HEADER DNA BINDING PROTEIN/DNA 21-DEC-07 3BRF TITLE CSL (LAG-1) BOUND TO DNA WITH LIN-12 RAM PEPTIDE, C2221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: LIN-12 AND GLP-1 PHENOTYPE PROTEIN 1, ISOFORM A; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: CORE DOMAIN; COMPND 15 SYNONYM: DNA-BINDING PROTEIN LAG-1, LAG-1 PROTEIN; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: PROTEIN LIN-12; COMPND 19 CHAIN: D; COMPND 20 FRAGMENT: RAM PEPTIDE; COMPND 21 SYNONYM: ABNORMAL CELL LINEAGE PROTEIN 12; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 7 ORGANISM_TAXID: 6239; SOURCE 8 GENE: LAG-1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1; SOURCE 14 MOL_ID: 4; SOURCE 15 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 16 ORGANISM_TAXID: 6239; SOURCE 17 GENE: LIN-12; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEIN-DNA COMPLEX, SIGNALING, TRANSCRIPTION, NOTCH, DNA-BINDING, KEYWDS 2 ANK REPEAT, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, EGF-LIKE DOMAIN, KEYWDS 3 GLYCOPROTEIN, MEMBRANE, TRANSMEMBRANE, DNA BINDING PROTEIN-DNA KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.J.WILSON,R.A.KOVALL REVDAT 7 21-FEB-24 3BRF 1 HETSYN REVDAT 6 29-JUL-20 3BRF 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 SITE REVDAT 5 25-OCT-17 3BRF 1 REMARK REVDAT 4 24-FEB-09 3BRF 1 VERSN REVDAT 3 03-JUN-08 3BRF 1 JRNL REVDAT 2 22-APR-08 3BRF 1 JRNL REVDAT 1 01-APR-08 3BRF 0 JRNL AUTH D.R.FRIEDMANN,J.J.WILSON,R.A.KOVALL JRNL TITL RAM-INDUCED ALLOSTERY FACILITATES ASSEMBLY OF A NOTCH JRNL TITL 2 PATHWAY ACTIVE TRANSCRIPTION COMPLEX. JRNL REF J.BIOL.CHEM. V. 283 14781 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18381292 JRNL DOI 10.1074/JBC.M709501200 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0020 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1255 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3478 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.455 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.021 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4272 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5897 ; 1.481 ; 2.135 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.913 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;38.813 ;23.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;20.076 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3005 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1595 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2809 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2211 ; 0.465 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3516 ; 0.835 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2526 ; 1.246 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2379 ; 1.843 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0094 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, MGCL2, PEG 3350, SORBITOL, REMARK 280 PH 6.0, UNDER OIL MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.47200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.98600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.47200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.98600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.81500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.47200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.98600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.81500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.47200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.98600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 GLY A 187 REMARK 465 PRO A 188 REMARK 465 LEU A 189 REMARK 465 GLY A 190 REMARK 465 SER A 191 REMARK 465 GLY A 192 REMARK 465 ASP A 193 REMARK 465 SER A 194 REMARK 465 VAL A 195 REMARK 465 GLN A 196 REMARK 465 LYS A 264 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 465 ALA A 267 REMARK 465 GLN A 268 REMARK 465 LYS A 269 REMARK 465 ASP A 270 REMARK 465 ALA A 271 REMARK 465 ALA A 272 REMARK 465 ILE A 273 REMARK 465 GLU A 274 REMARK 465 ASN A 275 REMARK 465 ASP A 276 REMARK 465 PRO A 277 REMARK 465 ILE A 278 REMARK 465 HIS A 279 REMARK 465 GLU A 280 REMARK 465 GLN A 281 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 SER A 305 REMARK 465 THR A 306 REMARK 465 GLY A 307 REMARK 465 LYS A 308 REMARK 465 VAL A 309 REMARK 465 ARG A 310 REMARK 465 HIS A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 313 REMARK 465 ASP A 314 REMARK 465 GLN A 315 REMARK 465 ARG A 316 REMARK 465 GLN A 317 REMARK 465 ASP A 318 REMARK 465 MET A 376 REMARK 465 LYS A 377 REMARK 465 ASN A 378 REMARK 465 THR A 379 REMARK 465 ARG A 434 REMARK 465 GLY A 435 REMARK 465 LEU A 436 REMARK 465 LEU A 661 REMARK 465 GLU A 662 REMARK 465 ARG A 663 REMARK 465 SER D 937 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 337 O HOH A 692 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 550 CD GLU A 550 OE2 0.077 REMARK 500 ARG A 644 CZ ARG A 644 NH1 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 1 C1' - O4' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DT B 1 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG B 10 C2 - N3 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA B 12 N1 - C6 - N6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG B 14 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DT C 5 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT C 7 N1 - C2 - N3 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 7 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC C 10 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 200 -32.36 -34.78 REMARK 500 CYS A 381 -75.09 -39.07 REMARK 500 LYS A 382 -21.77 79.02 REMARK 500 ARG A 399 39.86 28.31 REMARK 500 SER A 400 29.44 40.38 REMARK 500 GLN A 401 106.08 174.34 REMARK 500 THR A 402 -43.65 -139.07 REMARK 500 VAL A 403 -40.14 176.97 REMARK 500 ASP A 431 -126.60 -106.79 REMARK 500 GLU A 438 164.76 171.39 REMARK 500 THR A 439 -77.25 -146.32 REMARK 500 LYS A 476 111.47 44.00 REMARK 500 GLN A 477 -7.60 54.12 REMARK 500 ASP A 482 121.25 -37.35 REMARK 500 HIS A 512 -117.09 43.34 REMARK 500 MET A 552 -127.68 -81.01 REMARK 500 HIS A 573 -169.94 -128.55 REMARK 500 ASN A 589 36.22 -93.12 REMARK 500 THR A 602 -129.08 -115.73 REMARK 500 PHE A 603 112.63 173.56 REMARK 500 SER A 605 -156.60 -159.87 REMARK 500 LEU A 609 94.58 -161.07 REMARK 500 ASN A 621 -88.38 -151.98 REMARK 500 GLU A 622 18.07 -163.35 REMARK 500 GLN A 623 -32.72 -134.22 REMARK 500 HIS A 625 -56.83 171.20 REMARK 500 ASP A 646 -38.06 -32.87 REMARK 500 TYR A 658 83.67 -66.40 REMARK 500 LYS A 659 -56.98 -126.90 REMARK 500 ALA D 942 118.91 -166.90 REMARK 500 PRO D 948 -174.63 -69.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 401 THR A 402 144.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BRD RELATED DB: PDB REMARK 900 RELATED ID: 3BRG RELATED DB: PDB DBREF 3BRF A 192 663 UNP Q9TYY1 Q9TYY1_CAEEL 192 663 DBREF 3BRF D 938 950 UNP P14585 LIN12_CAEEL 938 950 DBREF 3BRF B 1 15 PDB 3BRF 3BRF 1 15 DBREF 3BRF C 1 15 PDB 3BRF 3BRF 1 15 SEQADV 3BRF SER A 186 UNP Q9TYY1 EXPRESSION TAG SEQADV 3BRF GLY A 187 UNP Q9TYY1 EXPRESSION TAG SEQADV 3BRF PRO A 188 UNP Q9TYY1 EXPRESSION TAG SEQADV 3BRF LEU A 189 UNP Q9TYY1 EXPRESSION TAG SEQADV 3BRF GLY A 190 UNP Q9TYY1 EXPRESSION TAG SEQADV 3BRF SER A 191 UNP Q9TYY1 EXPRESSION TAG SEQADV 3BRF SER D 937 UNP P14585 EXPRESSION TAG SEQRES 1 B 15 DT DT DA DC DT DG DT DG DG DG DA DA DA SEQRES 2 B 15 DG DA SEQRES 1 C 15 DA DA DT DC DT DT DT DC DC DC DA DC DA SEQRES 2 C 15 DG DT SEQRES 1 A 478 SER GLY PRO LEU GLY SER GLY ASP SER VAL GLN SER LEU SEQRES 2 A 478 THR SER ASP ARG MET ILE ASP PHE LEU SER ASN LYS GLU SEQRES 3 A 478 LYS TYR GLU CYS VAL ILE SER ILE PHE HIS ALA LYS VAL SEQRES 4 A 478 ALA GLN LYS SER TYR GLY ASN GLU LYS ARG PHE PHE CYS SEQRES 5 A 478 PRO PRO PRO CYS ILE TYR LEU ILE GLY GLN GLY TRP LYS SEQRES 6 A 478 LEU LYS LYS ASP ARG VAL ALA GLN LEU TYR LYS THR LEU SEQRES 7 A 478 LYS ALA SER ALA GLN LYS ASP ALA ALA ILE GLU ASN ASP SEQRES 8 A 478 PRO ILE HIS GLU GLN GLN ALA THR GLU LEU VAL ALA TYR SEQRES 9 A 478 ILE GLY ILE GLY SER ASP THR SER GLU ARG GLN GLN LEU SEQRES 10 A 478 ASP PHE SER THR GLY LYS VAL ARG HIS PRO GLY ASP GLN SEQRES 11 A 478 ARG GLN ASP PRO ASN ILE TYR ASP TYR CYS ALA ALA LYS SEQRES 12 A 478 THR LEU TYR ILE SER ASP SER ASP LYS ARG LYS TYR PHE SEQRES 13 A 478 ASP LEU ASN ALA GLN PHE PHE TYR GLY CYS GLY MET GLU SEQRES 14 A 478 ILE GLY GLY PHE VAL SER GLN ARG ILE LYS VAL ILE SER SEQRES 15 A 478 LYS PRO SER LYS LYS LYS GLN SER MET LYS ASN THR ASP SEQRES 16 A 478 CYS LYS TYR LEU CYS ILE ALA SER GLY THR LYS VAL ALA SEQRES 17 A 478 LEU PHE ASN ARG LEU ARG SER GLN THR VAL SER THR ARG SEQRES 18 A 478 TYR LEU HIS VAL GLU GLY ASN ALA PHE HIS ALA SER SER SEQRES 19 A 478 THR LYS TRP GLY ALA PHE THR ILE HIS LEU PHE ASP ASP SEQRES 20 A 478 GLU ARG GLY LEU GLN GLU THR ASP ASN PHE ALA VAL ARG SEQRES 21 A 478 ASP GLY PHE VAL TYR TYR GLY SER VAL VAL LYS LEU VAL SEQRES 22 A 478 ASP SER VAL THR GLY ILE ALA LEU PRO ARG LEU ARG ILE SEQRES 23 A 478 ARG LYS VAL ASP LYS GLN GLN VAL ILE LEU ASP ALA SER SEQRES 24 A 478 CYS SER GLU GLU PRO VAL SER GLN LEU HIS LYS CYS ALA SEQRES 25 A 478 PHE GLN MET ILE ASP ASN GLU LEU VAL TYR LEU CYS LEU SEQRES 26 A 478 SER HIS ASP LYS ILE ILE GLN HIS GLN ALA THR ALA ILE SEQRES 27 A 478 ASN GLU HIS ARG HIS GLN ILE ASN ASP GLY ALA ALA TRP SEQRES 28 A 478 THR ILE ILE SER THR ASP LYS ALA GLU TYR ARG PHE PHE SEQRES 29 A 478 GLU ALA MET GLY GLN VAL ALA ASN PRO ILE SER PRO CYS SEQRES 30 A 478 PRO VAL VAL GLY SER LEU GLU VAL ASP GLY HIS GLY GLU SEQRES 31 A 478 ALA SER ARG VAL GLU LEU HIS GLY ARG ASP PHE LYS PRO SEQRES 32 A 478 ASN LEU LYS VAL TRP PHE GLY ALA THR PRO VAL GLU THR SEQRES 33 A 478 THR PHE ARG SER GLU GLU SER LEU HIS CYS SER ILE PRO SEQRES 34 A 478 PRO VAL SER GLN VAL ARG ASN GLU GLN THR HIS TRP MET SEQRES 35 A 478 PHE THR ASN ARG THR THR GLY ASP VAL GLU VAL PRO ILE SEQRES 36 A 478 SER LEU VAL ARG ASP ASP GLY VAL VAL TYR SER SER GLY SEQRES 37 A 478 LEU THR PHE SER TYR LYS SER LEU GLU ARG SEQRES 1 D 14 SER ARG MET ILE ASN ALA SER VAL TRP MET PRO PRO MET SEQRES 2 D 14 GLU HET SOR A 1 12 HET SOR A 2 12 HETNAM SOR SORBITOL HETSYN SOR D-SORBITOL; D-GLUCITOL FORMUL 5 SOR 2(C6 H14 O6) FORMUL 7 HOH *57(H2 O) HELIX 1 1 THR A 199 ASN A 209 1 11 HELIX 2 2 ASN A 209 GLU A 214 1 6 HELIX 3 3 GLN A 247 LYS A 261 1 15 HELIX 4 4 ASP A 482 GLU A 488 5 7 HELIX 5 5 ASN A 531 ALA A 535 5 5 HELIX 6 6 PRO A 615 ARG A 620 5 6 SHEET 1 A 8 LEU A 590 TRP A 593 0 SHEET 2 A 8 GLU A 637 ARG A 644 -1 O SER A 641 N TRP A 593 SHEET 3 A 8 VAL A 648 SER A 657 -1 O TYR A 650 N LEU A 642 SHEET 4 A 8 TRP A 536 GLU A 550 -1 N PHE A 549 O VAL A 649 SHEET 5 A 8 THR A 390 ARG A 397 -1 N ALA A 393 O ILE A 539 SHEET 6 A 8 PHE A 425 PHE A 430 -1 O PHE A 425 N VAL A 392 SHEET 7 A 8 ASN A 441 ARG A 445 -1 O ARG A 445 N LEU A 429 SHEET 8 A 8 MET D 939 ASN D 941 -1 O ILE D 940 N PHE A 442 SHEET 1 B 7 ALA A 414 SER A 418 0 SHEET 2 B 7 THR A 405 GLU A 411 -1 N HIS A 409 O HIS A 416 SHEET 3 B 7 THR A 390 ARG A 397 -1 N LEU A 394 O LEU A 408 SHEET 4 B 7 TRP A 536 GLU A 550 -1 O ILE A 539 N ALA A 393 SHEET 5 B 7 CYS A 215 ALA A 222 -1 N HIS A 221 O ASP A 542 SHEET 6 B 7 CYS A 241 ILE A 245 -1 O CYS A 241 N PHE A 220 SHEET 7 B 7 ILE A 321 ALA A 326 -1 O TYR A 322 N LEU A 244 SHEET 1 C10 MET D 939 ASN D 941 0 SHEET 2 C10 ASN A 441 ARG A 445 -1 N PHE A 442 O ILE D 940 SHEET 3 C10 PHE A 425 PHE A 430 -1 N LEU A 429 O ARG A 445 SHEET 4 C10 VAL A 454 ASP A 459 -1 O VAL A 458 N THR A 426 SHEET 5 C10 LEU A 469 LYS A 473 -1 O LEU A 469 N VAL A 455 SHEET 6 C10 HIS A 494 MET A 500 -1 O ALA A 497 N ARG A 472 SHEET 7 C10 TRP A 536 GLU A 550 -1 O TRP A 536 N CYS A 496 SHEET 8 C10 THR A 390 ARG A 397 -1 N ALA A 393 O ILE A 539 SHEET 9 C10 THR A 405 GLU A 411 -1 O LEU A 408 N LEU A 394 SHEET 10 C10 ALA A 414 SER A 418 -1 O HIS A 416 N HIS A 409 SHEET 1 D 3 VAL A 224 GLN A 226 0 SHEET 2 D 3 ILE A 363 ILE A 366 1 O ILE A 366 N ALA A 225 SHEET 3 D 3 TYR A 340 PHE A 341 -1 N PHE A 341 O ILE A 363 SHEET 1 E 4 GLN A 300 LEU A 302 0 SHEET 2 E 4 LEU A 286 GLY A 291 -1 N ALA A 288 O LEU A 302 SHEET 3 E 4 ASN A 344 TYR A 349 -1 O PHE A 348 N VAL A 287 SHEET 4 E 4 GLU A 354 VAL A 359 -1 O PHE A 358 N ALA A 345 SHEET 1 F 3 GLN A 478 ILE A 480 0 SHEET 2 F 3 ARG A 527 GLN A 529 -1 O HIS A 528 N VAL A 479 SHEET 3 F 3 THR A 521 ASN A 524 -1 N THR A 521 O GLN A 529 SHEET 1 G 2 VAL A 506 SER A 511 0 SHEET 2 G 2 LYS A 514 GLN A 519 -1 O HIS A 518 N TYR A 507 SHEET 1 H 3 VAL A 564 ASP A 571 0 SHEET 2 H 3 ARG A 578 ARG A 584 -1 O HIS A 582 N GLY A 566 SHEET 3 H 3 SER A 608 SER A 612 -1 O CYS A 611 N VAL A 579 CISPEP 1 CYS A 237 PRO A 238 0 0.75 CISPEP 2 GLU A 438 THR A 439 0 -8.12 CISPEP 3 SER A 560 PRO A 561 0 2.40 CRYST1 62.944 95.972 223.630 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004472 0.00000