HEADER RNA BINDING PROTEIN/RNA 26-DEC-07 3BSX TITLE CRYSTAL STRUCTURE OF HUMAN PUMILIO 1 IN COMPLEX WITH PUF5 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*UP*GP*UP*AP*AP*UP*AP*UP*UP*A)-3'; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUMILIO HOMOLOG 1; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: PUMILIO-PUF DOMAIN; COMPND 9 SYNONYM: PUMILIO-1, HSPUM; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: PUM1, KIAA0099, PUMH1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL-21 GOLD; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS PROTEIN-RNA COMPLEX, PHOSPHOPROTEIN, RNA-BINDING, TRANSLATION KEYWDS 2 REGULATION, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.K.GUPTA,D.T.NAIR,R.P.WHARTON,A.K.AGGARWAL REVDAT 4 01-NOV-23 3BSX 1 REMARK REVDAT 3 13-JUL-11 3BSX 1 VERSN REVDAT 2 24-FEB-09 3BSX 1 VERSN REVDAT 1 08-APR-08 3BSX 0 JRNL AUTH Y.K.GUPTA,D.T.NAIR,R.P.WHARTON,A.K.AGGARWAL JRNL TITL STRUCTURES OF HUMAN PUMILIO WITH NONCOGNATE RNAS REVEAL JRNL TITL 2 MOLECULAR MECHANISMS FOR BINDING PROMISCUITY. JRNL REF STRUCTURE V. 16 549 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18328718 JRNL DOI 10.1016/J.STR.2008.01.006 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 28112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1809 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5471 REMARK 3 NUCLEIC ACID ATOMS : 392 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 2.81000 REMARK 3 B33 (A**2) : -2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.672 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6016 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8212 ; 1.568 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 4.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;43.159 ;24.362 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1010 ;17.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;23.556 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4419 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3158 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4111 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 314 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.361 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3510 ; 1.301 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5480 ; 1.567 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2893 ; 3.056 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2732 ; 4.077 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 828 A 1168 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5273 -4.0136 11.0076 REMARK 3 T TENSOR REMARK 3 T11: -0.0065 T22: -0.0310 REMARK 3 T33: -0.0028 T12: -0.0150 REMARK 3 T13: 0.0028 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.0997 L22: 0.0910 REMARK 3 L33: 1.8646 L12: -0.0861 REMARK 3 L13: 0.1475 L23: -0.2932 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0341 S13: 0.0536 REMARK 3 S21: -0.0427 S22: -0.0452 S23: 0.0324 REMARK 3 S31: 0.0735 S32: 0.0666 S33: 0.0551 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 828 B 1167 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6489 20.9035 66.0852 REMARK 3 T TENSOR REMARK 3 T11: -0.0111 T22: 0.0680 REMARK 3 T33: -0.0278 T12: -0.0512 REMARK 3 T13: 0.0935 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.0001 L22: 0.0297 REMARK 3 L33: 3.3974 L12: 0.0019 REMARK 3 L13: 0.0200 L23: 0.3175 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0667 S13: 0.0257 REMARK 3 S21: -0.0398 S22: -0.0317 S23: -0.0042 REMARK 3 S31: -0.0634 S32: -0.0534 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2856 -11.5031 6.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: -0.0028 REMARK 3 T33: -0.0342 T12: -0.0027 REMARK 3 T13: 0.0302 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.2586 L22: 0.3231 REMARK 3 L33: 7.6530 L12: 0.7813 REMARK 3 L13: 4.9631 L23: 1.3028 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.4270 S13: 0.0315 REMARK 3 S21: -0.1371 S22: 0.0484 S23: 0.1834 REMARK 3 S31: 0.3851 S32: -0.7868 S33: -0.1347 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3968 12.3462 65.1262 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0001 REMARK 3 T33: -0.0003 T12: 0.0008 REMARK 3 T13: 0.0008 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 6.1854 L22: 2.4365 REMARK 3 L33: 35.7239 L12: 2.7133 REMARK 3 L13: 3.8524 L23: 8.1344 REMARK 3 S TENSOR REMARK 3 S11: 0.2673 S12: -0.9779 S13: 0.1458 REMARK 3 S21: -0.1281 S22: -0.0994 S23: -0.0929 REMARK 3 S31: 1.9927 S32: -0.3695 S33: -0.1678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16400 REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1M8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, 0.05M SODIUM CACODYLATE PH REMARK 280 6.5, 0.2M KCL, 0.1M MAGNESIUM ACETATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.91750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.98750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.82100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 156.98750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.91750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.82100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A C 11 REMARK 465 U D 1 REMARK 465 A D 11 REMARK 465 MET A 1169 REMARK 465 LYS A 1170 REMARK 465 TYR B 1168 REMARK 465 MET B 1169 REMARK 465 LYS B 1170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U D 2 P OP1 OP2 REMARK 470 ARG A 831 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 840 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 864 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1034 CG CD OE1 OE2 REMARK 470 LYS A1153 CG CD CE NZ REMARK 470 ARG B 831 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 834 CG CD OE1 OE2 REMARK 470 ARG B 840 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 922 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1027 CG CD OE1 OE2 REMARK 470 ASP B1106 CG OD1 OD2 REMARK 470 LYS B1158 CG CD CE NZ REMARK 470 GLU B1165 CG CD OE1 OE2 REMARK 470 LYS B1166 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U D 10 O4' U D 10 C1' 0.080 REMARK 500 U D 10 N1 U D 10 C6 0.061 REMARK 500 U D 10 N3 U D 10 C4 0.057 REMARK 500 CYS A1017 CB CYS A1017 SG 0.128 REMARK 500 GLY B 828 N GLY B 828 CA 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U C 1 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 A C 6 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 U C 9 O5' - C5' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 G D 3 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 A D 5 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 U D 7 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 U D 7 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 U D 9 C1' - O4' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 U D 9 C4' - C3' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 U D 9 O4' - C1' - N1 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 829 -177.95 -69.68 REMARK 500 ASN A 839 37.94 15.60 REMARK 500 TYR A 841 81.87 -151.90 REMARK 500 ALA A 888 50.32 -92.55 REMARK 500 ARG B 829 116.70 91.83 REMARK 500 ARG B 831 40.93 -80.38 REMARK 500 LEU B 832 -43.50 -137.80 REMARK 500 ASN B 839 112.82 82.62 REMARK 500 ARG B 840 -14.12 -172.28 REMARK 500 TYR B 841 76.95 -118.62 REMARK 500 ALA B 888 46.29 -86.25 REMARK 500 ARG B 922 129.20 -37.90 REMARK 500 HIS B 960 22.46 -141.72 REMARK 500 GLN B 987 -38.21 -36.11 REMARK 500 ASP B1106 47.57 -58.95 REMARK 500 PRO B1134 -51.07 -24.22 REMARK 500 PRO B1146 1.79 -67.88 REMARK 500 LYS B1166 -120.54 -56.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BSB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PUMILIO 1 IN COMPLEX WITH CYCLINB REMARK 900 REVERSE RNA. REMARK 900 RELATED ID: 1M8X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE1-14 RNA REMARK 900 RELATED ID: 1M8W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE1-19 RNA REMARK 900 RELATED ID: 1M8Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE2-10 RNA DBREF 3BSX A 828 1170 UNP Q14671 PUM1_HUMAN 828 1170 DBREF 3BSX B 828 1170 UNP Q14671 PUM1_HUMAN 828 1170 DBREF 3BSX C 1 11 PDB 3BSX 3BSX 1 11 DBREF 3BSX D 1 11 PDB 3BSX 3BSX 1 11 SEQRES 1 C 11 U U G U A A U A U U A SEQRES 1 D 11 U U G U A A U A U U A SEQRES 1 A 343 GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN ARG SEQRES 2 A 343 TYR PRO ASN LEU GLN LEU ARG GLU ILE ALA GLY HIS ILE SEQRES 3 A 343 MET GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE ILE SEQRES 4 A 343 GLN LEU LYS LEU GLU ARG ALA THR PRO ALA GLU ARG GLN SEQRES 5 A 343 LEU VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN LEU SEQRES 6 A 343 MET VAL ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS PHE SEQRES 7 A 343 PHE GLU PHE GLY SER LEU GLU GLN LYS LEU ALA LEU ALA SEQRES 8 A 343 GLU ARG ILE ARG GLY HIS VAL LEU SER LEU ALA LEU GLN SEQRES 9 A 343 MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU PHE SEQRES 10 A 343 ILE PRO SER ASP GLN GLN ASN GLU MET VAL ARG GLU LEU SEQRES 11 A 343 ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN GLY SEQRES 12 A 343 ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL GLN PRO SEQRES 13 A 343 GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS GLY GLN SEQRES 14 A 343 VAL PHE ALA LEU SER THR HIS PRO TYR GLY CYS ARG VAL SEQRES 15 A 343 ILE GLN ARG ILE LEU GLU HIS CYS LEU PRO ASP GLN THR SEQRES 16 A 343 LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR GLU GLN SEQRES 17 A 343 LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE GLN HIS SEQRES 18 A 343 VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER LYS ILE SEQRES 19 A 343 VAL ALA GLU ILE ARG GLY ASN VAL LEU VAL LEU SER GLN SEQRES 20 A 343 HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL THR SEQRES 21 A 343 HIS ALA SER ARG THR GLU ARG ALA VAL LEU ILE ASP GLU SEQRES 22 A 343 VAL CYS THR MET ASN ASP GLY PRO HIS SER ALA LEU TYR SEQRES 23 A 343 THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN SEQRES 24 A 343 LYS MET ILE ASP VAL ALA GLU PRO GLY GLN ARG LYS ILE SEQRES 25 A 343 VAL MET HIS LYS ILE ARG PRO HIS ILE ALA THR LEU ARG SEQRES 26 A 343 LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS LEU GLU SEQRES 27 A 343 LYS TYR TYR MET LYS SEQRES 1 B 343 GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN ARG SEQRES 2 B 343 TYR PRO ASN LEU GLN LEU ARG GLU ILE ALA GLY HIS ILE SEQRES 3 B 343 MET GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE ILE SEQRES 4 B 343 GLN LEU LYS LEU GLU ARG ALA THR PRO ALA GLU ARG GLN SEQRES 5 B 343 LEU VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN LEU SEQRES 6 B 343 MET VAL ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS PHE SEQRES 7 B 343 PHE GLU PHE GLY SER LEU GLU GLN LYS LEU ALA LEU ALA SEQRES 8 B 343 GLU ARG ILE ARG GLY HIS VAL LEU SER LEU ALA LEU GLN SEQRES 9 B 343 MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU PHE SEQRES 10 B 343 ILE PRO SER ASP GLN GLN ASN GLU MET VAL ARG GLU LEU SEQRES 11 B 343 ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN GLY SEQRES 12 B 343 ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL GLN PRO SEQRES 13 B 343 GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS GLY GLN SEQRES 14 B 343 VAL PHE ALA LEU SER THR HIS PRO TYR GLY CYS ARG VAL SEQRES 15 B 343 ILE GLN ARG ILE LEU GLU HIS CYS LEU PRO ASP GLN THR SEQRES 16 B 343 LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR GLU GLN SEQRES 17 B 343 LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE GLN HIS SEQRES 18 B 343 VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER LYS ILE SEQRES 19 B 343 VAL ALA GLU ILE ARG GLY ASN VAL LEU VAL LEU SER GLN SEQRES 20 B 343 HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL THR SEQRES 21 B 343 HIS ALA SER ARG THR GLU ARG ALA VAL LEU ILE ASP GLU SEQRES 22 B 343 VAL CYS THR MET ASN ASP GLY PRO HIS SER ALA LEU TYR SEQRES 23 B 343 THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN SEQRES 24 B 343 LYS MET ILE ASP VAL ALA GLU PRO GLY GLN ARG LYS ILE SEQRES 25 B 343 VAL MET HIS LYS ILE ARG PRO HIS ILE ALA THR LEU ARG SEQRES 26 B 343 LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS LEU GLU SEQRES 27 B 343 LYS TYR TYR MET LYS FORMUL 5 HOH *246(H2 O) HELIX 1 1 SER A 830 ASN A 838 1 9 HELIX 2 2 GLN A 845 ALA A 850 5 6 HELIX 3 3 HIS A 852 GLN A 858 1 7 HELIX 4 4 ASP A 859 ARG A 872 1 14 HELIX 5 5 THR A 874 ALA A 888 1 15 HELIX 6 6 ALA A 888 VAL A 894 1 7 HELIX 7 7 GLY A 898 GLY A 909 1 12 HELIX 8 8 SER A 910 ARG A 922 1 13 HELIX 9 9 HIS A 924 LEU A 930 1 7 HELIX 10 10 TYR A 933 ILE A 945 1 13 HELIX 11 11 PRO A 946 GLU A 956 1 11 HELIX 12 12 HIS A 960 ASP A 967 1 8 HELIX 13 13 ASN A 969 VAL A 981 1 13 HELIX 14 14 GLN A 982 SER A 985 5 4 HELIX 15 15 LEU A 986 LYS A 994 1 9 HELIX 16 16 GLN A 996 THR A 1002 1 7 HELIX 17 17 TYR A 1005 CYS A 1017 1 13 HELIX 18 18 LEU A 1018 HIS A 1032 1 15 HELIX 19 19 HIS A 1032 GLN A 1038 1 7 HELIX 20 20 TYR A 1041 GLY A 1053 1 13 HELIX 21 21 ARG A 1054 ARG A 1066 1 13 HELIX 22 22 ASN A 1068 GLN A 1074 1 7 HELIX 23 23 PHE A 1077 ALA A 1089 1 13 HELIX 24 24 SER A 1090 MET A 1104 1 15 HELIX 25 25 SER A 1110 LYS A 1117 1 8 HELIX 26 26 TYR A 1120 ALA A 1132 1 13 HELIX 27 27 GLU A 1133 ARG A 1145 1 13 HELIX 28 28 HIS A 1147 ARG A 1152 1 6 HELIX 29 29 TYR A 1156 TYR A 1168 1 13 HELIX 30 30 LEU B 832 ARG B 837 1 6 HELIX 31 31 LEU B 846 ALA B 850 5 5 HELIX 32 32 HIS B 852 GLN B 858 1 7 HELIX 33 33 ASP B 859 ALA B 873 1 15 HELIX 34 34 THR B 874 GLN B 887 1 14 HELIX 35 35 ALA B 888 VAL B 894 1 7 HELIX 36 36 PHE B 897 GLY B 909 1 13 HELIX 37 37 SER B 910 ARG B 922 1 13 HELIX 38 38 HIS B 924 LEU B 930 1 7 HELIX 39 39 TYR B 933 ILE B 945 1 13 HELIX 40 40 PRO B 946 ARG B 955 1 10 HELIX 41 41 GLU B 956 ASP B 958 5 3 HELIX 42 42 HIS B 960 LYS B 966 1 7 HELIX 43 43 ASN B 969 VAL B 981 1 13 HELIX 44 44 GLN B 982 SER B 985 5 4 HELIX 45 45 LEU B 986 PHE B 993 1 8 HELIX 46 46 GLN B 996 THR B 1002 1 7 HELIX 47 47 TYR B 1005 CYS B 1017 1 13 HELIX 48 48 LEU B 1018 VAL B 1037 1 20 HELIX 49 49 TYR B 1041 GLY B 1053 1 13 HELIX 50 50 ARG B 1054 ARG B 1066 1 13 HELIX 51 51 ASN B 1068 GLN B 1074 1 7 HELIX 52 52 PHE B 1077 ALA B 1089 1 13 HELIX 53 53 SER B 1090 MET B 1104 1 15 HELIX 54 54 SER B 1110 ASP B 1118 1 9 HELIX 55 55 TYR B 1120 ALA B 1132 1 13 HELIX 56 56 GLU B 1133 ARG B 1145 1 13 HELIX 57 57 HIS B 1147 TYR B 1154 1 8 HELIX 58 58 GLY B 1157 LYS B 1166 1 10 CRYST1 35.835 65.642 313.975 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003185 0.00000