data_3BQX # _entry.id 3BQX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BQX RCSB RCSB045856 WWPDB D_1000045856 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB NYSGXRC-11003j . unspecified PDB 2QHO 'Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin' unspecified PDB 2RBB 'Crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase family enzyme from Burkholderia phytofirmans PsJN' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BQX _pdbx_database_status.recvd_initial_deposition_date 2007-12-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rao, K.N.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'High resolution crystal structure of a glyoxalase-related enzyme from Fulvimarina pelagi.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rao, K.N.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 3BQX _cell.length_a 53.930 _cell.length_b 69.750 _cell.length_c 83.070 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BQX _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glyoxalase-related enzyme' 16429.898 1 ? ? ? ? 2 water nat water 18.015 158 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLQQVAVITLGIGDLEASARFYGEGFGWAPVFRNPEIIFYQ(MSE)NGFVLATWLVQNLQEDVGVAVTSRPGS (MSE)ALAHNVRAETEVAPL(MSE)ERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNPVWPIGADGSVTFAAK EGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLQQVAVITLGIGDLEASARFYGEGFGWAPVFRNPEIIFYQMNGFVLATWLVQNLQEDVGVAVTSRPGSMALAHNVRAE TEVAPLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNPVWPIGADGSVTFAAKEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11003j # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 GLN n 1 5 GLN n 1 6 VAL n 1 7 ALA n 1 8 VAL n 1 9 ILE n 1 10 THR n 1 11 LEU n 1 12 GLY n 1 13 ILE n 1 14 GLY n 1 15 ASP n 1 16 LEU n 1 17 GLU n 1 18 ALA n 1 19 SER n 1 20 ALA n 1 21 ARG n 1 22 PHE n 1 23 TYR n 1 24 GLY n 1 25 GLU n 1 26 GLY n 1 27 PHE n 1 28 GLY n 1 29 TRP n 1 30 ALA n 1 31 PRO n 1 32 VAL n 1 33 PHE n 1 34 ARG n 1 35 ASN n 1 36 PRO n 1 37 GLU n 1 38 ILE n 1 39 ILE n 1 40 PHE n 1 41 TYR n 1 42 GLN n 1 43 MSE n 1 44 ASN n 1 45 GLY n 1 46 PHE n 1 47 VAL n 1 48 LEU n 1 49 ALA n 1 50 THR n 1 51 TRP n 1 52 LEU n 1 53 VAL n 1 54 GLN n 1 55 ASN n 1 56 LEU n 1 57 GLN n 1 58 GLU n 1 59 ASP n 1 60 VAL n 1 61 GLY n 1 62 VAL n 1 63 ALA n 1 64 VAL n 1 65 THR n 1 66 SER n 1 67 ARG n 1 68 PRO n 1 69 GLY n 1 70 SER n 1 71 MSE n 1 72 ALA n 1 73 LEU n 1 74 ALA n 1 75 HIS n 1 76 ASN n 1 77 VAL n 1 78 ARG n 1 79 ALA n 1 80 GLU n 1 81 THR n 1 82 GLU n 1 83 VAL n 1 84 ALA n 1 85 PRO n 1 86 LEU n 1 87 MSE n 1 88 GLU n 1 89 ARG n 1 90 LEU n 1 91 VAL n 1 92 ALA n 1 93 ALA n 1 94 GLY n 1 95 GLY n 1 96 GLN n 1 97 LEU n 1 98 LEU n 1 99 ARG n 1 100 PRO n 1 101 ALA n 1 102 ASP n 1 103 ALA n 1 104 PRO n 1 105 PRO n 1 106 HIS n 1 107 GLY n 1 108 GLY n 1 109 LEU n 1 110 ARG n 1 111 GLY n 1 112 TYR n 1 113 VAL n 1 114 ALA n 1 115 ASP n 1 116 PRO n 1 117 ASP n 1 118 GLY n 1 119 HIS n 1 120 ILE n 1 121 TRP n 1 122 GLU n 1 123 ILE n 1 124 ALA n 1 125 PHE n 1 126 ASN n 1 127 PRO n 1 128 VAL n 1 129 TRP n 1 130 PRO n 1 131 ILE n 1 132 GLY n 1 133 ALA n 1 134 ASP n 1 135 GLY n 1 136 SER n 1 137 VAL n 1 138 THR n 1 139 PHE n 1 140 ALA n 1 141 ALA n 1 142 LYS n 1 143 GLU n 1 144 GLY n 1 145 HIS n 1 146 HIS n 1 147 HIS n 1 148 HIS n 1 149 HIS n 1 150 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Fulvimarina _entity_src_gen.pdbx_gene_src_gene FP2506_05986 _entity_src_gen.gene_src_species 'Fulvimarina pelagi' _entity_src_gen.gene_src_strain HTCC2506 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Fulvimarina pelagi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 314231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0G7J9_9RHIZ _struct_ref.pdbx_db_accession Q0G7J9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QQVAVITLGIGDLEASARFYGEGFGWAPVFRNPEIIFYQMNGFVLATWLVQNLQEDVGVAVTSRPGSMALAHNVRAETEV APLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNPVWPIGADGSVTFAAK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BQX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0G7J9 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 140 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 142 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BQX MSE A 1 ? UNP Q0G7J9 ? ? 'expression tag' 1 1 1 3BQX SER A 2 ? UNP Q0G7J9 ? ? 'expression tag' 2 2 1 3BQX LEU A 3 ? UNP Q0G7J9 ? ? 'expression tag' 3 3 1 3BQX GLU A 143 ? UNP Q0G7J9 ? ? 'expression tag' 143 4 1 3BQX GLY A 144 ? UNP Q0G7J9 ? ? 'expression tag' 144 5 1 3BQX HIS A 145 ? UNP Q0G7J9 ? ? 'expression tag' 145 6 1 3BQX HIS A 146 ? UNP Q0G7J9 ? ? 'expression tag' 146 7 1 3BQX HIS A 147 ? UNP Q0G7J9 ? ? 'expression tag' 147 8 1 3BQX HIS A 148 ? UNP Q0G7J9 ? ? 'expression tag' 148 9 1 3BQX HIS A 149 ? UNP Q0G7J9 ? ? 'expression tag' 149 10 1 3BQX HIS A 150 ? UNP Q0G7J9 ? ? 'expression tag' 150 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BQX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '2.0M Ammonium sulfate, 10 mM Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-12-12 _diffrn_detector.details Diamond # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9798 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9798 # _reflns.entry_id 3BQX _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 17.07 _reflns.d_resolution_high 1.32 _reflns.number_obs 37108 _reflns.number_all 37108 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.3 _reflns.B_iso_Wilson_estimate 15.8 _reflns.pdbx_redundancy 14.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.32 _reflns_shell.d_res_low 1.39 _reflns_shell.percent_possible_all 92.7 _reflns_shell.Rmerge_I_obs 0.861 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 12.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5011 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BQX _refine.ls_number_reflns_obs 29094 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 686058.09 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.07 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 93.2 _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.9 _refine.ls_number_reflns_R_free 1147 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 19.6 _refine.aniso_B[1][1] 1.01 _refine.aniso_B[2][2] -0.94 _refine.aniso_B[3][3] -0.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37869 _refine.solvent_model_param_bsol 46.7993 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3BQX _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1052 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1210 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 17.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.10 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.67 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.40 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.47 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.40 _refine_ls_shell.d_res_low 1.49 _refine_ls_shell.number_reflns_R_work 3941 _refine_ls_shell.R_factor_R_work 0.283 _refine_ls_shell.percent_reflns_obs 80.0 _refine_ls_shell.R_factor_R_free 0.298 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 3.9 _refine_ls_shell.number_reflns_R_free 159 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 &_1_PARAMETER_INFILE_5 &_1_TOPOLOGY_INFILE_5 'X-RAY DIFFRACTION' # _struct.entry_id 3BQX _struct.title 'High resolution crystal structure of a glyoxalase-related enzyme from Fulvimarina pelagi' _struct.pdbx_descriptor 'Glyoxalase-related enzyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BQX _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;VOC superfamily, glyoxalase, Fulvimarina pelagi, PSI-2, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 15 ? GLY A 26 ? ASP A 15 GLY A 26 1 ? 12 HELX_P HELX_P2 2 VAL A 53 ? GLY A 61 ? VAL A 53 GLY A 61 1 ? 9 HELX_P HELX_P3 3 ALA A 79 ? THR A 81 ? ALA A 79 THR A 81 5 ? 3 HELX_P HELX_P4 4 GLU A 82 ? ALA A 93 ? GLU A 82 ALA A 93 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 42 C ? ? ? 1_555 A MSE 43 N ? ? A GLN 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 43 C ? ? ? 1_555 A ASN 44 N ? ? A MSE 43 A ASN 44 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A SER 70 C ? ? ? 1_555 A MSE 71 N ? ? A SER 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 71 C ? ? ? 1_555 A ALA 72 N ? ? A MSE 71 A ALA 72 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A LEU 86 C ? ? ? 1_555 A MSE 87 N ? ? A LEU 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 87 C ? ? ? 1_555 A GLU 88 N ? ? A MSE 87 A GLU 88 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 8 ? ILE A 13 ? VAL A 8 ILE A 13 A 2 VAL A 47 ? LEU A 52 ? VAL A 47 LEU A 52 A 3 ILE A 38 ? GLN A 42 ? ILE A 38 GLN A 42 A 4 PHE A 33 ? ARG A 34 ? PHE A 33 ARG A 34 B 1 ALA A 72 ? ASN A 76 ? ALA A 72 ASN A 76 B 2 ILE A 120 ? PHE A 125 ? ILE A 120 PHE A 125 B 3 LEU A 109 ? ALA A 114 ? LEU A 109 ALA A 114 B 4 GLN A 96 ? ASP A 102 ? GLN A 96 ASP A 102 C 1 ILE A 131 ? GLY A 132 ? ILE A 131 GLY A 132 C 2 GLY A 135 ? VAL A 137 ? GLY A 135 VAL A 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 9 ? N ILE A 9 O ALA A 49 ? O ALA A 49 A 2 3 O LEU A 48 ? O LEU A 48 N TYR A 41 ? N TYR A 41 A 3 4 O PHE A 40 ? O PHE A 40 N PHE A 33 ? N PHE A 33 B 1 2 N LEU A 73 ? N LEU A 73 O GLU A 122 ? O GLU A 122 B 2 3 O PHE A 125 ? O PHE A 125 N LEU A 109 ? N LEU A 109 B 3 4 O ALA A 114 ? O ALA A 114 N GLN A 96 ? N GLN A 96 C 1 2 N GLY A 132 ? N GLY A 132 O SER A 136 ? O SER A 136 # _database_PDB_matrix.entry_id 3BQX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BQX _atom_sites.fract_transf_matrix[1][1] 0.018543 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014337 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012038 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 MSE 43 43 43 MSE MSE A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 MSE 71 71 71 MSE MSE A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 MSE 87 87 87 MSE MSE A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 TRP 129 129 129 TRP TRP A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 LYS 142 142 ? ? ? A . n A 1 143 GLU 143 143 ? ? ? A . n A 1 144 GLY 144 144 ? ? ? A . n A 1 145 HIS 145 145 ? ? ? A . n A 1 146 HIS 146 146 ? ? ? A . n A 1 147 HIS 147 147 ? ? ? A . n A 1 148 HIS 148 148 ? ? ? A . n A 1 149 HIS 149 149 ? ? ? A . n A 1 150 HIS 150 150 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH TIP A . B 2 HOH 2 202 2 HOH TIP A . B 2 HOH 3 203 3 HOH TIP A . B 2 HOH 4 204 4 HOH TIP A . B 2 HOH 5 205 5 HOH TIP A . B 2 HOH 6 206 6 HOH TIP A . B 2 HOH 7 207 7 HOH TIP A . B 2 HOH 8 208 8 HOH TIP A . B 2 HOH 9 209 9 HOH TIP A . B 2 HOH 10 210 10 HOH TIP A . B 2 HOH 11 211 11 HOH TIP A . B 2 HOH 12 212 12 HOH TIP A . B 2 HOH 13 213 13 HOH TIP A . B 2 HOH 14 214 14 HOH TIP A . B 2 HOH 15 215 15 HOH TIP A . B 2 HOH 16 216 16 HOH TIP A . B 2 HOH 17 217 17 HOH TIP A . B 2 HOH 18 218 18 HOH TIP A . B 2 HOH 19 219 19 HOH TIP A . B 2 HOH 20 220 20 HOH TIP A . B 2 HOH 21 221 21 HOH TIP A . B 2 HOH 22 222 22 HOH TIP A . B 2 HOH 23 223 23 HOH TIP A . B 2 HOH 24 224 24 HOH TIP A . B 2 HOH 25 225 25 HOH TIP A . B 2 HOH 26 226 26 HOH TIP A . B 2 HOH 27 227 27 HOH TIP A . B 2 HOH 28 228 28 HOH TIP A . B 2 HOH 29 229 29 HOH TIP A . B 2 HOH 30 230 30 HOH TIP A . B 2 HOH 31 231 31 HOH TIP A . B 2 HOH 32 232 32 HOH TIP A . B 2 HOH 33 233 33 HOH TIP A . B 2 HOH 34 234 34 HOH TIP A . B 2 HOH 35 235 35 HOH TIP A . B 2 HOH 36 236 36 HOH TIP A . B 2 HOH 37 237 37 HOH TIP A . B 2 HOH 38 238 38 HOH TIP A . B 2 HOH 39 239 39 HOH TIP A . B 2 HOH 40 240 40 HOH TIP A . B 2 HOH 41 241 41 HOH TIP A . B 2 HOH 42 242 42 HOH TIP A . B 2 HOH 43 243 43 HOH TIP A . B 2 HOH 44 244 44 HOH TIP A . B 2 HOH 45 245 45 HOH TIP A . B 2 HOH 46 246 46 HOH TIP A . B 2 HOH 47 247 47 HOH TIP A . B 2 HOH 48 248 48 HOH TIP A . B 2 HOH 49 249 49 HOH TIP A . B 2 HOH 50 250 50 HOH TIP A . B 2 HOH 51 251 51 HOH TIP A . B 2 HOH 52 252 52 HOH TIP A . B 2 HOH 53 253 53 HOH TIP A . B 2 HOH 54 254 54 HOH TIP A . B 2 HOH 55 255 55 HOH TIP A . B 2 HOH 56 256 56 HOH TIP A . B 2 HOH 57 257 57 HOH TIP A . B 2 HOH 58 258 58 HOH TIP A . B 2 HOH 59 259 59 HOH TIP A . B 2 HOH 60 260 60 HOH TIP A . B 2 HOH 61 261 61 HOH TIP A . B 2 HOH 62 262 62 HOH TIP A . B 2 HOH 63 263 63 HOH TIP A . B 2 HOH 64 264 64 HOH TIP A . B 2 HOH 65 265 65 HOH TIP A . B 2 HOH 66 266 66 HOH TIP A . B 2 HOH 67 267 67 HOH TIP A . B 2 HOH 68 268 68 HOH TIP A . B 2 HOH 69 269 69 HOH TIP A . B 2 HOH 70 270 70 HOH TIP A . B 2 HOH 71 271 71 HOH TIP A . B 2 HOH 72 272 72 HOH TIP A . B 2 HOH 73 273 73 HOH TIP A . B 2 HOH 74 274 74 HOH TIP A . B 2 HOH 75 275 75 HOH TIP A . B 2 HOH 76 276 76 HOH TIP A . B 2 HOH 77 277 77 HOH TIP A . B 2 HOH 78 278 78 HOH TIP A . B 2 HOH 79 279 79 HOH TIP A . B 2 HOH 80 280 80 HOH TIP A . B 2 HOH 81 281 81 HOH TIP A . B 2 HOH 82 282 82 HOH TIP A . B 2 HOH 83 283 83 HOH TIP A . B 2 HOH 84 284 84 HOH TIP A . B 2 HOH 85 285 85 HOH TIP A . B 2 HOH 86 286 86 HOH TIP A . B 2 HOH 87 287 87 HOH TIP A . B 2 HOH 88 288 88 HOH TIP A . B 2 HOH 89 289 89 HOH TIP A . B 2 HOH 90 290 90 HOH TIP A . B 2 HOH 91 291 91 HOH TIP A . B 2 HOH 92 292 92 HOH TIP A . B 2 HOH 93 293 93 HOH TIP A . B 2 HOH 94 294 94 HOH TIP A . B 2 HOH 95 295 95 HOH TIP A . B 2 HOH 96 296 96 HOH TIP A . B 2 HOH 97 297 97 HOH TIP A . B 2 HOH 98 298 98 HOH TIP A . B 2 HOH 99 299 99 HOH TIP A . B 2 HOH 100 300 100 HOH TIP A . B 2 HOH 101 301 101 HOH TIP A . B 2 HOH 102 302 102 HOH TIP A . B 2 HOH 103 303 103 HOH TIP A . B 2 HOH 104 304 104 HOH TIP A . B 2 HOH 105 305 106 HOH TIP A . B 2 HOH 106 306 107 HOH TIP A . B 2 HOH 107 307 108 HOH TIP A . B 2 HOH 108 308 109 HOH TIP A . B 2 HOH 109 309 110 HOH TIP A . B 2 HOH 110 310 111 HOH TIP A . B 2 HOH 111 311 113 HOH TIP A . B 2 HOH 112 312 114 HOH TIP A . B 2 HOH 113 313 115 HOH TIP A . B 2 HOH 114 314 117 HOH TIP A . B 2 HOH 115 315 118 HOH TIP A . B 2 HOH 116 316 119 HOH TIP A . B 2 HOH 117 317 120 HOH TIP A . B 2 HOH 118 318 121 HOH TIP A . B 2 HOH 119 319 122 HOH TIP A . B 2 HOH 120 320 124 HOH TIP A . B 2 HOH 121 321 125 HOH TIP A . B 2 HOH 122 322 127 HOH TIP A . B 2 HOH 123 323 128 HOH TIP A . B 2 HOH 124 324 129 HOH TIP A . B 2 HOH 125 325 130 HOH TIP A . B 2 HOH 126 326 131 HOH TIP A . B 2 HOH 127 327 132 HOH TIP A . B 2 HOH 128 328 133 HOH TIP A . B 2 HOH 129 329 135 HOH TIP A . B 2 HOH 130 330 136 HOH TIP A . B 2 HOH 131 331 137 HOH TIP A . B 2 HOH 132 332 138 HOH TIP A . B 2 HOH 133 333 139 HOH TIP A . B 2 HOH 134 334 142 HOH TIP A . B 2 HOH 135 335 144 HOH TIP A . B 2 HOH 136 336 145 HOH TIP A . B 2 HOH 137 337 146 HOH TIP A . B 2 HOH 138 338 148 HOH TIP A . B 2 HOH 139 339 149 HOH TIP A . B 2 HOH 140 340 150 HOH TIP A . B 2 HOH 141 341 152 HOH TIP A . B 2 HOH 142 342 153 HOH TIP A . B 2 HOH 143 343 155 HOH TIP A . B 2 HOH 144 344 157 HOH TIP A . B 2 HOH 145 345 159 HOH TIP A . B 2 HOH 146 346 160 HOH TIP A . B 2 HOH 147 347 161 HOH TIP A . B 2 HOH 148 348 162 HOH TIP A . B 2 HOH 149 349 163 HOH TIP A . B 2 HOH 150 350 164 HOH TIP A . B 2 HOH 151 351 165 HOH TIP A . B 2 HOH 152 352 166 HOH TIP A . B 2 HOH 153 353 168 HOH TIP A . B 2 HOH 154 354 169 HOH TIP A . B 2 HOH 155 355 171 HOH TIP A . B 2 HOH 156 356 172 HOH TIP A . B 2 HOH 157 357 173 HOH TIP A . B 2 HOH 158 358 174 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 43 A MSE 43 ? MET SELENOMETHIONINE 2 A MSE 71 A MSE 71 ? MET SELENOMETHIONINE 3 A MSE 87 A MSE 87 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 5010 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 69.7500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 4 'Structure model' citation_author 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_audit_author.identifier_ORCID' 3 4 'Structure model' '_citation_author.identifier_ORCID' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MAR345 'data collection' CCD ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 SHELX phasing . ? 5 SHARP phasing . ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 67 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 67 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_565 _pdbx_validate_symm_contact.dist 1.87 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 43 ? ? -108.62 -165.16 2 1 ASP A 134 ? ? -117.00 55.73 3 1 SER A 136 ? ? 26.12 96.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A LYS 142 ? A LYS 142 4 1 Y 1 A GLU 143 ? A GLU 143 5 1 Y 1 A GLY 144 ? A GLY 144 6 1 Y 1 A HIS 145 ? A HIS 145 7 1 Y 1 A HIS 146 ? A HIS 146 8 1 Y 1 A HIS 147 ? A HIS 147 9 1 Y 1 A HIS 148 ? A HIS 148 10 1 Y 1 A HIS 149 ? A HIS 149 11 1 Y 1 A HIS 150 ? A HIS 150 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #