data_3BQ3 # _entry.id 3BQ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BQ3 RCSB RCSB045826 WWPDB D_1000045826 # _pdbx_database_status.entry_id 3BQ3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chou, Y.C.' 1 'Sicheri, F.' 2 # _citation.id primary _citation.title 'Dcn1 Functions as a Scaffold-Type E3 Ligase for Cullin Neddylation.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 29 _citation.page_first 23 _citation.page_last 35 _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18206966 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2007.12.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kurz, T.' 1 primary 'Chou, Y.C.' 2 primary 'Willems, A.R.' 3 primary 'Meyer-Schaller, N.' 4 primary 'Hecht, M.L.' 5 primary 'Tyers, M.' 6 primary 'Peter, M.' 7 primary 'Sicheri, F.' 8 # _cell.entry_id 3BQ3 _cell.length_a 106.863 _cell.length_b 51.453 _cell.length_c 70.852 _cell.angle_alpha 90.00 _cell.angle_beta 129.82 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BQ3 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Defective in cullin neddylation protein 1' 32497.084 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AMSNNKIKRKDASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVF EHYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLSTWF(MSE)QGCSTISD(MSE)QECIKT LDVKLHEDLQYFTQIYNYAFNLILDPNRKDIDTDEGIQYWKLFFQPEYPVR(MSE)EPDLLEAWFRFLRDEGKTTISKDT WR(MSE)LLLFFKRYPTIQKIISDYDETAAWPFIIDEFYECLQDQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;AMSNNKIKRKDASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVF EHYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLSTWFMQGCSTISDMQECIKTLDVKLHED LQYFTQIYNYAFNLILDPNRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKRYP TIQKIISDYDETAAWPFIIDEFYECLQDQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 SER n 1 4 ASN n 1 5 ASN n 1 6 LYS n 1 7 ILE n 1 8 LYS n 1 9 ARG n 1 10 LYS n 1 11 ASP n 1 12 ALA n 1 13 SER n 1 14 PRO n 1 15 GLU n 1 16 GLN n 1 17 GLU n 1 18 ALA n 1 19 ILE n 1 20 GLU n 1 21 SER n 1 22 PHE n 1 23 THR n 1 24 SER n 1 25 LEU n 1 26 THR n 1 27 LYS n 1 28 CYS n 1 29 ASP n 1 30 PRO n 1 31 LYS n 1 32 VAL n 1 33 SER n 1 34 ARG n 1 35 LYS n 1 36 TYR n 1 37 LEU n 1 38 GLN n 1 39 ARG n 1 40 ASN n 1 41 HIS n 1 42 TRP n 1 43 ASN n 1 44 ILE n 1 45 ASN n 1 46 TYR n 1 47 ALA n 1 48 LEU n 1 49 ASN n 1 50 ASP n 1 51 TYR n 1 52 TYR n 1 53 ASP n 1 54 LYS n 1 55 GLU n 1 56 ILE n 1 57 GLY n 1 58 THR n 1 59 PHE n 1 60 THR n 1 61 ASP n 1 62 GLU n 1 63 VAL n 1 64 SER n 1 65 THR n 1 66 VAL n 1 67 ALA n 1 68 HIS n 1 69 PRO n 1 70 PRO n 1 71 VAL n 1 72 TYR n 1 73 PRO n 1 74 LYS n 1 75 GLU n 1 76 LEU n 1 77 THR n 1 78 GLN n 1 79 VAL n 1 80 PHE n 1 81 GLU n 1 82 HIS n 1 83 TYR n 1 84 ILE n 1 85 ASN n 1 86 ASN n 1 87 ASN n 1 88 LEU n 1 89 PHE n 1 90 ASP n 1 91 ILE n 1 92 ASP n 1 93 SER n 1 94 LEU n 1 95 VAL n 1 96 LYS n 1 97 PHE n 1 98 ILE n 1 99 GLU n 1 100 GLU n 1 101 LEU n 1 102 GLY n 1 103 TYR n 1 104 ASN n 1 105 LEU n 1 106 GLU n 1 107 ASP n 1 108 LEU n 1 109 ALA n 1 110 THR n 1 111 LEU n 1 112 CYS n 1 113 LEU n 1 114 ALA n 1 115 HIS n 1 116 LEU n 1 117 LEU n 1 118 GLY n 1 119 TYR n 1 120 LYS n 1 121 LYS n 1 122 LEU n 1 123 GLU n 1 124 GLU n 1 125 PRO n 1 126 LEU n 1 127 LYS n 1 128 ARG n 1 129 GLU n 1 130 ASP n 1 131 PHE n 1 132 LEU n 1 133 SER n 1 134 THR n 1 135 TRP n 1 136 PHE n 1 137 MSE n 1 138 GLN n 1 139 GLY n 1 140 CYS n 1 141 SER n 1 142 THR n 1 143 ILE n 1 144 SER n 1 145 ASP n 1 146 MSE n 1 147 GLN n 1 148 GLU n 1 149 CYS n 1 150 ILE n 1 151 LYS n 1 152 THR n 1 153 LEU n 1 154 ASP n 1 155 VAL n 1 156 LYS n 1 157 LEU n 1 158 HIS n 1 159 GLU n 1 160 ASP n 1 161 LEU n 1 162 GLN n 1 163 TYR n 1 164 PHE n 1 165 THR n 1 166 GLN n 1 167 ILE n 1 168 TYR n 1 169 ASN n 1 170 TYR n 1 171 ALA n 1 172 PHE n 1 173 ASN n 1 174 LEU n 1 175 ILE n 1 176 LEU n 1 177 ASP n 1 178 PRO n 1 179 ASN n 1 180 ARG n 1 181 LYS n 1 182 ASP n 1 183 ILE n 1 184 ASP n 1 185 THR n 1 186 ASP n 1 187 GLU n 1 188 GLY n 1 189 ILE n 1 190 GLN n 1 191 TYR n 1 192 TRP n 1 193 LYS n 1 194 LEU n 1 195 PHE n 1 196 PHE n 1 197 GLN n 1 198 PRO n 1 199 GLU n 1 200 TYR n 1 201 PRO n 1 202 VAL n 1 203 ARG n 1 204 MSE n 1 205 GLU n 1 206 PRO n 1 207 ASP n 1 208 LEU n 1 209 LEU n 1 210 GLU n 1 211 ALA n 1 212 TRP n 1 213 PHE n 1 214 ARG n 1 215 PHE n 1 216 LEU n 1 217 ARG n 1 218 ASP n 1 219 GLU n 1 220 GLY n 1 221 LYS n 1 222 THR n 1 223 THR n 1 224 ILE n 1 225 SER n 1 226 LYS n 1 227 ASP n 1 228 THR n 1 229 TRP n 1 230 ARG n 1 231 MSE n 1 232 LEU n 1 233 LEU n 1 234 LEU n 1 235 PHE n 1 236 PHE n 1 237 LYS n 1 238 ARG n 1 239 TYR n 1 240 PRO n 1 241 THR n 1 242 ILE n 1 243 GLN n 1 244 LYS n 1 245 ILE n 1 246 ILE n 1 247 SER n 1 248 ASP n 1 249 TYR n 1 250 ASP n 1 251 GLU n 1 252 THR n 1 253 ALA n 1 254 ALA n 1 255 TRP n 1 256 PRO n 1 257 PHE n 1 258 ILE n 1 259 ILE n 1 260 ASP n 1 261 GLU n 1 262 PHE n 1 263 TYR n 1 264 GLU n 1 265 CYS n 1 266 LEU n 1 267 GLN n 1 268 ASP n 1 269 GLN n 1 270 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene DCN1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCN1_YEAST _struct_ref.pdbx_db_accession Q12395 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNNKIKRKDASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVFE HYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLSTWFMQGCSTISDMQECIKTLDVKLHEDL QYFTQIYNYAFNLILDPNRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKRYPT IQKIISDYDETAAWPFIIDEFYECLQDQQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BQ3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 270 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q12395 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 269 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 269 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3BQ3 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q12395 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'CLONING ARTIFACT' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BQ3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '400mM Ammonium Acetate, 30% PEG 4000 (w/v), 0.1M Tri-Sodium Citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-11-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97914 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 8-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 8-BM _diffrn_source.pdbx_wavelength 0.97914 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3BQ3 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 21992 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.05200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.2800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 83.7 _reflns_shell.Rmerge_I_obs 0.47900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.412 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BQ3 _refine.ls_number_reflns_obs 20888 _refine.ls_number_reflns_all 23327 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.48 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 94.3 _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1103 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 34.15 _refine.aniso_B[1][1] -0.06000 _refine.aniso_B[2][2] -0.06000 _refine.aniso_B[3][3] -0.01000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -0.10000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.169 _refine.pdbx_overall_ESU_R_Free 0.157 _refine.overall_SU_ML 0.116 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.975 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2124 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 2242 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 29.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 2195 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.715 1.958 ? 2978 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.709 5.000 ? 250 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.024 24.874 ? 119 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.074 15.000 ? 383 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.399 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.138 0.200 ? 313 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1695 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.223 0.200 ? 995 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.313 0.200 ? 1536 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.211 0.200 ? 91 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.183 0.200 ? 70 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.166 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.376 1.500 ? 1320 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.359 2.000 ? 2055 'X-RAY DIFFRACTION' ? r_scbond_it 4.087 3.000 ? 1051 'X-RAY DIFFRACTION' ? r_scangle_it 5.666 4.500 ? 923 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 1152 _refine_ls_shell.R_factor_R_work 0.3310 _refine_ls_shell.percent_reflns_obs 72.20 _refine_ls_shell.R_factor_R_free 0.4810 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BQ3 _struct.title 'Crystal structure of S. cerevisiae Dcn1' _struct.pdbx_descriptor 'Defective in cullin neddylation protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BQ3 _struct_keywords.pdbx_keywords 'CELL CYCLE, Ligase' _struct_keywords.text 'ubiquitin, Nedd8, neddylation, ubiquitination, SCF, cullin, E3 ligases, E2, cell cycle, protein degradation, Ligase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? LYS A 27 ? SER A 12 LYS A 26 1 ? 15 HELX_P HELX_P2 2 ASP A 29 ? ARG A 39 ? ASP A 28 ARG A 38 1 ? 11 HELX_P HELX_P3 3 ASN A 43 ? ILE A 56 ? ASN A 42 ILE A 55 1 ? 14 HELX_P HELX_P4 4 PRO A 73 ? ILE A 84 ? PRO A 72 ILE A 83 1 ? 12 HELX_P HELX_P5 5 ASP A 90 ? GLY A 102 ? ASP A 89 GLY A 101 1 ? 13 HELX_P HELX_P6 6 ASP A 107 ? LEU A 117 ? ASP A 106 LEU A 116 1 ? 11 HELX_P HELX_P7 7 LYS A 127 ? GLN A 138 ? LYS A 126 GLN A 137 1 ? 12 HELX_P HELX_P8 8 THR A 142 ? ASP A 160 ? THR A 141 ASP A 159 1 ? 19 HELX_P HELX_P9 9 ASP A 160 ? LEU A 176 ? ASP A 159 LEU A 175 1 ? 17 HELX_P HELX_P10 10 THR A 185 ? PHE A 196 ? THR A 184 PHE A 195 1 ? 12 HELX_P HELX_P11 11 GLU A 205 ? GLY A 220 ? GLU A 204 GLY A 219 1 ? 16 HELX_P HELX_P12 12 LYS A 226 ? TYR A 239 ? LYS A 225 TYR A 238 1 ? 14 HELX_P HELX_P13 13 THR A 241 ? TYR A 249 ? THR A 240 TYR A 248 1 ? 9 HELX_P HELX_P14 14 PRO A 256 ? GLN A 269 ? PRO A 255 GLN A 268 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 136 C ? ? ? 1_555 A MSE 137 N ? ? A PHE 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 137 C ? ? ? 1_555 A GLN 138 N ? ? A MSE 136 A GLN 137 1_555 ? ? ? ? ? ? ? 1.320 ? covale3 covale ? ? A ASP 145 C ? ? ? 1_555 A MSE 146 N ? ? A ASP 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 146 C ? ? ? 1_555 A GLN 147 N ? ? A MSE 145 A GLN 146 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A ARG 203 C ? ? ? 1_555 A MSE 204 N ? ? A ARG 202 A MSE 203 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 204 C ? ? ? 1_555 A GLU 205 N ? ? A MSE 203 A GLU 204 1_555 ? ? ? ? ? ? ? 1.310 ? covale7 covale ? ? A ARG 230 C ? ? ? 1_555 A MSE 231 N ? ? A ARG 229 A MSE 230 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 231 C ? ? ? 1_555 A LEU 232 N ? ? A MSE 230 A LEU 231 1_555 ? ? ? ? ? ? ? 1.319 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 182 ? ASP A 184 ? ASP A 181 ASP A 183 A 2 THR A 223 ? SER A 225 ? THR A 222 SER A 224 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 183 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 182 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 224 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 223 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 190 ? GLN A 189 . ? 1_555 ? 2 AC1 4 HOH C . ? HOH A 335 . ? 1_555 ? 3 AC1 4 HOH C . ? HOH A 343 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 361 . ? 1_555 ? # _atom_sites.entry_id 3BQ3 _atom_sites.fract_transf_matrix[1][1] 0.009358 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007802 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019435 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018376 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 ASN 4 3 ? ? ? A . n A 1 5 ASN 5 4 ? ? ? A . n A 1 6 LYS 6 5 ? ? ? A . n A 1 7 ILE 7 6 ? ? ? A . n A 1 8 LYS 8 7 ? ? ? A . n A 1 9 ARG 9 8 ? ? ? A . n A 1 10 LYS 10 9 ? ? ? A . n A 1 11 ASP 11 10 ? ? ? A . n A 1 12 ALA 12 11 ? ? ? A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 THR 26 25 25 THR THR A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 CYS 28 27 27 CYS CYS A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 ASN 40 39 39 ASN ASN A . n A 1 41 HIS 41 40 40 HIS HIS A . n A 1 42 TRP 42 41 41 TRP TRP A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 TYR 46 45 45 TYR TYR A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 ASN 49 48 48 ASN ASN A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 TYR 51 50 50 TYR TYR A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 THR 58 57 ? ? ? A . n A 1 59 PHE 59 58 ? ? ? A . n A 1 60 THR 60 59 ? ? ? A . n A 1 61 ASP 61 60 ? ? ? A . n A 1 62 GLU 62 61 ? ? ? A . n A 1 63 VAL 63 62 ? ? ? A . n A 1 64 SER 64 63 ? ? ? A . n A 1 65 THR 65 64 ? ? ? A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 HIS 68 67 67 HIS HIS A . n A 1 69 PRO 69 68 68 PRO PRO A . n A 1 70 PRO 70 69 69 PRO PRO A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 GLU 81 80 80 GLU GLU A . n A 1 82 HIS 82 81 81 HIS HIS A . n A 1 83 TYR 83 82 82 TYR TYR A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 ASN 85 84 84 ASN ASN A . n A 1 86 ASN 86 85 85 ASN ASN A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 ASP 90 89 89 ASP ASP A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 SER 93 92 92 SER SER A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 PHE 97 96 96 PHE PHE A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 ASN 104 103 103 ASN ASN A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 CYS 112 111 111 CYS CYS A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 ALA 114 113 113 ALA ALA A . n A 1 115 HIS 115 114 114 HIS HIS A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 LYS 121 120 120 LYS LYS A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLU 123 122 122 GLU GLU A . n A 1 124 GLU 124 123 123 GLU GLU A . n A 1 125 PRO 125 124 124 PRO PRO A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 ARG 128 127 127 ARG ARG A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ASP 130 129 129 ASP ASP A . n A 1 131 PHE 131 130 130 PHE PHE A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 THR 134 133 133 THR THR A . n A 1 135 TRP 135 134 134 TRP TRP A . n A 1 136 PHE 136 135 135 PHE PHE A . n A 1 137 MSE 137 136 136 MSE MSE A . n A 1 138 GLN 138 137 137 GLN GLN A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 CYS 140 139 139 CYS CYS A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 THR 142 141 141 THR THR A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 SER 144 143 143 SER SER A . n A 1 145 ASP 145 144 144 ASP ASP A . n A 1 146 MSE 146 145 145 MSE MSE A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 CYS 149 148 148 CYS CYS A . n A 1 150 ILE 150 149 149 ILE ILE A . n A 1 151 LYS 151 150 150 LYS LYS A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 ASP 154 153 153 ASP ASP A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 LYS 156 155 155 LYS LYS A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 HIS 158 157 157 HIS HIS A . n A 1 159 GLU 159 158 158 GLU GLU A . n A 1 160 ASP 160 159 159 ASP ASP A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 GLN 162 161 161 GLN GLN A . n A 1 163 TYR 163 162 162 TYR TYR A . n A 1 164 PHE 164 163 163 PHE PHE A . n A 1 165 THR 165 164 164 THR THR A . n A 1 166 GLN 166 165 165 GLN GLN A . n A 1 167 ILE 167 166 166 ILE ILE A . n A 1 168 TYR 168 167 167 TYR TYR A . n A 1 169 ASN 169 168 168 ASN ASN A . n A 1 170 TYR 170 169 169 TYR TYR A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 PHE 172 171 171 PHE PHE A . n A 1 173 ASN 173 172 172 ASN ASN A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 ILE 175 174 174 ILE ILE A . n A 1 176 LEU 176 175 175 LEU LEU A . n A 1 177 ASP 177 176 176 ASP ASP A . n A 1 178 PRO 178 177 177 PRO PRO A . n A 1 179 ASN 179 178 178 ASN ASN A . n A 1 180 ARG 180 179 179 ARG ARG A . n A 1 181 LYS 181 180 180 LYS LYS A . n A 1 182 ASP 182 181 181 ASP ASP A . n A 1 183 ILE 183 182 182 ILE ILE A . n A 1 184 ASP 184 183 183 ASP ASP A . n A 1 185 THR 185 184 184 THR THR A . n A 1 186 ASP 186 185 185 ASP ASP A . n A 1 187 GLU 187 186 186 GLU GLU A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 ILE 189 188 188 ILE ILE A . n A 1 190 GLN 190 189 189 GLN GLN A . n A 1 191 TYR 191 190 190 TYR TYR A . n A 1 192 TRP 192 191 191 TRP TRP A . n A 1 193 LYS 193 192 192 LYS LYS A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 PHE 195 194 194 PHE PHE A . n A 1 196 PHE 196 195 195 PHE PHE A . n A 1 197 GLN 197 196 196 GLN GLN A . n A 1 198 PRO 198 197 197 PRO PRO A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 TYR 200 199 199 TYR TYR A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 VAL 202 201 201 VAL VAL A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 MSE 204 203 203 MSE MSE A . n A 1 205 GLU 205 204 204 GLU GLU A . n A 1 206 PRO 206 205 205 PRO PRO A . n A 1 207 ASP 207 206 206 ASP ASP A . n A 1 208 LEU 208 207 207 LEU LEU A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 GLU 210 209 209 GLU GLU A . n A 1 211 ALA 211 210 210 ALA ALA A . n A 1 212 TRP 212 211 211 TRP TRP A . n A 1 213 PHE 213 212 212 PHE PHE A . n A 1 214 ARG 214 213 213 ARG ARG A . n A 1 215 PHE 215 214 214 PHE PHE A . n A 1 216 LEU 216 215 215 LEU LEU A . n A 1 217 ARG 217 216 216 ARG ARG A . n A 1 218 ASP 218 217 217 ASP ASP A . n A 1 219 GLU 219 218 218 GLU GLU A . n A 1 220 GLY 220 219 219 GLY GLY A . n A 1 221 LYS 221 220 220 LYS LYS A . n A 1 222 THR 222 221 221 THR THR A . n A 1 223 THR 223 222 222 THR THR A . n A 1 224 ILE 224 223 223 ILE ILE A . n A 1 225 SER 225 224 224 SER SER A . n A 1 226 LYS 226 225 225 LYS LYS A . n A 1 227 ASP 227 226 226 ASP ASP A . n A 1 228 THR 228 227 227 THR THR A . n A 1 229 TRP 229 228 228 TRP TRP A . n A 1 230 ARG 230 229 229 ARG ARG A . n A 1 231 MSE 231 230 230 MSE MSE A . n A 1 232 LEU 232 231 231 LEU LEU A . n A 1 233 LEU 233 232 232 LEU LEU A . n A 1 234 LEU 234 233 233 LEU LEU A . n A 1 235 PHE 235 234 234 PHE PHE A . n A 1 236 PHE 236 235 235 PHE PHE A . n A 1 237 LYS 237 236 236 LYS LYS A . n A 1 238 ARG 238 237 237 ARG ARG A . n A 1 239 TYR 239 238 238 TYR TYR A . n A 1 240 PRO 240 239 239 PRO PRO A . n A 1 241 THR 241 240 240 THR THR A . n A 1 242 ILE 242 241 241 ILE ILE A . n A 1 243 GLN 243 242 242 GLN GLN A . n A 1 244 LYS 244 243 243 LYS LYS A . n A 1 245 ILE 245 244 244 ILE ILE A . n A 1 246 ILE 246 245 245 ILE ILE A . n A 1 247 SER 247 246 246 SER SER A . n A 1 248 ASP 248 247 247 ASP ASP A . n A 1 249 TYR 249 248 248 TYR TYR A . n A 1 250 ASP 250 249 249 ASP ASP A . n A 1 251 GLU 251 250 250 GLU GLU A . n A 1 252 THR 252 251 251 THR THR A . n A 1 253 ALA 253 252 252 ALA ALA A . n A 1 254 ALA 254 253 253 ALA ALA A . n A 1 255 TRP 255 254 254 TRP TRP A . n A 1 256 PRO 256 255 255 PRO PRO A . n A 1 257 PHE 257 256 256 PHE PHE A . n A 1 258 ILE 258 257 257 ILE ILE A . n A 1 259 ILE 259 258 258 ILE ILE A . n A 1 260 ASP 260 259 259 ASP ASP A . n A 1 261 GLU 261 260 260 GLU GLU A . n A 1 262 PHE 262 261 261 PHE PHE A . n A 1 263 TYR 263 262 262 TYR TYR A . n A 1 264 GLU 264 263 263 GLU GLU A . n A 1 265 CYS 265 264 264 CYS CYS A . n A 1 266 LEU 266 265 265 LEU LEU A . n A 1 267 GLN 267 266 266 GLN GLN A . n A 1 268 ASP 268 267 267 ASP ASP A . n A 1 269 GLN 269 268 268 GLN GLN A . n A 1 270 GLN 270 269 269 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1 1 GOL GOL A . C 3 HOH 1 270 270 HOH HOH A . C 3 HOH 2 271 271 HOH HOH A . C 3 HOH 3 272 272 HOH HOH A . C 3 HOH 4 273 273 HOH HOH A . C 3 HOH 5 274 274 HOH HOH A . C 3 HOH 6 275 275 HOH HOH A . C 3 HOH 7 276 276 HOH HOH A . C 3 HOH 8 277 277 HOH HOH A . C 3 HOH 9 278 278 HOH HOH A . C 3 HOH 10 279 279 HOH HOH A . C 3 HOH 11 280 280 HOH HOH A . C 3 HOH 12 281 281 HOH HOH A . C 3 HOH 13 282 282 HOH HOH A . C 3 HOH 14 283 283 HOH HOH A . C 3 HOH 15 284 284 HOH HOH A . C 3 HOH 16 285 285 HOH HOH A . C 3 HOH 17 286 286 HOH HOH A . C 3 HOH 18 287 287 HOH HOH A . C 3 HOH 19 288 288 HOH HOH A . C 3 HOH 20 289 289 HOH HOH A . C 3 HOH 21 290 290 HOH HOH A . C 3 HOH 22 291 291 HOH HOH A . C 3 HOH 23 292 292 HOH HOH A . C 3 HOH 24 293 293 HOH HOH A . C 3 HOH 25 294 294 HOH HOH A . C 3 HOH 26 295 295 HOH HOH A . C 3 HOH 27 296 296 HOH HOH A . C 3 HOH 28 297 297 HOH HOH A . C 3 HOH 29 298 298 HOH HOH A . C 3 HOH 30 299 299 HOH HOH A . C 3 HOH 31 300 300 HOH HOH A . C 3 HOH 32 301 301 HOH HOH A . C 3 HOH 33 302 302 HOH HOH A . C 3 HOH 34 303 303 HOH HOH A . C 3 HOH 35 304 304 HOH HOH A . C 3 HOH 36 305 305 HOH HOH A . C 3 HOH 37 306 306 HOH HOH A . C 3 HOH 38 307 307 HOH HOH A . C 3 HOH 39 308 308 HOH HOH A . C 3 HOH 40 309 309 HOH HOH A . C 3 HOH 41 310 310 HOH HOH A . C 3 HOH 42 311 311 HOH HOH A . C 3 HOH 43 312 312 HOH HOH A . C 3 HOH 44 313 313 HOH HOH A . C 3 HOH 45 314 314 HOH HOH A . C 3 HOH 46 315 315 HOH HOH A . C 3 HOH 47 316 316 HOH HOH A . C 3 HOH 48 317 317 HOH HOH A . C 3 HOH 49 318 318 HOH HOH A . C 3 HOH 50 319 319 HOH HOH A . C 3 HOH 51 320 320 HOH HOH A . C 3 HOH 52 321 321 HOH HOH A . C 3 HOH 53 322 322 HOH HOH A . C 3 HOH 54 323 323 HOH HOH A . C 3 HOH 55 324 324 HOH HOH A . C 3 HOH 56 325 325 HOH HOH A . C 3 HOH 57 326 326 HOH HOH A . C 3 HOH 58 327 327 HOH HOH A . C 3 HOH 59 328 328 HOH HOH A . C 3 HOH 60 329 329 HOH HOH A . C 3 HOH 61 330 330 HOH HOH A . C 3 HOH 62 331 331 HOH HOH A . C 3 HOH 63 332 332 HOH HOH A . C 3 HOH 64 333 333 HOH HOH A . C 3 HOH 65 334 334 HOH HOH A . C 3 HOH 66 335 335 HOH HOH A . C 3 HOH 67 336 336 HOH HOH A . C 3 HOH 68 337 337 HOH HOH A . C 3 HOH 69 338 338 HOH HOH A . C 3 HOH 70 339 339 HOH HOH A . C 3 HOH 71 340 340 HOH HOH A . C 3 HOH 72 341 341 HOH HOH A . C 3 HOH 73 342 342 HOH HOH A . C 3 HOH 74 343 343 HOH HOH A . C 3 HOH 75 344 344 HOH HOH A . C 3 HOH 76 345 345 HOH HOH A . C 3 HOH 77 346 346 HOH HOH A . C 3 HOH 78 347 347 HOH HOH A . C 3 HOH 79 348 348 HOH HOH A . C 3 HOH 80 349 349 HOH HOH A . C 3 HOH 81 350 350 HOH HOH A . C 3 HOH 82 351 351 HOH HOH A . C 3 HOH 83 352 352 HOH HOH A . C 3 HOH 84 353 353 HOH HOH A . C 3 HOH 85 355 355 HOH HOH A . C 3 HOH 86 356 356 HOH HOH A . C 3 HOH 87 357 357 HOH HOH A . C 3 HOH 88 358 358 HOH HOH A . C 3 HOH 89 359 359 HOH HOH A . C 3 HOH 90 360 360 HOH HOH A . C 3 HOH 91 361 361 HOH HOH A . C 3 HOH 92 362 362 HOH HOH A . C 3 HOH 93 363 363 HOH HOH A . C 3 HOH 94 364 364 HOH HOH A . C 3 HOH 95 366 366 HOH HOH A . C 3 HOH 96 367 367 HOH HOH A . C 3 HOH 97 368 368 HOH HOH A . C 3 HOH 98 370 370 HOH HOH A . C 3 HOH 99 371 371 HOH HOH A . C 3 HOH 100 372 372 HOH HOH A . C 3 HOH 101 373 373 HOH HOH A . C 3 HOH 102 374 374 HOH HOH A . C 3 HOH 103 375 375 HOH HOH A . C 3 HOH 104 376 376 HOH HOH A . C 3 HOH 105 377 377 HOH HOH A . C 3 HOH 106 378 378 HOH HOH A . C 3 HOH 107 379 379 HOH HOH A . C 3 HOH 108 380 380 HOH HOH A . C 3 HOH 109 381 381 HOH HOH A . C 3 HOH 110 382 382 HOH HOH A . C 3 HOH 111 383 383 HOH HOH A . C 3 HOH 112 384 384 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 137 A MSE 136 ? MET SELENOMETHIONINE 2 A MSE 146 A MSE 145 ? MET SELENOMETHIONINE 3 A MSE 204 A MSE 203 ? MET SELENOMETHIONINE 4 A MSE 231 A MSE 230 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4200 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 106.8630000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 66 ? ? -77.42 -168.74 2 1 ASN A 86 ? ? 81.42 -0.57 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 0 ? A ALA 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A ASN 3 ? A ASN 4 5 1 Y 1 A ASN 4 ? A ASN 5 6 1 Y 1 A LYS 5 ? A LYS 6 7 1 Y 1 A ILE 6 ? A ILE 7 8 1 Y 1 A LYS 7 ? A LYS 8 9 1 Y 1 A ARG 8 ? A ARG 9 10 1 Y 1 A LYS 9 ? A LYS 10 11 1 Y 1 A ASP 10 ? A ASP 11 12 1 Y 1 A ALA 11 ? A ALA 12 13 1 Y 1 A THR 57 ? A THR 58 14 1 Y 1 A PHE 58 ? A PHE 59 15 1 Y 1 A THR 59 ? A THR 60 16 1 Y 1 A ASP 60 ? A ASP 61 17 1 Y 1 A GLU 61 ? A GLU 62 18 1 Y 1 A VAL 62 ? A VAL 63 19 1 Y 1 A SER 63 ? A SER 64 20 1 Y 1 A THR 64 ? A THR 65 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #