HEADER RNA BINDING PROTEIN/RNA 23-DEC-07 3BSB TITLE CRYSTAL STRUCTURE OF HUMAN PUMILIO1 IN COMPLEX WITH CYCLINB REVERSE TITLE 2 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*UP*UP*AP*AP*UP*GP*UP*U)-3'; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUMILIO HOMOLOG 1; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: PUMILIO-PUF DOMAIN; COMPND 9 SYNONYM: PUMILIO-1, HSPUM; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: PUM1, KIAA0099, PUMH1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS PROTEIN-RNA COMPLEX, ALTERNATIVE SPLICING, CYTOPLASM, PHOSPHOPROTEIN, KEYWDS 2 RNA-BINDING, TRANSLATION REGULATION, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.K.GUPTA,D.T.NAIR,R.P.WHARTON,A.K.AGGARWAL REVDAT 4 01-NOV-23 3BSB 1 REMARK REVDAT 3 25-OCT-17 3BSB 1 REMARK REVDAT 2 24-FEB-09 3BSB 1 VERSN REVDAT 1 08-APR-08 3BSB 0 JRNL AUTH Y.K.GUPTA,D.T.NAIR,R.P.WHARTON,A.K.AGGARWAL JRNL TITL STRUCTURES OF HUMAN PUMILIO WITH NONCOGNATE RNAS REVEAL JRNL TITL 2 MOLECULAR MECHANISMS FOR BINDING PROMISCUITY. JRNL REF STRUCTURE V. 16 549 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18328718 JRNL DOI 10.1016/J.STR.2008.01.006 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 59076.830 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 17996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2352 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3262 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 296 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5491 REMARK 3 NUCLEIC ACID ATOMS : 184 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.32000 REMARK 3 B22 (A**2) : 18.28000 REMARK 3 B33 (A**2) : -12.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.53 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.630 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 18.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-06; 08-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 17-ID; 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 0.918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SI(111) REMARK 200 DOUBLE-CRYSTAL SYSTEM; NULL REMARK 200 OPTICS : MIRROR; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 4.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP, PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.93700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.14600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 160.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.93700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.14600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 828 REMARK 465 MET A 1169 REMARK 465 LYS A 1170 REMARK 465 MET B 1169 REMARK 465 LYS B 1170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 831 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 834 CG CD OE1 OE2 REMARK 470 ARG A 840 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 872 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1130 CG OD1 OD2 REMARK 470 LYS A1158 CG CD CE NZ REMARK 470 ARG B 829 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 831 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 837 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1138 CG CD CE NZ REMARK 470 LYS B1158 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 1106 O GLY B 1107 1.40 REMARK 500 NE ARG A 829 NH1 ARG A 837 1.86 REMARK 500 CG LYS A 1138 O HOH A 166 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U C 3 O3' U C 3 C3' 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U C 2 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 U C 2 O4' - C4' - C3' ANGL. DEV. = -10.3 DEGREES REMARK 500 U C 3 OP1 - P - OP2 ANGL. DEV. = -10.1 DEGREES REMARK 500 U C 3 C3' - O3' - P ANGL. DEV. = 12.7 DEGREES REMARK 500 A C 4 OP1 - P - OP2 ANGL. DEV. = -10.7 DEGREES REMARK 500 A C 4 N9 - C1' - C2' ANGL. DEV. = -10.0 DEGREES REMARK 500 A C 4 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 A C 5 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 A C 5 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 U C 6 O4' - C4' - C3' ANGL. DEV. = -8.3 DEGREES REMARK 500 U C 6 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 G C 7 O3' - P - O5' ANGL. DEV. = -11.6 DEGREES REMARK 500 G C 7 N9 - C1' - C2' ANGL. DEV. = -11.0 DEGREES REMARK 500 U C 8 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 U C 8 N1 - C1' - C2' ANGL. DEV. = -15.2 DEGREES REMARK 500 U C 9 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 PRO B1108 CA - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 HIS B1109 CA - CB - CG ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO B1134 CA - N - CD ANGL. DEV. = -9.5 DEGREES REMARK 500 TYR B1167 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 839 95.03 54.31 REMARK 500 ARG A 840 -7.72 -143.63 REMARK 500 ALA A 888 47.37 -109.47 REMARK 500 GLU A 907 -63.83 -99.47 REMARK 500 ARG A 922 157.36 -28.90 REMARK 500 PRO A 946 158.06 -49.69 REMARK 500 ASP A1106 41.85 -109.27 REMARK 500 PRO A1134 -55.69 -9.44 REMARK 500 ARG A1137 -59.13 -28.71 REMARK 500 ARG A1145 -39.27 -34.99 REMARK 500 TYR A1156 41.36 -88.36 REMARK 500 ARG B 829 -179.89 -59.23 REMARK 500 ARG B 840 20.40 -77.29 REMARK 500 TYR B 841 80.22 -159.14 REMARK 500 ALA B 888 32.27 -94.20 REMARK 500 THR B1033 -31.95 -38.51 REMARK 500 ALA B1089 176.51 -59.49 REMARK 500 ARG B1091 -81.30 -25.18 REMARK 500 PRO B1134 -73.68 10.77 REMARK 500 TYR B1156 15.46 -69.73 REMARK 500 LYS B1158 28.44 -74.74 REMARK 500 ILE B1160 -73.83 -70.35 REMARK 500 LEU B1161 -59.79 -25.74 REMARK 500 LYS B1166 2.09 -41.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U C 1 0.07 SIDE CHAIN REMARK 500 A C 4 0.12 SIDE CHAIN REMARK 500 U C 6 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M8Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE2-10 RNA REMARK 900 RELATED ID: 1M8X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE1-14 RNA REMARK 900 RELATED ID: 1M8W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE1-19 RNA REMARK 900 RELATED ID: 3BSX RELATED DB: PDB DBREF 3BSB A 828 1170 UNP Q14671 PUM1_HUMAN 828 1170 DBREF 3BSB B 828 1170 UNP Q14671 PUM1_HUMAN 828 1170 DBREF 3BSB C 1 9 PDB 3BSB 3BSB 1 9 SEQRES 1 C 9 U U U A A U G U U SEQRES 1 A 343 GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN ARG SEQRES 2 A 343 TYR PRO ASN LEU GLN LEU ARG GLU ILE ALA GLY HIS ILE SEQRES 3 A 343 MET GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE ILE SEQRES 4 A 343 GLN LEU LYS LEU GLU ARG ALA THR PRO ALA GLU ARG GLN SEQRES 5 A 343 LEU VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN LEU SEQRES 6 A 343 MET VAL ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS PHE SEQRES 7 A 343 PHE GLU PHE GLY SER LEU GLU GLN LYS LEU ALA LEU ALA SEQRES 8 A 343 GLU ARG ILE ARG GLY HIS VAL LEU SER LEU ALA LEU GLN SEQRES 9 A 343 MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU PHE SEQRES 10 A 343 ILE PRO SER ASP GLN GLN ASN GLU MET VAL ARG GLU LEU SEQRES 11 A 343 ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN GLY SEQRES 12 A 343 ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL GLN PRO SEQRES 13 A 343 GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS GLY GLN SEQRES 14 A 343 VAL PHE ALA LEU SER THR HIS PRO TYR GLY CYS ARG VAL SEQRES 15 A 343 ILE GLN ARG ILE LEU GLU HIS CYS LEU PRO ASP GLN THR SEQRES 16 A 343 LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR GLU GLN SEQRES 17 A 343 LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE GLN HIS SEQRES 18 A 343 VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER LYS ILE SEQRES 19 A 343 VAL ALA GLU ILE ARG GLY ASN VAL LEU VAL LEU SER GLN SEQRES 20 A 343 HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL THR SEQRES 21 A 343 HIS ALA SER ARG THR GLU ARG ALA VAL LEU ILE ASP GLU SEQRES 22 A 343 VAL CYS THR MET ASN ASP GLY PRO HIS SER ALA LEU TYR SEQRES 23 A 343 THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN SEQRES 24 A 343 LYS MET ILE ASP VAL ALA GLU PRO GLY GLN ARG LYS ILE SEQRES 25 A 343 VAL MET HIS LYS ILE ARG PRO HIS ILE ALA THR LEU ARG SEQRES 26 A 343 LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS LEU GLU SEQRES 27 A 343 LYS TYR TYR MET LYS SEQRES 1 B 343 GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN ARG SEQRES 2 B 343 TYR PRO ASN LEU GLN LEU ARG GLU ILE ALA GLY HIS ILE SEQRES 3 B 343 MET GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE ILE SEQRES 4 B 343 GLN LEU LYS LEU GLU ARG ALA THR PRO ALA GLU ARG GLN SEQRES 5 B 343 LEU VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN LEU SEQRES 6 B 343 MET VAL ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS PHE SEQRES 7 B 343 PHE GLU PHE GLY SER LEU GLU GLN LYS LEU ALA LEU ALA SEQRES 8 B 343 GLU ARG ILE ARG GLY HIS VAL LEU SER LEU ALA LEU GLN SEQRES 9 B 343 MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU PHE SEQRES 10 B 343 ILE PRO SER ASP GLN GLN ASN GLU MET VAL ARG GLU LEU SEQRES 11 B 343 ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN GLY SEQRES 12 B 343 ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL GLN PRO SEQRES 13 B 343 GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS GLY GLN SEQRES 14 B 343 VAL PHE ALA LEU SER THR HIS PRO TYR GLY CYS ARG VAL SEQRES 15 B 343 ILE GLN ARG ILE LEU GLU HIS CYS LEU PRO ASP GLN THR SEQRES 16 B 343 LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR GLU GLN SEQRES 17 B 343 LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE GLN HIS SEQRES 18 B 343 VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER LYS ILE SEQRES 19 B 343 VAL ALA GLU ILE ARG GLY ASN VAL LEU VAL LEU SER GLN SEQRES 20 B 343 HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL THR SEQRES 21 B 343 HIS ALA SER ARG THR GLU ARG ALA VAL LEU ILE ASP GLU SEQRES 22 B 343 VAL CYS THR MET ASN ASP GLY PRO HIS SER ALA LEU TYR SEQRES 23 B 343 THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN SEQRES 24 B 343 LYS MET ILE ASP VAL ALA GLU PRO GLY GLN ARG LYS ILE SEQRES 25 B 343 VAL MET HIS LYS ILE ARG PRO HIS ILE ALA THR LEU ARG SEQRES 26 B 343 LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS LEU GLU SEQRES 27 B 343 LYS TYR TYR MET LYS FORMUL 4 HOH *145(H2 O) HELIX 1 1 SER A 830 ARG A 837 1 8 HELIX 2 2 LEU A 846 ALA A 850 5 5 HELIX 3 3 HIS A 852 ASP A 859 1 8 HELIX 4 4 HIS A 861 ARG A 872 1 12 HELIX 5 5 THR A 874 GLN A 887 1 14 HELIX 6 6 ALA A 888 VAL A 894 1 7 HELIX 7 7 GLY A 898 PHE A 908 1 11 HELIX 8 8 SER A 910 ARG A 922 1 13 HELIX 9 9 HIS A 924 LEU A 930 1 7 HELIX 10 10 TYR A 933 ILE A 945 1 13 HELIX 11 11 PRO A 946 ARG A 955 1 10 HELIX 12 12 GLU A 956 ASP A 958 5 3 HELIX 13 13 HIS A 960 LYS A 966 1 7 HELIX 14 14 ASN A 969 VAL A 981 1 13 HELIX 15 15 GLN A 982 SER A 985 5 4 HELIX 16 16 LEU A 986 PHE A 993 1 8 HELIX 17 17 GLN A 996 THR A 1002 1 7 HELIX 18 18 TYR A 1005 CYS A 1017 1 13 HELIX 19 19 LEU A 1018 HIS A 1032 1 15 HELIX 20 20 HIS A 1032 VAL A 1037 1 6 HELIX 21 21 TYR A 1041 GLY A 1053 1 13 HELIX 22 22 ARG A 1054 ARG A 1066 1 13 HELIX 23 23 ASN A 1068 SER A 1073 1 6 HELIX 24 24 PHE A 1077 ALA A 1089 1 13 HELIX 25 25 SER A 1090 MET A 1104 1 15 HELIX 26 26 ALA A 1111 LYS A 1117 1 7 HELIX 27 27 TYR A 1120 ALA A 1132 1 13 HELIX 28 28 GLU A 1133 ARG A 1145 1 13 HELIX 29 29 HIS A 1147 LYS A 1153 1 7 HELIX 30 30 GLY A 1157 TYR A 1168 1 12 HELIX 31 31 SER B 830 ASN B 838 1 9 HELIX 32 32 LEU B 846 ALA B 850 5 5 HELIX 33 33 HIS B 852 GLN B 858 1 7 HELIX 34 34 ASP B 859 ARG B 872 1 14 HELIX 35 35 THR B 874 GLN B 887 1 14 HELIX 36 36 ALA B 888 VAL B 894 1 7 HELIX 37 37 PHE B 897 GLY B 909 1 13 HELIX 38 38 SER B 910 ARG B 922 1 13 HELIX 39 39 HIS B 924 LEU B 930 1 7 HELIX 40 40 TYR B 933 ILE B 945 1 13 HELIX 41 41 PRO B 946 GLU B 956 1 11 HELIX 42 42 HIS B 960 LYS B 966 1 7 HELIX 43 43 ASN B 969 VAL B 981 1 13 HELIX 44 44 GLN B 982 SER B 985 5 4 HELIX 45 45 LEU B 986 PHE B 993 1 8 HELIX 46 46 GLN B 996 THR B 1002 1 7 HELIX 47 47 HIS B 1003 CYS B 1017 1 15 HELIX 48 48 LEU B 1018 VAL B 1037 1 20 HELIX 49 49 TYR B 1041 GLY B 1053 1 13 HELIX 50 50 ARG B 1054 ARG B 1066 1 13 HELIX 51 51 ASN B 1068 SER B 1073 1 6 HELIX 52 52 ALA B 1078 ALA B 1089 1 12 HELIX 53 53 SER B 1090 THR B 1103 1 14 HELIX 54 54 SER B 1110 LYS B 1117 1 8 HELIX 55 55 ALA B 1121 ALA B 1132 1 12 HELIX 56 56 PRO B 1134 ARG B 1145 1 12 HELIX 57 57 HIS B 1147 LYS B 1153 1 7 HELIX 58 58 TYR B 1154 LYS B 1158 5 5 HELIX 59 59 HIS B 1159 LYS B 1166 1 8 SHEET 1 A 2 ASN A1105 ASP A1106 0 SHEET 2 A 2 HIS A1109 SER A1110 -1 O HIS A1109 N ASP A1106 CRYST1 35.874 64.292 321.230 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003113 0.00000