HEADER CELL ADHESION 20-DEC-07 3BQK TITLE STRUCTURE OF A CHONDROITIN SULPHATE BINDING DBL3X FROM A VAR2CSA TITLE 2 ENCODED PFEMP1 PROTEIN IN COMPLEX WITH SULPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ERYTHROCYTE MEMBRANE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DBL3X DOMAIN; COMPND 5 SYNONYM: PFEMP1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 STRAIN: A4; SOURCE 5 GENE: VAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MALARIA, PREGNANCY, VAR2CSA ENCODED PFEMP1 PROTEIN, DBL3X DOMAIN, KEYWDS 2 CHONDROITIN SULPHATE A, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.K.HIGGINS REVDAT 4 19-MAR-14 3BQK 1 JRNL REVDAT 3 13-JUL-11 3BQK 1 VERSN REVDAT 2 24-FEB-09 3BQK 1 VERSN REVDAT 1 24-JUN-08 3BQK 0 JRNL AUTH M.K.HIGGINS JRNL TITL THE STRUCTURE OF A CHONDROITIN SULFATE-BINDING DOMAIN JRNL TITL 2 IMPORTANT IN PLACENTAL MALARIA. JRNL REF J.BIOL.CHEM. V. 283 21842 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550531 JRNL DOI 10.1074/JBC.C800086200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.054 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2793 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3750 ; 1.087 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 7.811 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;36.609 ;25.755 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;14.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.690 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2093 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1426 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1916 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.317 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1743 ; 0.663 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2687 ; 1.055 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 1.419 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1063 ; 2.162 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB045843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : 0.79100 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4K, 20MM HEPES PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.62900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.27750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.62900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.27750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1388 REMARK 465 ASP A 1389 REMARK 465 LYS A 1390 REMARK 465 ILE A 1391 REMARK 465 GLY A 1392 REMARK 465 GLY A 1393 REMARK 465 VAL A 1394 REMARK 465 GLY A 1395 REMARK 465 SER A 1396 REMARK 465 GLY A 1444 REMARK 465 ASN A 1445 REMARK 465 ASP A 1446 REMARK 465 GLU A 1447 REMARK 465 ILE A 1478 REMARK 465 ASN A 1479 REMARK 465 GLY A 1480 REMARK 465 LYS A 1481 REMARK 465 ASN A 1482 REMARK 465 LYS A 1490 REMARK 465 SER A 1491 REMARK 465 GLY A 1492 REMARK 465 GLN A 1493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1768 O HOH A 1779 0.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1336 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1220 48.50 -84.58 REMARK 500 ASN A1222 47.07 -96.70 REMARK 500 ALA A1263 163.42 178.15 REMARK 500 SER A1362 -148.25 -82.58 REMARK 500 ASN A1364 38.58 -99.28 REMARK 500 LYS A1426 -5.54 -154.25 REMARK 500 SER A1430 -167.31 -164.50 REMARK 500 LYS A1484 46.19 -150.46 REMARK 500 CYS A1574 37.74 -98.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 1335 PRO A 1336 -112.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PRO A1336 47.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1700 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1711 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1784 DISTANCE = 5.64 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BQI RELATED DB: PDB REMARK 900 RELATED ID: 3BQL RELATED DB: PDB DBREF 3BQK A 1218 1577 UNP Q6UDW7 Q6UDW7_PLAFA 1218 1577 SEQRES 1 A 360 SER CYS ASP LEU ASN ALA THR ASN TYR ILE ARG GLY CYS SEQRES 2 A 360 GLN SER LYS THR TYR ASP GLY LYS ILE PHE PRO GLY LYS SEQRES 3 A 360 GLY GLY GLU LYS GLN TRP ILE CYS LYS ASP THR ILE ILE SEQRES 4 A 360 HIS GLY ASP THR ASN GLY ALA CYS ILE PRO PRO ARG THR SEQRES 5 A 360 GLN ASN LEU CYS VAL GLY GLU LEU TRP ASP LYS SER TYR SEQRES 6 A 360 GLY GLY ARG SER ASN ILE LYS ASN ASP THR LYS GLU LEU SEQRES 7 A 360 LEU LYS GLU LYS ILE LYS ASN ALA ILE HIS LYS GLU THR SEQRES 8 A 360 GLU LEU LEU TYR GLU TYR HIS ASP THR GLY THR ALA ILE SEQRES 9 A 360 ILE SER LYS ASN ASP LYS LYS GLY GLN LYS GLY LYS ASN SEQRES 10 A 360 ASP PRO ASN GLY LEU PRO LYS GLY PHE CYS HIS ALA VAL SEQRES 11 A 360 GLN ARG SER PHE ILE ASP TYR LYS ASN MET ILE LEU GLY SEQRES 12 A 360 THR SER VAL ASN ILE TYR GLU HIS ILE GLY LYS LEU GLN SEQRES 13 A 360 GLU ASP ILE LYS LYS ILE ILE GLU LYS GLY THR PRO GLN SEQRES 14 A 360 GLN LYS ASP LYS ILE GLY GLY VAL GLY SER SER THR GLU SEQRES 15 A 360 ASN VAL ASN ALA TRP TRP LYS GLY ILE GLU ARG GLU MET SEQRES 16 A 360 TRP ASP ALA VAL ARG CYS ALA ILE THR LYS ILE ASN LYS SEQRES 17 A 360 LYS ASN ASN ASN SER ILE PHE ASN GLY ASP GLU CYS GLY SEQRES 18 A 360 VAL SER PRO PRO THR GLY ASN ASP GLU ASP GLN SER VAL SEQRES 19 A 360 SER TRP PHE LYS GLU TRP GLY GLU GLN PHE CYS ILE GLU SEQRES 20 A 360 ARG LEU ARG TYR GLU GLN ASN ILE ARG GLU ALA CYS THR SEQRES 21 A 360 ILE ASN GLY LYS ASN GLU LYS LYS CYS ILE ASN SER LYS SEQRES 22 A 360 SER GLY GLN GLY ASP LYS ILE GLN GLY ALA CYS LYS ARG SEQRES 23 A 360 LYS CYS GLU LYS TYR LYS LYS TYR ILE SER GLU LYS LYS SEQRES 24 A 360 GLN GLU TRP ASP LYS GLN LYS THR LYS TYR GLU ASN LYS SEQRES 25 A 360 TYR VAL GLY LYS SER ALA SER ASP LEU LEU LYS GLU ASN SEQRES 26 A 360 TYR PRO GLU CYS ILE SER ALA ASN PHE ASP PHE ILE PHE SEQRES 27 A 360 ASN ASP ASN ILE GLU TYR LYS THR TYR TYR PRO TYR GLY SEQRES 28 A 360 ASP TYR SER SER ILE CYS SER CYS GLU HET SO4 A 1 5 HET GOL A 2 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 O4 S 2- FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *232(H2 O) HELIX 1 1 PRO A 1266 ASN A 1271 1 6 HELIX 2 2 VAL A 1274 GLU A 1276 5 3 HELIX 3 3 LYS A 1280 GLY A 1284 5 5 HELIX 4 4 THR A 1292 THR A 1317 1 26 HELIX 5 5 ALA A 1320 LYS A 1324 5 5 HELIX 6 6 GLY A 1342 LEU A 1359 1 18 HELIX 7 7 TYR A 1366 THR A 1384 1 19 HELIX 8 8 SER A 1397 LYS A 1422 1 26 HELIX 9 9 ILE A 1423 LYS A 1426 5 4 HELIX 10 10 ASP A 1448 THR A 1477 1 30 HELIX 11 11 GLN A 1498 TYR A 1530 1 33 HELIX 12 12 SER A 1534 TYR A 1543 1 10 HELIX 13 13 PRO A 1544 ILE A 1547 5 4 HELIX 14 14 ASN A 1550 PHE A 1555 1 6 HELIX 15 15 ASN A 1558 TYR A 1565 1 8 HELIX 16 16 TYR A 1567 SER A 1571 5 5 SHEET 1 A 2 ILE A1250 HIS A1257 0 SHEET 2 A 2 THR A1260 ILE A1265 -1 O GLY A1262 N ILE A1255 SHEET 1 B 2 TRP A1278 ASP A1279 0 SHEET 2 B 2 ARG A1285 SER A1286 -1 O ARG A1285 N ASP A1279 SHEET 1 C 2 CYS A1486 ILE A1487 0 SHEET 2 C 2 LYS A1496 ILE A1497 -1 O LYS A1496 N ILE A1487 SSBOND 1 CYS A 1219 CYS A 1418 1555 1555 2.04 SSBOND 2 CYS A 1230 CYS A 1273 1555 1555 2.04 SSBOND 3 CYS A 1251 CYS A 1264 1555 1555 2.04 SSBOND 4 CYS A 1344 CYS A 1437 1555 1555 2.05 SSBOND 5 CYS A 1462 CYS A 1546 1555 1555 2.06 SSBOND 6 CYS A 1476 CYS A 1501 1555 1555 2.04 SSBOND 7 CYS A 1486 CYS A 1576 1555 1555 2.03 SSBOND 8 CYS A 1505 CYS A 1574 1555 1555 2.04 CISPEP 1 PHE A 1240 PRO A 1241 0 8.58 CISPEP 2 PRO A 1442 THR A 1443 0 -12.51 SITE 1 AC1 4 LYS A1324 LYS A1328 GLY A1329 ARG A1467 SITE 1 AC2 9 HIS A1345 GLN A1348 ILE A1352 PRO A1442 SITE 2 AC2 9 THR A1443 SER A1452 LYS A1455 HOH A1584 SITE 3 AC2 9 HOH A1631 CRYST1 41.258 86.555 92.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010831 0.00000