data_3BTX # _entry.id 3BTX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BTX pdb_00003btx 10.2210/pdb3btx/pdb NDB PD1070 ? ? RCSB RCSB045951 ? ? WWPDB D_1000045951 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FD8 'E. coli homolog' unspecified PDB 2IUW 'human homolog' unspecified PDB 3BTY . unspecified PDB 3BTZ . unspecified PDB 3BU0 . unspecified PDB 3BUC . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BTX _pdbx_database_status.recvd_initial_deposition_date 2007-12-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, C.-G.' 1 'Yi, C.' 2 'He, C.' 3 # _citation.id primary _citation.title 'Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.' _citation.journal_abbrev Nature _citation.journal_volume 452 _citation.page_first 961 _citation.page_last 965 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18432238 _citation.pdbx_database_id_DOI 10.1038/nature06889 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, C.G.' 1 ? primary 'Yi, C.' 2 ? primary 'Duguid, E.M.' 3 ? primary 'Sullivan, C.T.' 4 ? primary 'Jian, X.' 5 ? primary 'Rice, P.A.' 6 ? primary 'He, C.' 7 ? # _cell.entry_id 3BTX _cell.length_a 78.140 _cell.length_b 78.140 _cell.length_c 229.590 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BTX _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23135.430 1 1.14.11.- 'C67S, C165S, C192S, E175C' ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3') ; 4017.701 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3') ; 3943.613 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 192 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ASWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; ;ASWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(DA)(DT)(2YR)(DA)(DT)(DT)(DG)(DC)(DG)' CTGTATXATTGCG B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DA)(DA)(DT)(DA)(DA)(DT)(DA)(DC)(DA)' TCGCAATAATACA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 TRP n 1 4 ARG n 1 5 HIS n 1 6 ILE n 1 7 ARG n 1 8 ALA n 1 9 GLU n 1 10 GLY n 1 11 LEU n 1 12 ASP n 1 13 SER n 1 14 SER n 1 15 TYR n 1 16 THR n 1 17 VAL n 1 18 LEU n 1 19 PHE n 1 20 GLY n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 ALA n 1 25 ASP n 1 26 GLU n 1 27 ILE n 1 28 PHE n 1 29 GLN n 1 30 GLU n 1 31 LEU n 1 32 GLU n 1 33 LYS n 1 34 GLU n 1 35 VAL n 1 36 GLU n 1 37 TYR n 1 38 PHE n 1 39 THR n 1 40 GLY n 1 41 ALA n 1 42 LEU n 1 43 ALA n 1 44 ARG n 1 45 VAL n 1 46 GLN n 1 47 VAL n 1 48 PHE n 1 49 GLY n 1 50 LYS n 1 51 TRP n 1 52 HIS n 1 53 SER n 1 54 VAL n 1 55 PRO n 1 56 ARG n 1 57 LYS n 1 58 GLN n 1 59 ALA n 1 60 THR n 1 61 TYR n 1 62 GLY n 1 63 ASP n 1 64 ALA n 1 65 GLY n 1 66 LEU n 1 67 THR n 1 68 TYR n 1 69 THR n 1 70 PHE n 1 71 SER n 1 72 GLY n 1 73 LEU n 1 74 THR n 1 75 LEU n 1 76 SER n 1 77 PRO n 1 78 LYS n 1 79 PRO n 1 80 TRP n 1 81 ILE n 1 82 PRO n 1 83 VAL n 1 84 LEU n 1 85 GLU n 1 86 ARG n 1 87 ILE n 1 88 ARG n 1 89 ASP n 1 90 HIS n 1 91 VAL n 1 92 SER n 1 93 GLY n 1 94 VAL n 1 95 THR n 1 96 GLY n 1 97 GLN n 1 98 THR n 1 99 PHE n 1 100 ASN n 1 101 PHE n 1 102 VAL n 1 103 LEU n 1 104 ILE n 1 105 ASN n 1 106 ARG n 1 107 TYR n 1 108 LYS n 1 109 ASP n 1 110 GLY n 1 111 SER n 1 112 ASP n 1 113 HIS n 1 114 ILE n 1 115 GLY n 1 116 GLU n 1 117 HIS n 1 118 ARG n 1 119 ASP n 1 120 ASP n 1 121 CYS n 1 122 ARG n 1 123 GLU n 1 124 LEU n 1 125 ALA n 1 126 PRO n 1 127 GLY n 1 128 SER n 1 129 PRO n 1 130 ILE n 1 131 ALA n 1 132 SER n 1 133 VAL n 1 134 SER n 1 135 PHE n 1 136 GLY n 1 137 ALA n 1 138 SER n 1 139 ARG n 1 140 ASP n 1 141 PHE n 1 142 VAL n 1 143 PHE n 1 144 ARG n 1 145 HIS n 1 146 LYS n 1 147 ASP n 1 148 SER n 1 149 ARG n 1 150 GLY n 1 151 LYS n 1 152 SER n 1 153 PRO n 1 154 SER n 1 155 ARG n 1 156 ARG n 1 157 VAL n 1 158 ALA n 1 159 VAL n 1 160 VAL n 1 161 ARG n 1 162 LEU n 1 163 PRO n 1 164 LEU n 1 165 ALA n 1 166 HIS n 1 167 GLY n 1 168 SER n 1 169 LEU n 1 170 LEU n 1 171 MET n 1 172 MET n 1 173 ASN n 1 174 HIS n 1 175 PRO n 1 176 THR n 1 177 ASN n 1 178 THR n 1 179 HIS n 1 180 TRP n 1 181 TYR n 1 182 HIS n 1 183 SER n 1 184 LEU n 1 185 PRO n 1 186 VAL n 1 187 ARG n 1 188 LYS n 1 189 LYS n 1 190 VAL n 1 191 LEU n 1 192 ALA n 1 193 PRO n 1 194 ARG n 1 195 VAL n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 LYS n 1 202 ILE n 1 203 LEU n 1 204 LEU n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 2YR n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DA n 3 7 DT n 3 8 DA n 3 9 DA n 3 10 DT n 3 11 DA n 3 12 DC n 3 13 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 12q24.11 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; 56 ? 2 PDB 3BTX 3BTX 2 CTGTATCATTGCG ? ? 3 PDB 3BTX 3BTX 3 TCGCAATAATACA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BTX A 2 ? 204 ? Q6NS38 56 ? 258 ? 56 258 2 2 3BTX B 1 ? 13 ? 3BTX 259 ? 271 ? 259 271 3 3 3BTX C 1 ? 13 ? 3BTX 272 ? 284 ? 272 284 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BTX ALA A 1 ? UNP Q6NS38 ? ? 'expression tag' 55 1 1 3BTX SER A 13 ? UNP Q6NS38 CYS 67 'engineered mutation' 67 2 1 3BTX SER A 111 ? UNP Q6NS38 CYS 165 'engineered mutation' 165 3 1 3BTX CYS A 121 ? UNP Q6NS38 GLU 175 'engineered mutation' 175 4 1 3BTX SER A 138 ? UNP Q6NS38 CYS 192 'engineered mutation' 192 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BTX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.25 _exptl_crystal.density_percent_sol 62.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;8% PEG 8000, 0.1M sodium chloride, 0.05M magnesium chloride, 0.1M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 'sodium chloride' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 cacodylate ? ? ? 1 5 2 'PEG 8000' ? ? ? 1 6 2 'sodium chloride' ? ? ? 1 7 2 'magnesium chloride' ? ? ? 1 8 2 cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9266 # _reflns.entry_id 3BTX _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50.0 _reflns.number_all 28880 _reflns.number_obs 28880 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 91.9 _reflns_shell.Rmerge_I_obs 0.398 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2606 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BTX _refine.ls_number_reflns_obs 26213 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 95.40 _refine.ls_R_factor_obs 0.21974 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21927 _refine.ls_R_factor_R_free 0.22797 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1423 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 43.730 _refine.aniso_B[1][1] -0.28 _refine.aniso_B[2][2] -0.28 _refine.aniso_B[3][3] 0.42 _refine.aniso_B[1][2] -0.14 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.173 _refine.pdbx_overall_ESU_R_Free 0.143 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 7.452 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1636 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 2356 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 2340 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.206 2.234 ? 3285 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.485 5.000 ? 220 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.241 21.205 ? 83 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.988 15.000 ? 301 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.157 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 356 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1624 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.171 0.200 ? 858 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.295 0.200 ? 1485 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.121 0.200 ? 205 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.156 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.190 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.384 1.500 ? 1080 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.669 2.000 ? 1705 'X-RAY DIFFRACTION' ? r_scbond_it 1.004 3.000 ? 1597 'X-RAY DIFFRACTION' ? r_scangle_it 1.624 4.500 ? 1573 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.051 _refine_ls_shell.number_reflns_R_work 1608 _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.percent_reflns_obs 81.72 _refine_ls_shell.R_factor_R_free 0.34 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BTX _struct.title 'X-ray structure of human ABH2 bound to dsDNA through active site cross-linking' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BTX _struct_keywords.pdbx_keywords Oxidoreductase/DNA _struct_keywords.text ;protein/DNA interaction, human dioxygenase, DNA repair, cross-linking, DNA damage, Iron, Metal-binding, Nucleus, Oxidoreductase, Oxidoreductase-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 20 ? VAL A 35 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 THR A 39 ? LEU A 42 ? THR A 93 LEU A 96 5 ? 4 HELX_P HELX_P3 3 ILE A 81 ? GLY A 96 ? ILE A 135 GLY A 150 1 ? 16 HELX_P HELX_P4 4 ASP A 147 ? ARG A 149 ? ASP A 201 ARG A 203 5 ? 3 HELX_P HELX_P5 5 PRO A 175 ? HIS A 179 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 121 SG ? ? ? 1_555 B 2YR 7 S ? ? A CYS 175 B 2YR 265 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale2 covale both ? B DT 6 "O3'" ? ? ? 1_555 B 2YR 7 P ? ? B DT 264 B 2YR 265 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale both ? B 2YR 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B 2YR 265 B DA 266 1_555 ? ? ? ? ? ? ? 1.586 ? ? metalc1 metalc ? ? A ASP 119 OD1 ? ? ? 1_555 D MG . MG ? ? A ASP 173 A MG 301 1_555 ? ? ? ? ? ? ? 2.579 ? ? metalc2 metalc ? ? A ASP 119 OD2 ? ? ? 1_555 D MG . MG ? ? A ASP 173 A MG 301 1_555 ? ? ? ? ? ? ? 2.673 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 301 A HOH 518 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 301 A HOH 519 1_555 ? ? ? ? ? ? ? 2.434 ? ? hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 262 C DA 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 262 C DA 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 263 C DT 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 263 C DT 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 264 C DA 280 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 264 C DA 280 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 8 N3 ? ? ? 1_555 C DA 8 N6 ? ? B DA 266 C DA 279 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog13 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 267 C DA 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 267 C DA 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 174 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 175 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.21 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 4 ? ALA A 8 ? ARG A 58 ALA A 62 A 2 LEU A 11 ? VAL A 17 ? LEU A 65 VAL A 71 A 3 SER A 168 ? MET A 172 ? SER A 222 MET A 226 A 4 ILE A 130 ? GLY A 136 ? ILE A 184 GLY A 190 A 5 ARG A 194 ? ARG A 200 ? ARG A 248 ARG A 254 A 6 PHE A 101 ? TYR A 107 ? PHE A 155 TYR A 161 A 7 LYS A 57 ? GLY A 62 ? LYS A 111 GLY A 116 B 1 ARG A 44 ? VAL A 47 ? ARG A 98 VAL A 101 B 2 LYS A 50 ? SER A 53 ? LYS A 104 SER A 107 C 1 TYR A 68 ? PHE A 70 ? TYR A 122 PHE A 124 C 2 LEU A 73 ? LEU A 75 ? LEU A 127 LEU A 129 D 1 ILE A 114 ? HIS A 117 ? ILE A 168 HIS A 171 D 2 TRP A 180 ? LEU A 184 ? TRP A 234 LEU A 238 D 3 ARG A 139 ? HIS A 145 ? ARG A 193 HIS A 199 D 4 VAL A 160 ? LEU A 164 ? VAL A 214 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 60 O SER A 13 ? O SER A 67 A 2 3 N THR A 16 ? N THR A 70 O LEU A 169 ? O LEU A 223 A 3 4 O LEU A 170 ? O LEU A 224 N SER A 132 ? N SER A 186 A 4 5 N VAL A 133 ? N VAL A 187 O LEU A 197 ? O LEU A 251 A 5 6 O THR A 198 ? O THR A 252 N LEU A 103 ? N LEU A 157 A 6 7 O ILE A 104 ? O ILE A 158 N ALA A 59 ? N ALA A 113 B 1 2 N VAL A 45 ? N VAL A 99 O HIS A 52 ? O HIS A 106 C 1 2 N TYR A 68 ? N TYR A 122 O LEU A 75 ? O LEU A 129 D 1 2 N HIS A 117 ? N HIS A 171 O HIS A 182 ? O HIS A 236 D 2 3 O TYR A 181 ? O TYR A 235 N ARG A 144 ? N ARG A 198 D 3 4 N PHE A 143 ? N PHE A 197 O VAL A 160 ? O VAL A 214 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 117 ? HIS A 171 . ? 1_555 ? 2 AC1 5 ASP A 119 ? ASP A 173 . ? 1_555 ? 3 AC1 5 HIS A 182 ? HIS A 236 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 518 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 519 . ? 1_555 ? # _database_PDB_matrix.entry_id 3BTX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BTX _atom_sites.fract_transf_matrix[1][1] 0.012798 _atom_sites.fract_transf_matrix[1][2] 0.007389 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014777 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004356 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 55 55 ALA ALA A . n A 1 2 SER 2 56 56 SER SER A . n A 1 3 TRP 3 57 57 TRP TRP A . n A 1 4 ARG 4 58 58 ARG ARG A . n A 1 5 HIS 5 59 59 HIS HIS A . n A 1 6 ILE 6 60 60 ILE ILE A . n A 1 7 ARG 7 61 61 ARG ARG A . n A 1 8 ALA 8 62 62 ALA ALA A . n A 1 9 GLU 9 63 63 GLU GLU A . n A 1 10 GLY 10 64 64 GLY GLY A . n A 1 11 LEU 11 65 65 LEU LEU A . n A 1 12 ASP 12 66 66 ASP ASP A . n A 1 13 SER 13 67 67 SER SER A . n A 1 14 SER 14 68 68 SER SER A . n A 1 15 TYR 15 69 69 TYR TYR A . n A 1 16 THR 16 70 70 THR THR A . n A 1 17 VAL 17 71 71 VAL VAL A . n A 1 18 LEU 18 72 72 LEU LEU A . n A 1 19 PHE 19 73 73 PHE PHE A . n A 1 20 GLY 20 74 74 GLY GLY A . n A 1 21 LYS 21 75 75 LYS LYS A . n A 1 22 ALA 22 76 76 ALA ALA A . n A 1 23 GLU 23 77 77 GLU GLU A . n A 1 24 ALA 24 78 78 ALA ALA A . n A 1 25 ASP 25 79 79 ASP ASP A . n A 1 26 GLU 26 80 80 GLU GLU A . n A 1 27 ILE 27 81 81 ILE ILE A . n A 1 28 PHE 28 82 82 PHE PHE A . n A 1 29 GLN 29 83 83 GLN GLN A . n A 1 30 GLU 30 84 84 GLU GLU A . n A 1 31 LEU 31 85 85 LEU LEU A . n A 1 32 GLU 32 86 86 GLU GLU A . n A 1 33 LYS 33 87 87 LYS LYS A . n A 1 34 GLU 34 88 88 GLU GLU A . n A 1 35 VAL 35 89 89 VAL VAL A . n A 1 36 GLU 36 90 90 GLU GLU A . n A 1 37 TYR 37 91 91 TYR TYR A . n A 1 38 PHE 38 92 92 PHE PHE A . n A 1 39 THR 39 93 93 THR THR A . n A 1 40 GLY 40 94 94 GLY GLY A . n A 1 41 ALA 41 95 95 ALA ALA A . n A 1 42 LEU 42 96 96 LEU LEU A . n A 1 43 ALA 43 97 97 ALA ALA A . n A 1 44 ARG 44 98 98 ARG ARG A . n A 1 45 VAL 45 99 99 VAL VAL A . n A 1 46 GLN 46 100 100 GLN GLN A . n A 1 47 VAL 47 101 101 VAL VAL A . n A 1 48 PHE 48 102 102 PHE PHE A . n A 1 49 GLY 49 103 103 GLY GLY A . n A 1 50 LYS 50 104 104 LYS LYS A . n A 1 51 TRP 51 105 105 TRP TRP A . n A 1 52 HIS 52 106 106 HIS HIS A . n A 1 53 SER 53 107 107 SER SER A . n A 1 54 VAL 54 108 108 VAL VAL A . n A 1 55 PRO 55 109 109 PRO PRO A . n A 1 56 ARG 56 110 110 ARG ARG A . n A 1 57 LYS 57 111 111 LYS LYS A . n A 1 58 GLN 58 112 112 GLN GLN A . n A 1 59 ALA 59 113 113 ALA ALA A . n A 1 60 THR 60 114 114 THR THR A . n A 1 61 TYR 61 115 115 TYR TYR A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 ASP 63 117 117 ASP ASP A . n A 1 64 ALA 64 118 118 ALA ALA A . n A 1 65 GLY 65 119 119 GLY GLY A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 THR 67 121 121 THR THR A . n A 1 68 TYR 68 122 122 TYR TYR A . n A 1 69 THR 69 123 123 THR THR A . n A 1 70 PHE 70 124 124 PHE PHE A . n A 1 71 SER 71 125 125 SER SER A . n A 1 72 GLY 72 126 126 GLY GLY A . n A 1 73 LEU 73 127 127 LEU LEU A . n A 1 74 THR 74 128 128 THR THR A . n A 1 75 LEU 75 129 129 LEU LEU A . n A 1 76 SER 76 130 130 SER SER A . n A 1 77 PRO 77 131 131 PRO PRO A . n A 1 78 LYS 78 132 132 LYS LYS A . n A 1 79 PRO 79 133 133 PRO PRO A . n A 1 80 TRP 80 134 134 TRP TRP A . n A 1 81 ILE 81 135 135 ILE ILE A . n A 1 82 PRO 82 136 136 PRO PRO A . n A 1 83 VAL 83 137 137 VAL VAL A . n A 1 84 LEU 84 138 138 LEU LEU A . n A 1 85 GLU 85 139 139 GLU GLU A . n A 1 86 ARG 86 140 140 ARG ARG A . n A 1 87 ILE 87 141 141 ILE ILE A . n A 1 88 ARG 88 142 142 ARG ARG A . n A 1 89 ASP 89 143 143 ASP ASP A . n A 1 90 HIS 90 144 144 HIS HIS A . n A 1 91 VAL 91 145 145 VAL VAL A . n A 1 92 SER 92 146 146 SER SER A . n A 1 93 GLY 93 147 147 GLY GLY A . n A 1 94 VAL 94 148 148 VAL VAL A . n A 1 95 THR 95 149 149 THR THR A . n A 1 96 GLY 96 150 150 GLY GLY A . n A 1 97 GLN 97 151 151 GLN GLN A . n A 1 98 THR 98 152 152 THR THR A . n A 1 99 PHE 99 153 153 PHE PHE A . n A 1 100 ASN 100 154 154 ASN ASN A . n A 1 101 PHE 101 155 155 PHE PHE A . n A 1 102 VAL 102 156 156 VAL VAL A . n A 1 103 LEU 103 157 157 LEU LEU A . n A 1 104 ILE 104 158 158 ILE ILE A . n A 1 105 ASN 105 159 159 ASN ASN A . n A 1 106 ARG 106 160 160 ARG ARG A . n A 1 107 TYR 107 161 161 TYR TYR A . n A 1 108 LYS 108 162 162 LYS LYS A . n A 1 109 ASP 109 163 163 ASP ASP A . n A 1 110 GLY 110 164 164 GLY GLY A . n A 1 111 SER 111 165 165 SER SER A . n A 1 112 ASP 112 166 166 ASP ASP A . n A 1 113 HIS 113 167 167 HIS HIS A . n A 1 114 ILE 114 168 168 ILE ILE A . n A 1 115 GLY 115 169 169 GLY GLY A . n A 1 116 GLU 116 170 170 GLU GLU A . n A 1 117 HIS 117 171 171 HIS HIS A . n A 1 118 ARG 118 172 172 ARG ARG A . n A 1 119 ASP 119 173 173 ASP ASP A . n A 1 120 ASP 120 174 174 ASP ASP A . n A 1 121 CYS 121 175 175 CYS CYS A . n A 1 122 ARG 122 176 176 ARG ARG A . n A 1 123 GLU 123 177 177 GLU GLU A . n A 1 124 LEU 124 178 178 LEU LEU A . n A 1 125 ALA 125 179 179 ALA ALA A . n A 1 126 PRO 126 180 180 PRO PRO A . n A 1 127 GLY 127 181 181 GLY GLY A . n A 1 128 SER 128 182 182 SER SER A . n A 1 129 PRO 129 183 183 PRO PRO A . n A 1 130 ILE 130 184 184 ILE ILE A . n A 1 131 ALA 131 185 185 ALA ALA A . n A 1 132 SER 132 186 186 SER SER A . n A 1 133 VAL 133 187 187 VAL VAL A . n A 1 134 SER 134 188 188 SER SER A . n A 1 135 PHE 135 189 189 PHE PHE A . n A 1 136 GLY 136 190 190 GLY GLY A . n A 1 137 ALA 137 191 191 ALA ALA A . n A 1 138 SER 138 192 192 SER SER A . n A 1 139 ARG 139 193 193 ARG ARG A . n A 1 140 ASP 140 194 194 ASP ASP A . n A 1 141 PHE 141 195 195 PHE PHE A . n A 1 142 VAL 142 196 196 VAL VAL A . n A 1 143 PHE 143 197 197 PHE PHE A . n A 1 144 ARG 144 198 198 ARG ARG A . n A 1 145 HIS 145 199 199 HIS HIS A . n A 1 146 LYS 146 200 200 LYS LYS A . n A 1 147 ASP 147 201 201 ASP ASP A . n A 1 148 SER 148 202 202 SER SER A . n A 1 149 ARG 149 203 203 ARG ARG A . n A 1 150 GLY 150 204 204 GLY GLY A . n A 1 151 LYS 151 205 205 LYS LYS A . n A 1 152 SER 152 206 206 SER SER A . n A 1 153 PRO 153 207 207 PRO PRO A . n A 1 154 SER 154 208 208 SER SER A . n A 1 155 ARG 155 209 209 ARG ARG A . n A 1 156 ARG 156 210 210 ARG ARG A . n A 1 157 VAL 157 211 211 VAL VAL A . n A 1 158 ALA 158 212 212 ALA ALA A . n A 1 159 VAL 159 213 213 VAL VAL A . n A 1 160 VAL 160 214 214 VAL VAL A . n A 1 161 ARG 161 215 215 ARG ARG A . n A 1 162 LEU 162 216 216 LEU LEU A . n A 1 163 PRO 163 217 217 PRO PRO A . n A 1 164 LEU 164 218 218 LEU LEU A . n A 1 165 ALA 165 219 219 ALA ALA A . n A 1 166 HIS 166 220 220 HIS HIS A . n A 1 167 GLY 167 221 221 GLY GLY A . n A 1 168 SER 168 222 222 SER SER A . n A 1 169 LEU 169 223 223 LEU LEU A . n A 1 170 LEU 170 224 224 LEU LEU A . n A 1 171 MET 171 225 225 MET MET A . n A 1 172 MET 172 226 226 MET MET A . n A 1 173 ASN 173 227 227 ASN ASN A . n A 1 174 HIS 174 228 228 HIS HIS A . n A 1 175 PRO 175 229 229 PRO PRO A . n A 1 176 THR 176 230 230 THR THR A . n A 1 177 ASN 177 231 231 ASN ASN A . n A 1 178 THR 178 232 232 THR THR A . n A 1 179 HIS 179 233 233 HIS HIS A . n A 1 180 TRP 180 234 234 TRP TRP A . n A 1 181 TYR 181 235 235 TYR TYR A . n A 1 182 HIS 182 236 236 HIS HIS A . n A 1 183 SER 183 237 237 SER SER A . n A 1 184 LEU 184 238 238 LEU LEU A . n A 1 185 PRO 185 239 239 PRO PRO A . n A 1 186 VAL 186 240 240 VAL VAL A . n A 1 187 ARG 187 241 241 ARG ARG A . n A 1 188 LYS 188 242 242 LYS LYS A . n A 1 189 LYS 189 243 243 LYS LYS A . n A 1 190 VAL 190 244 244 VAL VAL A . n A 1 191 LEU 191 245 245 LEU LEU A . n A 1 192 ALA 192 246 246 ALA ALA A . n A 1 193 PRO 193 247 247 PRO PRO A . n A 1 194 ARG 194 248 248 ARG ARG A . n A 1 195 VAL 195 249 249 VAL VAL A . n A 1 196 ASN 196 250 250 ASN ASN A . n A 1 197 LEU 197 251 251 LEU LEU A . n A 1 198 THR 198 252 252 THR THR A . n A 1 199 PHE 199 253 253 PHE PHE A . n A 1 200 ARG 200 254 254 ARG ARG A . n A 1 201 LYS 201 255 255 LYS LYS A . n A 1 202 ILE 202 256 256 ILE ILE A . n A 1 203 LEU 203 257 257 LEU LEU A . n A 1 204 LEU 204 258 258 LEU LEU A . n B 2 1 DC 1 259 259 DC DC B . n B 2 2 DT 2 260 260 DT DT B . n B 2 3 DG 3 261 261 DG DG B . n B 2 4 DT 4 262 262 DT DT B . n B 2 5 DA 5 263 263 DA DA B . n B 2 6 DT 6 264 264 DT DT B . n B 2 7 2YR 7 265 265 2YR DC B . n B 2 8 DA 8 266 266 DA DA B . n B 2 9 DT 9 267 267 DT DT B . n B 2 10 DT 10 268 268 DT DT B . n B 2 11 DG 11 269 269 DG DG B . n B 2 12 DC 12 270 270 DC DC B . n B 2 13 DG 13 271 271 DG DG B . n C 3 1 DT 1 272 272 DT DT C . n C 3 2 DC 2 273 273 DC DC C . n C 3 3 DG 3 274 274 DG DG C . n C 3 4 DC 4 275 275 DC DC C . n C 3 5 DA 5 276 276 DA DA C . n C 3 6 DA 6 277 277 DA DA C . n C 3 7 DT 7 278 278 DT DT C . n C 3 8 DA 8 279 279 DA DA C . n C 3 9 DA 9 280 280 DA DA C . n C 3 10 DT 10 281 281 DT DT C . n C 3 11 DA 11 282 282 DA DA C . n C 3 12 DC 12 283 283 DC DC C . n C 3 13 DA 13 284 284 DA DA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 301 1 MG MG A . E 5 HOH 1 401 1 HOH HOH A . E 5 HOH 2 402 2 HOH HOH A . E 5 HOH 3 403 4 HOH HOH A . E 5 HOH 4 404 5 HOH HOH A . E 5 HOH 5 405 6 HOH HOH A . E 5 HOH 6 406 7 HOH HOH A . E 5 HOH 7 407 8 HOH HOH A . E 5 HOH 8 408 9 HOH HOH A . E 5 HOH 9 409 10 HOH HOH A . E 5 HOH 10 410 12 HOH HOH A . E 5 HOH 11 411 13 HOH HOH A . E 5 HOH 12 412 14 HOH HOH A . E 5 HOH 13 413 15 HOH HOH A . E 5 HOH 14 414 18 HOH HOH A . E 5 HOH 15 415 19 HOH HOH A . E 5 HOH 16 416 20 HOH HOH A . E 5 HOH 17 417 22 HOH HOH A . E 5 HOH 18 418 23 HOH HOH A . E 5 HOH 19 419 24 HOH HOH A . E 5 HOH 20 420 25 HOH HOH A . E 5 HOH 21 421 26 HOH HOH A . E 5 HOH 22 422 27 HOH HOH A . E 5 HOH 23 423 28 HOH HOH A . E 5 HOH 24 424 29 HOH HOH A . E 5 HOH 25 425 30 HOH HOH A . E 5 HOH 26 426 31 HOH HOH A . E 5 HOH 27 427 32 HOH HOH A . E 5 HOH 28 428 33 HOH HOH A . E 5 HOH 29 429 35 HOH HOH A . E 5 HOH 30 430 36 HOH HOH A . E 5 HOH 31 431 37 HOH HOH A . E 5 HOH 32 432 38 HOH HOH A . E 5 HOH 33 433 39 HOH HOH A . E 5 HOH 34 434 42 HOH HOH A . E 5 HOH 35 435 43 HOH HOH A . E 5 HOH 36 436 45 HOH HOH A . E 5 HOH 37 437 47 HOH HOH A . E 5 HOH 38 438 48 HOH HOH A . E 5 HOH 39 439 49 HOH HOH A . E 5 HOH 40 440 50 HOH HOH A . E 5 HOH 41 441 52 HOH HOH A . E 5 HOH 42 442 53 HOH HOH A . E 5 HOH 43 443 54 HOH HOH A . E 5 HOH 44 444 55 HOH HOH A . E 5 HOH 45 445 56 HOH HOH A . E 5 HOH 46 446 59 HOH HOH A . E 5 HOH 47 447 62 HOH HOH A . E 5 HOH 48 448 63 HOH HOH A . E 5 HOH 49 449 64 HOH HOH A . E 5 HOH 50 450 65 HOH HOH A . E 5 HOH 51 451 67 HOH HOH A . E 5 HOH 52 452 69 HOH HOH A . E 5 HOH 53 453 70 HOH HOH A . E 5 HOH 54 454 71 HOH HOH A . E 5 HOH 55 455 72 HOH HOH A . E 5 HOH 56 456 73 HOH HOH A . E 5 HOH 57 457 74 HOH HOH A . E 5 HOH 58 458 75 HOH HOH A . E 5 HOH 59 459 76 HOH HOH A . E 5 HOH 60 460 77 HOH HOH A . E 5 HOH 61 461 78 HOH HOH A . E 5 HOH 62 462 79 HOH HOH A . E 5 HOH 63 463 81 HOH HOH A . E 5 HOH 64 464 82 HOH HOH A . E 5 HOH 65 465 83 HOH HOH A . E 5 HOH 66 466 84 HOH HOH A . E 5 HOH 67 467 85 HOH HOH A . E 5 HOH 68 468 86 HOH HOH A . E 5 HOH 69 469 87 HOH HOH A . E 5 HOH 70 470 88 HOH HOH A . E 5 HOH 71 471 89 HOH HOH A . E 5 HOH 72 472 90 HOH HOH A . E 5 HOH 73 473 92 HOH HOH A . E 5 HOH 74 474 93 HOH HOH A . E 5 HOH 75 475 95 HOH HOH A . E 5 HOH 76 476 96 HOH HOH A . E 5 HOH 77 477 97 HOH HOH A . E 5 HOH 78 478 98 HOH HOH A . E 5 HOH 79 479 99 HOH HOH A . E 5 HOH 80 480 100 HOH HOH A . E 5 HOH 81 481 101 HOH HOH A . E 5 HOH 82 482 102 HOH HOH A . E 5 HOH 83 483 103 HOH HOH A . E 5 HOH 84 484 104 HOH HOH A . E 5 HOH 85 485 105 HOH HOH A . E 5 HOH 86 486 106 HOH HOH A . E 5 HOH 87 487 107 HOH HOH A . E 5 HOH 88 488 108 HOH HOH A . E 5 HOH 89 489 109 HOH HOH A . E 5 HOH 90 490 113 HOH HOH A . E 5 HOH 91 491 117 HOH HOH A . E 5 HOH 92 492 118 HOH HOH A . E 5 HOH 93 493 119 HOH HOH A . E 5 HOH 94 494 120 HOH HOH A . E 5 HOH 95 495 121 HOH HOH A . E 5 HOH 96 496 122 HOH HOH A . E 5 HOH 97 497 123 HOH HOH A . E 5 HOH 98 498 124 HOH HOH A . E 5 HOH 99 499 125 HOH HOH A . E 5 HOH 100 500 126 HOH HOH A . E 5 HOH 101 501 127 HOH HOH A . E 5 HOH 102 502 128 HOH HOH A . E 5 HOH 103 503 129 HOH HOH A . E 5 HOH 104 504 130 HOH HOH A . E 5 HOH 105 505 131 HOH HOH A . E 5 HOH 106 506 132 HOH HOH A . E 5 HOH 107 507 136 HOH HOH A . E 5 HOH 108 508 137 HOH HOH A . E 5 HOH 109 509 138 HOH HOH A . E 5 HOH 110 510 139 HOH HOH A . E 5 HOH 111 511 140 HOH HOH A . E 5 HOH 112 512 141 HOH HOH A . E 5 HOH 113 513 142 HOH HOH A . E 5 HOH 114 514 143 HOH HOH A . E 5 HOH 115 515 144 HOH HOH A . E 5 HOH 116 516 145 HOH HOH A . E 5 HOH 117 517 147 HOH HOH A . E 5 HOH 118 518 148 HOH HOH A . E 5 HOH 119 519 149 HOH HOH A . E 5 HOH 120 520 150 HOH HOH A . E 5 HOH 121 521 151 HOH HOH A . E 5 HOH 122 522 152 HOH HOH A . E 5 HOH 123 523 156 HOH HOH A . E 5 HOH 124 524 157 HOH HOH A . E 5 HOH 125 525 158 HOH HOH A . E 5 HOH 126 526 159 HOH HOH A . E 5 HOH 127 527 160 HOH HOH A . E 5 HOH 128 528 163 HOH HOH A . E 5 HOH 129 529 164 HOH HOH A . E 5 HOH 130 530 165 HOH HOH A . E 5 HOH 131 531 166 HOH HOH A . E 5 HOH 132 532 167 HOH HOH A . E 5 HOH 133 533 168 HOH HOH A . E 5 HOH 134 534 169 HOH HOH A . E 5 HOH 135 535 170 HOH HOH A . E 5 HOH 136 536 171 HOH HOH A . E 5 HOH 137 537 172 HOH HOH A . E 5 HOH 138 538 173 HOH HOH A . E 5 HOH 139 539 174 HOH HOH A . E 5 HOH 140 540 175 HOH HOH A . E 5 HOH 141 541 176 HOH HOH A . E 5 HOH 142 542 177 HOH HOH A . E 5 HOH 143 543 181 HOH HOH A . E 5 HOH 144 544 187 HOH HOH A . E 5 HOH 145 545 188 HOH HOH A . E 5 HOH 146 546 192 HOH HOH A . F 5 HOH 1 301 16 HOH HOH B . F 5 HOH 2 302 17 HOH HOH B . F 5 HOH 3 303 21 HOH HOH B . F 5 HOH 4 304 34 HOH HOH B . F 5 HOH 5 305 51 HOH HOH B . F 5 HOH 6 306 58 HOH HOH B . F 5 HOH 7 307 60 HOH HOH B . F 5 HOH 8 308 66 HOH HOH B . F 5 HOH 9 309 68 HOH HOH B . F 5 HOH 10 310 91 HOH HOH B . F 5 HOH 11 311 110 HOH HOH B . F 5 HOH 12 312 111 HOH HOH B . F 5 HOH 13 313 112 HOH HOH B . F 5 HOH 14 314 114 HOH HOH B . F 5 HOH 15 315 134 HOH HOH B . F 5 HOH 16 316 155 HOH HOH B . F 5 HOH 17 317 180 HOH HOH B . F 5 HOH 18 318 185 HOH HOH B . F 5 HOH 19 319 186 HOH HOH B . F 5 HOH 20 320 189 HOH HOH B . F 5 HOH 21 321 190 HOH HOH B . F 5 HOH 22 322 191 HOH HOH B . G 5 HOH 1 301 3 HOH HOH C . G 5 HOH 2 302 11 HOH HOH C . G 5 HOH 3 303 40 HOH HOH C . G 5 HOH 4 304 41 HOH HOH C . G 5 HOH 5 305 44 HOH HOH C . G 5 HOH 6 306 46 HOH HOH C . G 5 HOH 7 307 57 HOH HOH C . G 5 HOH 8 308 61 HOH HOH C . G 5 HOH 9 309 80 HOH HOH C . G 5 HOH 10 310 94 HOH HOH C . G 5 HOH 11 311 115 HOH HOH C . G 5 HOH 12 312 116 HOH HOH C . G 5 HOH 13 313 133 HOH HOH C . G 5 HOH 14 314 135 HOH HOH C . G 5 HOH 15 315 146 HOH HOH C . G 5 HOH 16 316 153 HOH HOH C . G 5 HOH 17 317 154 HOH HOH C . G 5 HOH 18 318 161 HOH HOH C . G 5 HOH 19 319 162 HOH HOH C . G 5 HOH 20 320 178 HOH HOH C . G 5 HOH 21 321 179 HOH HOH C . G 5 HOH 22 322 182 HOH HOH C . G 5 HOH 23 323 183 HOH HOH C . G 5 HOH 24 324 184 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4020 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 OD2 ? A ASP 119 ? A ASP 173 ? 1_555 49.3 ? 2 OD1 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 518 ? 1_555 69.1 ? 3 OD2 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 518 ? 1_555 100.1 ? 4 OD1 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 519 ? 1_555 131.4 ? 5 OD2 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 519 ? 1_555 108.4 ? 6 O ? E HOH . ? A HOH 518 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 519 ? 1_555 75.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-05-21 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 4 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 110.5076 -2.4455 -194.9771 -0.1568 -0.1853 -0.1434 -0.0166 0.0552 -0.0287 5.2437 3.7851 1.5170 -2.2613 0.4794 -0.7521 0.0972 0.3139 -0.2067 -0.5901 0.0930 -0.0939 0.1978 -0.0014 -0.1902 'X-RAY DIFFRACTION' 2 ? refined 87.9091 2.4348 -195.3908 -0.0712 -0.1027 -0.1193 0.0405 0.0245 0.1817 4.1413 1.2854 2.0222 1.4087 1.1010 1.2687 -0.1789 -0.2030 -0.1360 -0.1472 0.2430 0.3376 0.0658 -0.3868 -0.0641 'X-RAY DIFFRACTION' 3 ? refined 90.0645 4.0602 -194.8220 -0.1328 0.0006 -0.1319 -0.0411 0.0096 0.1271 2.7178 3.2106 16.1318 -1.4418 3.3653 -5.1379 -0.0902 -0.3987 -0.1611 -0.1325 0.3980 0.5003 -0.2811 -0.4573 -0.3077 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 55 C 1 A 258 C 204 ? 'X-RAY DIFFRACTION' ? 2 2 B 259 A 1 B 271 A 13 ? 'X-RAY DIFFRACTION' ? 3 3 C 272 B 1 C 284 B 13 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 262 ? ? "C1'" B DT 262 ? ? N1 B DT 262 ? ? 111.27 108.30 2.97 0.30 N 2 1 "O4'" B DT 267 ? ? "C1'" B DT 267 ? ? N1 B DT 267 ? ? 110.43 108.30 2.13 0.30 N 3 1 "O4'" B DT 268 ? ? "C1'" B DT 268 ? ? N1 B DT 268 ? ? 102.07 108.00 -5.93 0.70 N 4 1 "O4'" C DC 275 ? ? "C1'" C DC 275 ? ? N1 C DC 275 ? ? 112.31 108.30 4.01 0.30 N 5 1 "O4'" C DT 278 ? ? "C1'" C DT 278 ? ? N1 C DT 278 ? ? 111.63 108.30 3.33 0.30 N 6 1 "O4'" C DA 279 ? ? "C1'" C DA 279 ? ? N9 C DA 279 ? ? 111.10 108.30 2.80 0.30 N 7 1 "O4'" C DA 280 ? ? "C1'" C DA 280 ? ? N9 C DA 280 ? ? 110.63 108.30 2.33 0.30 N 8 1 "O4'" C DC 283 ? ? "C1'" C DC 283 ? ? N1 C DC 283 ? ? 110.52 108.30 2.22 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 110 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 176.37 _pdbx_validate_torsion.psi -171.71 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BTX 'double helix' 3BTX 'b-form double helix' 3BTX 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 12 1_555 -0.351 -0.224 0.335 -6.927 -15.649 0.155 1 B_DG261:DC283_C B 261 ? C 283 ? 19 1 1 B DT 4 1_555 C DA 11 1_555 0.066 -0.123 0.259 -15.847 -9.651 5.382 2 B_DT262:DA282_C B 262 ? C 282 ? 20 1 1 B DA 5 1_555 C DT 10 1_555 0.181 -0.173 -0.019 -4.093 0.314 0.764 3 B_DA263:DT281_C B 263 ? C 281 ? 20 1 1 B DT 6 1_555 C DA 9 1_555 0.087 -0.232 -0.177 14.384 20.106 0.434 4 B_DT264:DA280_C B 264 ? C 280 ? 20 1 1 B DA 8 1_555 C DT 7 1_555 -0.159 -0.114 -0.203 -17.576 -6.422 9.444 5 B_DA266:DT278_C B 266 ? C 278 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.268 -0.154 -0.095 -1.770 -1.157 -3.176 6 B_DT267:DA277_C B 267 ? C 277 ? 20 1 1 B DT 10 1_555 C DA 5 1_555 -0.046 -0.237 -0.174 1.400 -21.034 -0.497 7 B_DT268:DA276_C B 268 ? C 276 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.398 -0.319 -0.199 -10.997 -8.752 -2.828 8 B_DG269:DC275_C B 269 ? C 275 ? 19 1 1 B DC 12 1_555 C DG 3 1_555 0.154 -0.187 0.256 -10.754 -7.948 -1.024 9 B_DC270:DG274_C B 270 ? C 274 ? 19 1 1 B DG 13 1_555 C DC 2 1_555 -0.214 -0.184 0.027 -1.711 -12.788 0.353 10 B_DG271:DC273_C B 271 ? C 273 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 12 1_555 B DT 4 1_555 C DA 11 1_555 -0.535 -1.242 3.556 3.005 -0.890 31.400 -2.104 1.590 3.524 -1.640 -5.536 31.552 1 BB_DG261DT262:DA282DC283_CC B 261 ? C 283 ? B 262 ? C 282 ? 1 B DT 4 1_555 C DA 11 1_555 B DA 5 1_555 C DT 10 1_555 0.217 -0.934 2.974 2.127 5.193 34.429 -2.261 -0.074 2.815 8.701 -3.564 34.870 2 BB_DT262DA263:DT281DA282_CC B 262 ? C 282 ? B 263 ? C 281 ? 1 B DA 5 1_555 C DT 10 1_555 B DT 6 1_555 C DA 9 1_555 -0.815 -0.760 3.177 3.417 6.262 17.160 -5.433 4.206 2.534 19.905 -10.862 18.574 3 BB_DA263DT264:DA280DT281_CC B 263 ? C 281 ? B 264 ? C 280 ? 1 B DA 8 1_555 C DT 7 1_555 B DT 9 1_555 C DA 6 1_555 -1.134 -0.650 2.997 2.355 7.862 24.158 -3.430 3.157 2.541 18.129 -5.431 25.494 4 BB_DA266DT267:DA277DT278_CC B 266 ? C 278 ? B 267 ? C 277 ? 1 B DT 9 1_555 C DA 6 1_555 B DT 10 1_555 C DA 5 1_555 -0.269 -0.041 3.245 2.925 -3.736 40.216 0.355 0.713 3.209 -5.411 -4.237 40.483 5 BB_DT267DT268:DA276DA277_CC B 267 ? C 277 ? B 268 ? C 276 ? 1 B DT 10 1_555 C DA 5 1_555 B DG 11 1_555 C DC 4 1_555 0.765 0.860 3.650 0.393 5.973 37.271 0.451 -1.125 3.746 9.272 -0.609 37.732 6 BB_DT268DG269:DC275DA276_CC B 268 ? C 276 ? B 269 ? C 275 ? 1 B DG 11 1_555 C DC 4 1_555 B DC 12 1_555 C DG 3 1_555 0.437 -0.308 3.287 -3.000 3.396 27.611 -1.437 -1.610 3.162 7.056 6.233 27.973 7 BB_DG269DC270:DG274DC275_CC B 269 ? C 275 ? B 270 ? C 274 ? 1 B DC 12 1_555 C DG 3 1_555 B DG 13 1_555 C DC 2 1_555 -0.199 -0.067 3.151 3.845 9.768 32.440 -1.606 0.928 2.966 16.939 -6.668 34.053 8 BB_DC270DG271:DC273DG274_CC B 270 ? C 274 ? B 271 ? C 273 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH #