CG1 C N N 310 ILE CG2 C N N 311 ILE CD1 C N N 312 ILE OXT O N N 313 ILE H H N N 314 ILE H2 H N N 315 ILE HA H N N 316 ILE HB H N N 317 ILE HG12 H N N 318 ILE HG13 H N N 319 ILE HG21 H N N 320 ILE HG22 H N N 321 ILE HG23 H N N 322 ILE HD11 H N N 323 ILE HD12 H N N 324 ILE HD13 H N N 325 ILE HXT H N N 326 LEU N N N N 327 LEU CA C N S 328 LEU C C N N 329 LEU O O N N 330 LEU CB C N N 331 LEU CG C N N 332 LEU CD1 C N N 333 LEU CD2 C N N 334 LEU OXT O N N 335 LEU H H N N 336 LEU H2 H N N 337 LEU HA H N N 338 LEU HB2 H N N 339 LEU HB3 H N N 340 LEU HG H N N 341 LEU HD11 H N N 342 LEU HD12 H N N 343 LEU HD13 H N N 344 LEU HD21 H N N 345 LEU HD22 H N N 346 LEU HD23 H N N 347 LEU HXT H N N 348 LYS N N N N 349 LYS CA C N S 350 LYS C C N N 351 LYS O O N N 352 LYS CB C N N 353 LYS CG C N N 354 LYS CD C N N 355 LYS CE C N N 356 LYS NZ N N N 357 LYS OXT O N N 358 LYS H H N N 359 LYS H2 H N N 360 LYS HA H N N 361 LYS HB2 H N N 362 LYS HB3 H N N 363 LYS HG2 H N N 364 LYS HG3 H N N 365 LYS HD2 H N N 366 LYS HD3 H N N 367 LYS HE2 H N N 368 LYS HE3 H N N 369 LYS HZ1 H N N 370 LYS HZ2 H N N 371 LYS HZ3 H N N 372 LYS HXT H N N 373 MET N N N N 374 MET CA C N S 375 MET C C N N 376 MET O O N N 377 MET CB C N N 378 MET CG C N N 379 MET SD S N N 380 MET CE C N N 381 MET OXT O N N 382 MET H H N N 383 MET H2 H N N 384 MET HA H N N 385 MET HB2 H N N 386 MET HB3 H N N 387 MET HG2 H N N 388 MET HG3 H N N 389 MET HE1 H N N 390 MET HE2 H N N 391 MET HE3 H N N 392 MET HXT H N N 393 PHE N N N N 394 PHE CA C N S 395 PHE C C N N 396 PHE O O N N 397 PHE CB C N N 398 PHE CG C Y N 399 PHE CD1 C Y N 400 PHE CD2 C Y N 401 PHE CE1 C Y N 402 PHE CE2 C Y N 403 PHE CZ C Y N 404 PHE OXT O N N 405 PHE H H N N 406 PHE H2 H N N 407 PHE HA H N N 408 PHE HB2 H N N 409 PHE HB3 H N N 410 PHE HD1 H N N 411 PHE HD2 H N N 412 PHE HE1 H N N 413 PHE HE2 H N N 414 PHE HZ H N N 415 PHE HXT H N N 416 PRO N N N N 417 PRO CA C N S 418 PRO C C N N 419 PRO O O N N 420 PRO CB C N N 421 PRO CG C N N 422 PRO CD C N N 423 PRO OXT O N N 424 PRO H H N N 425 PRO HA H N N 426 PRO HB2 H N N 427 PRO HB3 H N N 428 PRO HG2 H N N 429 PRO HG3 H N N 430 PRO HD2 H N N 431 PRO HD3 H N N 432 PRO HXT H N N 433 SER N N N N 434 SER CA C N S 435 SER C C N N 436 SER O O N N 437 SER CB C N N 438 SER OG O N N 439 SER OXT O N N 440 SER H H N N 441 SER H2 H N N 442 SER HA H N N 443 SER HB2 H N N 444 SER HB3 H N N 445 SER HG H N N 446 SER HXT H N N 447 THR N N N N 448 THR CA C N S 449 THR C C N N 450 THR O O N N 451 THR CB C N R 452 THR OG1 O N N 453 THR CG2 C N N 454 THR OXT O N N 455 THR H H N N 456 THR H2 H N N 457 THR HA H N N 458 THR HB H N N 459 THR HG1 H N N 460 THR HG21 H N N 461 THR HG22 H N N 462 THR HG23 H N N 463 THR HXT H N N 464 TYR N N N N 465 TYR CA C N S 466 TYR C C N N 467 TYR O O N N 468 TYR CB C N N 469 TYR CG C Y N 470 TYR CD1 C Y N 471 TYR CD2 C Y N 472 TYR CE1 C Y N 473 TYR CE2 C Y N 474 TYR CZ C Y N 475 TYR OH O N N 476 TYR OXT O N N 477 TYR H H N N 478 TYR H2 H N N 479 TYR HA H N N 480 TYR HB2 H N N 481 TYR HB3 H N N 482 TYR HD1 H N N 483 TYR HD2 H N N 484 TYR HE1 H N N 485 TYR HE2 H N N 486 TYR HH H N N 487 TYR HXT H N N 488 VAL N N N N 489 VAL CA C N S 490 VAL C C N N 491 VAL O O N N 492 VAL CB C N N 493 VAL CG1 C N N 494 VAL CG2 C N N 495 VAL OXT O N N 496 VAL H H N N 497 VAL H2 H N N 498 VAL HA H N N 499 VAL HB H N N 500 VAL HG11 H N N 501 VAL HG12 H N N 502 VAL HG13 H N N 503 VAL HG21 H N N 504 VAL HG22 H N N 505 VAL HG23 H N N 506 VAL HXT H N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BQ2 'double helix' 3BQ2 'b-form double helix' 3BQ2 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 14 1_555 0.094 -0.085 0.108 -0.108 -5.338 -0.558 1 P_DG1:DC14_T P 1 ? T 14 ? 19 1 1 A DA 2 1_555 B DT 13 1_555 -0.566 -0.273 0.718 12.468 -13.123 -0.509 2 P_DA2:DT13_T P 2 ? T 13 ? 20 1 1 A DA 3 1_555 B DT 12 1_555 0.857 -0.227 0.241 2.573 -11.675 -2.578 3 P_DA3:DT12_T P 3 ? T 12 ? 20 1 1 A DG 4 1_555 B DC 11 1_555 0.751 -0.046 -0.013 0.372 -8.922 4.335 4 P_DG4:DC11_T P 4 ? T 11 ? 19 1 1 A DC 5 1_555 B DG 10 1_555 -0.173 -0.056 0.242 1.943 -12.538 3.713 5 P_DC5:DG10_T P 5 ? T 10 ? 19 1 1 A DC 6 1_555 B DG 9 1_555 0.406 -0.423 0.568 -6.872 -12.505 -11.147 6 P_DC6:DG9_T P 6 ? T 9 ? 19 1 1 A DG 7 1_555 B DC 8 1_555 -0.678 0.090 0.098 -4.050 -7.447 7.248 7 P_DG7:DC8_T P 7 ? T 8 ? 19 1 1 A DG 8 1_555 B DC 7 1_555 0.930 0.547 -0.138 -6.823 -6.217 -1.041 8 P_DG8:DC7_T P 8 ? T 7 ? ? 1 1 A DG 10 1_555 B DC 4 1_555 -0.448 0.085 -0.290 -9.065 2.531 6.429 9 P_DG10:DC4_T P 10 ? T 4 ? 19 1 1 A DG 11 1_555 B DC 3 1_555 -3.231 1.903 0.897 9.531 -15.167 57.244 10 P_DG11:DC3_T P 11 ? T 3 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 14 1_555 A DA 2 1_555 B DT 13 1_555 0.675 0.149 3.008 -4.666 -0.453 28.909 0.383 -2.248 2.863 -0.899 9.270 29.278 1 PP_DG1DA2:DT13DC14_TT P 1 ? T 14 ? P 2 ? T 13 ? 1 A DA 2 1_555 B DT 13 1_555 A DA 3 1_555 B DT 12 1_555 -1.015 0.183 3.468 -2.376 1.999 46.626 0.052 1.069 3.518 2.522 2.998 46.723 2 PP_DA2DA3:DT12DT13_TT P 2 ? T 13 ? P 3 ? T 12 ? 1 A DA 3 1_555 B DT 12 1_555 A DG 4 1_555 B DC 11 1_555 0.210 -0.690 3.427 -0.697 -1.345 34.548 -0.942 -0.467 3.446 -2.264 1.173 34.580 3 PP_DA3DG4:DC11DT12_TT P 3 ? T 12 ? P 4 ? T 11 ? 1 A DG 4 1_555 B DC 11 1_555 A DC 5 1_555 B DG 10 1_555 -0.433 -0.035 3.095 -3.047 2.681 32.512 -0.501 0.268 3.109 4.765 5.416 32.757 4 PP_DG4DC5:DG10DC11_TT P 4 ? T 11 ? P 5 ? T 10 ? 1 A DC 5 1_555 B DG 10 1_555 A DC 6 1_555 B DG 9 1_555 -0.507 -0.102 3.545 -1.351 -1.130 37.068 0.004 0.601 3.562 -1.776 2.123 37.108 5 PP_DC5DC6:DG9DG10_TT P 5 ? T 10 ? P 6 ? T 9 ? 1 A DC 6 1_555 B DG 9 1_555 A DG 7 1_555 B DC 8 1_555 1.003 -0.116 3.245 1.968 8.648 24.486 -2.630 -1.688 3.094 19.588 -4.457 26.020 6 PP_DC6DG7:DC8DG9_TT P 6 ? T 9 ? P 7 ? T 8 ? 1 A DG 7 1_555 B DC 8 1_555 A DG 8 1_555 B DC 7 1_555 -0.454 -0.149 3.362 -0.807 8.712 41.792 -1.103 0.541 3.276 12.054 1.117 42.658 7 PP_DG7DG8:DC7DC8_TT P 7 ? T 8 ? P 8 ? T 7 ? 1 A DG 8 1_555 B DC 7 1_555 A DG 10 1_555 B DC 4 1_555 0.126 1.061 6.632 3.530 6.060 64.231 0.469 0.187 6.696 5.682 -3.310 64.572 8 PP_DG8DG10:DC4DC7_TT P 8 ? T 7 ? P 10 ? T 4 ? 1 A DG 10 1_555 B DC 4 1_555 A DG 11 1_555 B DC 3 1_555 1.635 1.096 2.987 -9.712 0.160 27.268 2.165 -5.065 2.288 0.327 19.820 28.916 9 PP_DG10DG11:DC3DC4_TT P 10 ? T 4 ? P 11 ? T 3 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1IM4 'PDB entries 1IM4 and 1K1Q' 2 ? 'experimental model' PDB 1K1Q 'PDB entries 1IM4 and 1K1Q' #