HEADER TRANSPORT PROTEIN 21-DEC-07 3BRS TITLE CRYSTAL STRUCTURE OF SUGAR TRANSPORTER FROM CLOSTRIDIUM TITLE 2 PHYTOFERMENTANS CAVEAT 3BRS CHIRALITY ERRORS AT RESIDUE A 214 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN/LACI TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-309; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHYTOFERMENTANS; SOURCE 3 ORGANISM_TAXID: 357809; SOURCE 4 STRAIN: ISDG; SOURCE 5 GENE: CPHYDRAFT_2568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, SUGAR TRANSPORTER, KEYWDS 3 PSI-2, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,Y.PATSKOVSKY,R.TORO,A.J.MEYERS,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 3BRS 1 REMARK REVDAT 6 03-FEB-21 3BRS 1 AUTHOR JRNL SEQADV REVDAT 5 14-NOV-18 3BRS 1 AUTHOR REVDAT 4 25-OCT-17 3BRS 1 REMARK REVDAT 3 13-JUL-11 3BRS 1 VERSN REVDAT 2 24-FEB-09 3BRS 1 VERSN REVDAT 1 05-FEB-08 3BRS 0 JRNL AUTH V.N.MALASHKEVICH,Y.PATSKOVSKY,R.TORO,A.J.MEYERS,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF SUGAR TRANSPORTER FROM CLOSTRIDIUM JRNL TITL 2 PHYTOFERMENTANS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4263 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5737 ; 2.313 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 8.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;39.021 ;26.552 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 841 ;20.163 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.008 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3064 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2135 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2941 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 270 ; 0.231 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2798 ; 2.326 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4329 ; 6.485 ;20.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1704 ;13.773 ;20.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1407 ; 6.955 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2759 37.0030 19.2784 REMARK 3 T TENSOR REMARK 3 T11: -0.0593 T22: 0.0014 REMARK 3 T33: -0.0818 T12: 0.0217 REMARK 3 T13: 0.0045 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.4102 L22: 1.0487 REMARK 3 L33: 0.2986 L12: 0.1465 REMARK 3 L13: -0.0094 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.0458 S13: 0.0022 REMARK 3 S21: -0.0096 S22: 0.0315 S23: 0.0168 REMARK 3 S31: 0.0018 S32: 0.0019 S33: -0.0070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 25% PEG 3350, CRYOPROTECTED IN 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 294K, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 230 REMARK 465 GLN A 231 REMARK 465 TYR A 232 REMARK 465 LEU A 233 REMARK 465 GLU A 234 REMARK 465 ASN A 281 REMARK 465 GLU A 282 REMARK 465 GLY A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 229 REMARK 465 ILE B 230 REMARK 465 GLN B 231 REMARK 465 TYR B 232 REMARK 465 LEU B 233 REMARK 465 ASN B 281 REMARK 465 GLU B 282 REMARK 465 GLY B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 295 O HOH A 405 1.68 REMARK 500 O HOH B 461 O HOH B 513 1.79 REMARK 500 OE1 GLU B 239 O HOH B 539 2.02 REMARK 500 O HOH A 301 O HOH A 405 2.02 REMARK 500 O ILE A 38 O HOH A 303 2.07 REMARK 500 O HOH A 295 O HOH A 346 2.08 REMARK 500 O PRO B 66 O HOH B 538 2.09 REMARK 500 O PRO A 45 O HOH A 333 2.17 REMARK 500 OE2 GLU A 49 O HOH A 339 2.18 REMARK 500 OE1 GLN A 199 OG SER A 225 2.19 REMARK 500 OH TYR B 51 O HOH B 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 7 CZ TYR A 7 CE2 0.082 REMARK 500 GLU B 60 CB GLU B 60 CG 0.129 REMARK 500 GLU B 60 CG GLU B 60 CD 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 43 CG - SD - CE ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU A 261 CB - CG - CD1 ANGL. DEV. = 11.3 DEGREES REMARK 500 LEU A 261 CB - CG - CD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU B 261 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 15 77.46 -110.58 REMARK 500 ASP A 17 -2.65 78.68 REMARK 500 ASP A 97 -54.85 67.07 REMARK 500 PHE A 139 -98.11 -111.94 REMARK 500 SER A 158 -127.87 62.52 REMARK 500 ASP A 160 7.50 -59.04 REMARK 500 SER A 226 174.07 177.35 REMARK 500 GLU A 228 -78.07 -55.64 REMARK 500 ILE A 237 18.25 57.08 REMARK 500 LYS A 263 33.83 71.05 REMARK 500 TYR B 6 118.80 92.78 REMARK 500 LEU B 15 59.23 -116.83 REMARK 500 ASP B 17 -10.34 58.43 REMARK 500 PRO B 45 -176.83 -69.88 REMARK 500 ARG B 64 -6.71 -55.22 REMARK 500 LYS B 65 71.31 40.03 REMARK 500 ASP B 97 -51.62 63.25 REMARK 500 PHE B 139 -101.14 -113.61 REMARK 500 SER B 158 -130.52 50.10 REMARK 500 ALA B 166 147.87 -170.19 REMARK 500 SER B 226 165.17 175.77 REMARK 500 MET B 227 102.23 -58.69 REMARK 500 GLU B 235 -39.14 -137.44 REMARK 500 ILE B 237 101.54 2.18 REMARK 500 LYS B 262 20.24 -77.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 17 SER A 18 143.13 REMARK 500 GLY A 236 ILE A 237 -147.30 REMARK 500 ILE A 237 PHE A 238 143.53 REMARK 500 ASP B 159 ASP B 160 148.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11009M RELATED DB: TARGETDB DBREF 3BRS A 4 281 UNP Q1FMG2 Q1FMG2_9CLOT 32 309 DBREF 3BRS B 4 281 UNP Q1FMG2 Q1FMG2_9CLOT 32 309 SEQADV 3BRS MET A 1 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS SER A 2 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS LEU A 3 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS GLU A 282 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS GLY A 283 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS A 284 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS A 285 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS A 286 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS A 287 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS A 288 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS A 289 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS MET B 1 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS SER B 2 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS LEU B 3 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS GLU B 282 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS GLY B 283 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS B 284 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS B 285 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS B 286 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS B 287 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS B 288 UNP Q1FMG2 EXPRESSION TAG SEQADV 3BRS HIS B 289 UNP Q1FMG2 EXPRESSION TAG SEQRES 1 A 289 MET SER LEU LYS GLN TYR TYR MET ILE CYS ILE PRO LYS SEQRES 2 A 289 VAL LEU ASP ASP SER SER ASP PHE TRP SER VAL LEU VAL SEQRES 3 A 289 GLU GLY ALA GLN MET ALA ALA LYS GLU TYR GLU ILE LYS SEQRES 4 A 289 LEU GLU PHE MET ALA PRO GLU LYS GLU GLU ASP TYR LEU SEQRES 5 A 289 VAL GLN ASN GLU LEU ILE GLU GLU ALA ILE LYS ARG LYS SEQRES 6 A 289 PRO ASP VAL ILE LEU LEU ALA ALA ALA ASP TYR GLU LYS SEQRES 7 A 289 THR TYR ASP ALA ALA LYS GLU ILE LYS ASP ALA GLY ILE SEQRES 8 A 289 LYS LEU ILE VAL ILE ASP SER GLY MET LYS GLN ASP ILE SEQRES 9 A 289 ALA ASP ILE THR VAL ALA THR ASP ASN ILE GLN ALA GLY SEQRES 10 A 289 ILE ARG ILE GLY ALA VAL THR LYS ASN LEU VAL ARG LYS SEQRES 11 A 289 SER GLY LYS ILE GLY VAL ILE SER PHE VAL LYS ASN SER SEQRES 12 A 289 LYS THR ALA MET ASP ARG GLU GLU GLY LEU LYS ILE GLY SEQRES 13 A 289 LEU SER ASP ASP SER ASN LYS ILE GLU ALA ILE TYR TYR SEQRES 14 A 289 CYS ASP SER ASN TYR ASP LYS ALA TYR ASP GLY THR VAL SEQRES 15 A 289 GLU LEU LEU THR LYS TYR PRO ASP ILE SER VAL MET VAL SEQRES 16 A 289 GLY LEU ASN GLN TYR SER ALA THR GLY ALA ALA ARG ALA SEQRES 17 A 289 ILE LYS ASP MET SER LEU GLU ALA LYS VAL LYS LEU VAL SEQRES 18 A 289 CYS ILE ASP SER SER MET GLU GLN ILE GLN TYR LEU GLU SEQRES 19 A 289 GLU GLY ILE PHE GLU ALA MET VAL VAL GLN LYS PRO PHE SEQRES 20 A 289 ASN ILE GLY TYR LEU GLY VAL GLU LYS ALA LEU LYS LEU SEQRES 21 A 289 LEU LYS LYS GLU TYR VAL PRO LYS GLN LEU ASP SER GLY SEQRES 22 A 289 CYS ALA LEU ILE THR LYS ASP ASN GLU GLY HIS HIS HIS SEQRES 23 A 289 HIS HIS HIS SEQRES 1 B 289 MET SER LEU LYS GLN TYR TYR MET ILE CYS ILE PRO LYS SEQRES 2 B 289 VAL LEU ASP ASP SER SER ASP PHE TRP SER VAL LEU VAL SEQRES 3 B 289 GLU GLY ALA GLN MET ALA ALA LYS GLU TYR GLU ILE LYS SEQRES 4 B 289 LEU GLU PHE MET ALA PRO GLU LYS GLU GLU ASP TYR LEU SEQRES 5 B 289 VAL GLN ASN GLU LEU ILE GLU GLU ALA ILE LYS ARG LYS SEQRES 6 B 289 PRO ASP VAL ILE LEU LEU ALA ALA ALA ASP TYR GLU LYS SEQRES 7 B 289 THR TYR ASP ALA ALA LYS GLU ILE LYS ASP ALA GLY ILE SEQRES 8 B 289 LYS LEU ILE VAL ILE ASP SER GLY MET LYS GLN ASP ILE SEQRES 9 B 289 ALA ASP ILE THR VAL ALA THR ASP ASN ILE GLN ALA GLY SEQRES 10 B 289 ILE ARG ILE GLY ALA VAL THR LYS ASN LEU VAL ARG LYS SEQRES 11 B 289 SER GLY LYS ILE GLY VAL ILE SER PHE VAL LYS ASN SER SEQRES 12 B 289 LYS THR ALA MET ASP ARG GLU GLU GLY LEU LYS ILE GLY SEQRES 13 B 289 LEU SER ASP ASP SER ASN LYS ILE GLU ALA ILE TYR TYR SEQRES 14 B 289 CYS ASP SER ASN TYR ASP LYS ALA TYR ASP GLY THR VAL SEQRES 15 B 289 GLU LEU LEU THR LYS TYR PRO ASP ILE SER VAL MET VAL SEQRES 16 B 289 GLY LEU ASN GLN TYR SER ALA THR GLY ALA ALA ARG ALA SEQRES 17 B 289 ILE LYS ASP MET SER LEU GLU ALA LYS VAL LYS LEU VAL SEQRES 18 B 289 CYS ILE ASP SER SER MET GLU GLN ILE GLN TYR LEU GLU SEQRES 19 B 289 GLU GLY ILE PHE GLU ALA MET VAL VAL GLN LYS PRO PHE SEQRES 20 B 289 ASN ILE GLY TYR LEU GLY VAL GLU LYS ALA LEU LYS LEU SEQRES 21 B 289 LEU LYS LYS GLU TYR VAL PRO LYS GLN LEU ASP SER GLY SEQRES 22 B 289 CYS ALA LEU ILE THR LYS ASP ASN GLU GLY HIS HIS HIS SEQRES 23 B 289 HIS HIS HIS FORMUL 3 HOH *265(H2 O) HELIX 1 1 SER A 19 GLU A 37 1 19 HELIX 2 2 ASP A 50 ARG A 64 1 15 HELIX 3 3 THR A 79 LYS A 84 1 6 HELIX 4 4 GLU A 85 GLY A 90 5 6 HELIX 5 5 ASP A 112 VAL A 128 1 17 HELIX 6 6 SER A 143 SER A 158 1 16 HELIX 7 7 ASP A 159 ASN A 162 5 4 HELIX 8 8 ASN A 173 TYR A 188 1 16 HELIX 9 9 ASN A 198 MET A 212 1 15 HELIX 10 10 LYS A 245 LYS A 263 1 19 HELIX 11 11 SER B 19 GLU B 37 1 19 HELIX 12 12 ASP B 50 ARG B 64 1 15 HELIX 13 13 THR B 79 LYS B 84 1 6 HELIX 14 14 GLU B 85 GLY B 90 5 6 HELIX 15 15 ASP B 112 VAL B 128 1 17 HELIX 16 16 SER B 143 SER B 158 1 16 HELIX 17 17 ASP B 159 ASN B 162 5 4 HELIX 18 18 ASN B 173 TYR B 188 1 16 HELIX 19 19 ASN B 198 MET B 212 1 15 HELIX 20 20 LYS B 245 LYS B 262 1 18 SHEET 1 A 6 LYS A 39 PHE A 42 0 SHEET 2 A 6 TYR A 7 ILE A 11 1 N CYS A 10 O GLU A 41 SHEET 3 A 6 VAL A 68 LEU A 71 1 O LEU A 70 N ILE A 11 SHEET 4 A 6 LYS A 92 ILE A 96 1 O LYS A 92 N ILE A 69 SHEET 5 A 6 ILE A 107 ALA A 110 1 O ILE A 107 N VAL A 95 SHEET 6 A 6 GLN A 269 ASP A 271 1 O LEU A 270 N THR A 108 SHEET 1 B 6 ILE A 164 TYR A 169 0 SHEET 2 B 6 LYS A 133 SER A 138 1 N VAL A 136 O TYR A 168 SHEET 3 B 6 ILE A 191 GLY A 196 1 O VAL A 195 N ILE A 137 SHEET 4 B 6 LYS A 219 ASP A 224 1 O LYS A 219 N MET A 194 SHEET 5 B 6 ALA A 240 VAL A 243 1 O VAL A 242 N ASP A 224 SHEET 6 B 6 ALA A 275 THR A 278 -1 O ILE A 277 N MET A 241 SHEET 1 C 6 LYS B 39 PHE B 42 0 SHEET 2 C 6 TYR B 7 ILE B 11 1 N CYS B 10 O GLU B 41 SHEET 3 C 6 VAL B 68 LEU B 71 1 O LEU B 70 N ILE B 11 SHEET 4 C 6 LYS B 92 ILE B 96 1 O ILE B 94 N LEU B 71 SHEET 5 C 6 ILE B 107 ALA B 110 1 O VAL B 109 N VAL B 95 SHEET 6 C 6 GLN B 269 ASP B 271 1 O LEU B 270 N THR B 108 SHEET 1 D 6 ILE B 164 TYR B 169 0 SHEET 2 D 6 LYS B 133 SER B 138 1 N VAL B 136 O TYR B 168 SHEET 3 D 6 ILE B 191 GLY B 196 1 O VAL B 195 N ILE B 137 SHEET 4 D 6 LYS B 219 ASP B 224 1 O LYS B 219 N MET B 194 SHEET 5 D 6 ALA B 240 GLN B 244 1 O VAL B 242 N ASP B 224 SHEET 6 D 6 CYS B 274 THR B 278 -1 O ILE B 277 N MET B 241 CRYST1 68.620 54.700 90.240 90.00 111.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014573 0.000000 0.005823 0.00000 SCALE2 0.000000 0.018282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011933 0.00000