data_3BU0 # _entry.id 3BU0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BU0 pdb_00003bu0 10.2210/pdb3bu0/pdb NDB PD1073 ? ? RCSB RCSB045954 ? ? WWPDB D_1000045954 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-05-21 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 4 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BU0 _pdbx_database_status.recvd_initial_deposition_date 2007-12-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FD8 'E. coli homolog' unspecified PDB 2IUW 'human homolog' unspecified PDB 3BTX . unspecified PDB 3BTY . unspecified PDB 3BTZ . unspecified PDB 3BUC . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, C.-G.' 1 'Yi, C.' 2 'He, C.' 3 # _citation.id primary _citation.title 'Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.' _citation.journal_abbrev Nature _citation.journal_volume 452 _citation.page_first 961 _citation.page_last 965 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18432238 _citation.pdbx_database_id_DOI 10.1038/nature06889 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, C.G.' 1 ? primary 'Yi, C.' 2 ? primary 'Duguid, E.M.' 3 ? primary 'Sullivan, C.T.' 4 ? primary 'Jian, X.' 5 ? primary 'Rice, P.A.' 6 ? primary 'He, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23064.352 1 1.14.11.- 'C67S, C165S, C192S, E175C' ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3') ; 4017.701 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3') ; 3943.613 1 ? ? ? ? 4 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 6 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; ;SWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(DA)(DT)(2YR)(DA)(DT)(DT)(DG)(DC)(DG)' CTGTATXATTGCG B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DA)(DA)(DT)(DA)(DA)(DT)(DA)(DC)(DA)' TCGCAATAATACA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '2-OXOGLUTARIC ACID' AKG 5 'MANGANESE (II) ION' MN 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TRP n 1 3 ARG n 1 4 HIS n 1 5 ILE n 1 6 ARG n 1 7 ALA n 1 8 GLU n 1 9 GLY n 1 10 LEU n 1 11 ASP n 1 12 SER n 1 13 SER n 1 14 TYR n 1 15 THR n 1 16 VAL n 1 17 LEU n 1 18 PHE n 1 19 GLY n 1 20 LYS n 1 21 ALA n 1 22 GLU n 1 23 ALA n 1 24 ASP n 1 25 GLU n 1 26 ILE n 1 27 PHE n 1 28 GLN n 1 29 GLU n 1 30 LEU n 1 31 GLU n 1 32 LYS n 1 33 GLU n 1 34 VAL n 1 35 GLU n 1 36 TYR n 1 37 PHE n 1 38 THR n 1 39 GLY n 1 40 ALA n 1 41 LEU n 1 42 ALA n 1 43 ARG n 1 44 VAL n 1 45 GLN n 1 46 VAL n 1 47 PHE n 1 48 GLY n 1 49 LYS n 1 50 TRP n 1 51 HIS n 1 52 SER n 1 53 VAL n 1 54 PRO n 1 55 ARG n 1 56 LYS n 1 57 GLN n 1 58 ALA n 1 59 THR n 1 60 TYR n 1 61 GLY n 1 62 ASP n 1 63 ALA n 1 64 GLY n 1 65 LEU n 1 66 THR n 1 67 TYR n 1 68 THR n 1 69 PHE n 1 70 SER n 1 71 GLY n 1 72 LEU n 1 73 THR n 1 74 LEU n 1 75 SER n 1 76 PRO n 1 77 LYS n 1 78 PRO n 1 79 TRP n 1 80 ILE n 1 81 PRO n 1 82 VAL n 1 83 LEU n 1 84 GLU n 1 85 ARG n 1 86 ILE n 1 87 ARG n 1 88 ASP n 1 89 HIS n 1 90 VAL n 1 91 SER n 1 92 GLY n 1 93 VAL n 1 94 THR n 1 95 GLY n 1 96 GLN n 1 97 THR n 1 98 PHE n 1 99 ASN n 1 100 PHE n 1 101 VAL n 1 102 LEU n 1 103 ILE n 1 104 ASN n 1 105 ARG n 1 106 TYR n 1 107 LYS n 1 108 ASP n 1 109 GLY n 1 110 SER n 1 111 ASP n 1 112 HIS n 1 113 ILE n 1 114 GLY n 1 115 GLU n 1 116 HIS n 1 117 ARG n 1 118 ASP n 1 119 ASP n 1 120 CYS n 1 121 ARG n 1 122 GLU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 GLY n 1 127 SER n 1 128 PRO n 1 129 ILE n 1 130 ALA n 1 131 SER n 1 132 VAL n 1 133 SER n 1 134 PHE n 1 135 GLY n 1 136 ALA n 1 137 SER n 1 138 ARG n 1 139 ASP n 1 140 PHE n 1 141 VAL n 1 142 PHE n 1 143 ARG n 1 144 HIS n 1 145 LYS n 1 146 ASP n 1 147 SER n 1 148 ARG n 1 149 GLY n 1 150 LYS n 1 151 SER n 1 152 PRO n 1 153 SER n 1 154 ARG n 1 155 ARG n 1 156 VAL n 1 157 ALA n 1 158 VAL n 1 159 VAL n 1 160 ARG n 1 161 LEU n 1 162 PRO n 1 163 LEU n 1 164 ALA n 1 165 HIS n 1 166 GLY n 1 167 SER n 1 168 LEU n 1 169 LEU n 1 170 MET n 1 171 MET n 1 172 ASN n 1 173 HIS n 1 174 PRO n 1 175 THR n 1 176 ASN n 1 177 THR n 1 178 HIS n 1 179 TRP n 1 180 TYR n 1 181 HIS n 1 182 SER n 1 183 LEU n 1 184 PRO n 1 185 VAL n 1 186 ARG n 1 187 LYS n 1 188 LYS n 1 189 VAL n 1 190 LEU n 1 191 ALA n 1 192 PRO n 1 193 ARG n 1 194 VAL n 1 195 ASN n 1 196 LEU n 1 197 THR n 1 198 PHE n 1 199 ARG n 1 200 LYS n 1 201 ILE n 1 202 LEU n 1 203 LEU n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 2YR n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DA n 3 7 DT n 3 8 DA n 3 9 DA n 3 10 DT n 3 11 DA n 3 12 DC n 3 13 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 12q24.11 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 56 56 SER SER A . n A 1 2 TRP 2 57 57 TRP TRP A . n A 1 3 ARG 3 58 58 ARG ARG A . n A 1 4 HIS 4 59 59 HIS HIS A . n A 1 5 ILE 5 60 60 ILE ILE A . n A 1 6 ARG 6 61 61 ARG ARG A . n A 1 7 ALA 7 62 62 ALA ALA A . n A 1 8 GLU 8 63 63 GLU GLU A . n A 1 9 GLY 9 64 64 GLY GLY A . n A 1 10 LEU 10 65 65 LEU LEU A . n A 1 11 ASP 11 66 66 ASP ASP A . n A 1 12 SER 12 67 67 SER SER A . n A 1 13 SER 13 68 68 SER SER A . n A 1 14 TYR 14 69 69 TYR TYR A . n A 1 15 THR 15 70 70 THR THR A . n A 1 16 VAL 16 71 71 VAL VAL A . n A 1 17 LEU 17 72 72 LEU LEU A . n A 1 18 PHE 18 73 73 PHE PHE A . n A 1 19 GLY 19 74 74 GLY GLY A . n A 1 20 LYS 20 75 75 LYS LYS A . n A 1 21 ALA 21 76 76 ALA ALA A . n A 1 22 GLU 22 77 77 GLU GLU A . n A 1 23 ALA 23 78 78 ALA ALA A . n A 1 24 ASP 24 79 79 ASP ASP A . n A 1 25 GLU 25 80 80 GLU GLU A . n A 1 26 ILE 26 81 81 ILE ILE A . n A 1 27 PHE 27 82 82 PHE PHE A . n A 1 28 GLN 28 83 83 GLN GLN A . n A 1 29 GLU 29 84 84 GLU GLU A . n A 1 30 LEU 30 85 85 LEU LEU A . n A 1 31 GLU 31 86 86 GLU GLU A . n A 1 32 LYS 32 87 87 LYS LYS A . n A 1 33 GLU 33 88 88 GLU GLU A . n A 1 34 VAL 34 89 89 VAL VAL A . n A 1 35 GLU 35 90 90 GLU GLU A . n A 1 36 TYR 36 91 91 TYR TYR A . n A 1 37 PHE 37 92 92 PHE PHE A . n A 1 38 THR 38 93 93 THR THR A . n A 1 39 GLY 39 94 94 GLY GLY A . n A 1 40 ALA 40 95 95 ALA ALA A . n A 1 41 LEU 41 96 96 LEU LEU A . n A 1 42 ALA 42 97 97 ALA ALA A . n A 1 43 ARG 43 98 98 ARG ARG A . n A 1 44 VAL 44 99 99 VAL VAL A . n A 1 45 GLN 45 100 100 GLN GLN A . n A 1 46 VAL 46 101 101 VAL VAL A . n A 1 47 PHE 47 102 102 PHE PHE A . n A 1 48 GLY 48 103 103 GLY GLY A . n A 1 49 LYS 49 104 104 LYS LYS A . n A 1 50 TRP 50 105 105 TRP TRP A . n A 1 51 HIS 51 106 106 HIS HIS A . n A 1 52 SER 52 107 107 SER SER A . n A 1 53 VAL 53 108 108 VAL VAL A . n A 1 54 PRO 54 109 109 PRO PRO A . n A 1 55 ARG 55 110 110 ARG ARG A . n A 1 56 LYS 56 111 111 LYS LYS A . n A 1 57 GLN 57 112 112 GLN GLN A . n A 1 58 ALA 58 113 113 ALA ALA A . n A 1 59 THR 59 114 114 THR THR A . n A 1 60 TYR 60 115 115 TYR TYR A . n A 1 61 GLY 61 116 116 GLY GLY A . n A 1 62 ASP 62 117 117 ASP ASP A . n A 1 63 ALA 63 118 118 ALA ALA A . n A 1 64 GLY 64 119 119 GLY GLY A . n A 1 65 LEU 65 120 120 LEU LEU A . n A 1 66 THR 66 121 121 THR THR A . n A 1 67 TYR 67 122 122 TYR TYR A . n A 1 68 THR 68 123 123 THR THR A . n A 1 69 PHE 69 124 124 PHE PHE A . n A 1 70 SER 70 125 125 SER SER A . n A 1 71 GLY 71 126 126 GLY GLY A . n A 1 72 LEU 72 127 127 LEU LEU A . n A 1 73 THR 73 128 128 THR THR A . n A 1 74 LEU 74 129 129 LEU LEU A . n A 1 75 SER 75 130 130 SER SER A . n A 1 76 PRO 76 131 131 PRO PRO A . n A 1 77 LYS 77 132 132 LYS LYS A . n A 1 78 PRO 78 133 133 PRO PRO A . n A 1 79 TRP 79 134 134 TRP TRP A . n A 1 80 ILE 80 135 135 ILE ILE A . n A 1 81 PRO 81 136 136 PRO PRO A . n A 1 82 VAL 82 137 137 VAL VAL A . n A 1 83 LEU 83 138 138 LEU LEU A . n A 1 84 GLU 84 139 139 GLU GLU A . n A 1 85 ARG 85 140 140 ARG ARG A . n A 1 86 ILE 86 141 141 ILE ILE A . n A 1 87 ARG 87 142 142 ARG ARG A . n A 1 88 ASP 88 143 143 ASP ASP A . n A 1 89 HIS 89 144 144 HIS HIS A . n A 1 90 VAL 90 145 145 VAL VAL A . n A 1 91 SER 91 146 146 SER SER A . n A 1 92 GLY 92 147 147 GLY GLY A . n A 1 93 VAL 93 148 148 VAL VAL A . n A 1 94 THR 94 149 149 THR THR A . n A 1 95 GLY 95 150 150 GLY GLY A . n A 1 96 GLN 96 151 151 GLN GLN A . n A 1 97 THR 97 152 152 THR THR A . n A 1 98 PHE 98 153 153 PHE PHE A . n A 1 99 ASN 99 154 154 ASN ASN A . n A 1 100 PHE 100 155 155 PHE PHE A . n A 1 101 VAL 101 156 156 VAL VAL A . n A 1 102 LEU 102 157 157 LEU LEU A . n A 1 103 ILE 103 158 158 ILE ILE A . n A 1 104 ASN 104 159 159 ASN ASN A . n A 1 105 ARG 105 160 160 ARG ARG A . n A 1 106 TYR 106 161 161 TYR TYR A . n A 1 107 LYS 107 162 162 LYS LYS A . n A 1 108 ASP 108 163 163 ASP ASP A . n A 1 109 GLY 109 164 164 GLY GLY A . n A 1 110 SER 110 165 165 SER SER A . n A 1 111 ASP 111 166 166 ASP ASP A . n A 1 112 HIS 112 167 167 HIS HIS A . n A 1 113 ILE 113 168 168 ILE ILE A . n A 1 114 GLY 114 169 169 GLY GLY A . n A 1 115 GLU 115 170 170 GLU GLU A . n A 1 116 HIS 116 171 171 HIS HIS A . n A 1 117 ARG 117 172 172 ARG ARG A . n A 1 118 ASP 118 173 173 ASP ASP A . n A 1 119 ASP 119 174 174 ASP ASP A . n A 1 120 CYS 120 175 175 CYS CYS A . n A 1 121 ARG 121 176 176 ARG ARG A . n A 1 122 GLU 122 177 177 GLU GLU A . n A 1 123 LEU 123 178 178 LEU LEU A . n A 1 124 ALA 124 179 179 ALA ALA A . n A 1 125 PRO 125 180 180 PRO PRO A . n A 1 126 GLY 126 181 181 GLY GLY A . n A 1 127 SER 127 182 182 SER SER A . n A 1 128 PRO 128 183 183 PRO PRO A . n A 1 129 ILE 129 184 184 ILE ILE A . n A 1 130 ALA 130 185 185 ALA ALA A . n A 1 131 SER 131 186 186 SER SER A . n A 1 132 VAL 132 187 187 VAL VAL A . n A 1 133 SER 133 188 188 SER SER A . n A 1 134 PHE 134 189 189 PHE PHE A . n A 1 135 GLY 135 190 190 GLY GLY A . n A 1 136 ALA 136 191 191 ALA ALA A . n A 1 137 SER 137 192 192 SER SER A . n A 1 138 ARG 138 193 193 ARG ARG A . n A 1 139 ASP 139 194 194 ASP ASP A . n A 1 140 PHE 140 195 195 PHE PHE A . n A 1 141 VAL 141 196 196 VAL VAL A . n A 1 142 PHE 142 197 197 PHE PHE A . n A 1 143 ARG 143 198 198 ARG ARG A . n A 1 144 HIS 144 199 199 HIS HIS A . n A 1 145 LYS 145 200 200 LYS LYS A . n A 1 146 ASP 146 201 201 ASP ASP A . n A 1 147 SER 147 202 202 SER SER A . n A 1 148 ARG 148 203 203 ARG ARG A . n A 1 149 GLY 149 204 204 GLY GLY A . n A 1 150 LYS 150 205 205 LYS LYS A . n A 1 151 SER 151 206 206 SER SER A . n A 1 152 PRO 152 207 207 PRO PRO A . n A 1 153 SER 153 208 208 SER SER A . n A 1 154 ARG 154 209 209 ARG ARG A . n A 1 155 ARG 155 210 210 ARG ARG A . n A 1 156 VAL 156 211 211 VAL VAL A . n A 1 157 ALA 157 212 212 ALA ALA A . n A 1 158 VAL 158 213 213 VAL VAL A . n A 1 159 VAL 159 214 214 VAL VAL A . n A 1 160 ARG 160 215 215 ARG ARG A . n A 1 161 LEU 161 216 216 LEU LEU A . n A 1 162 PRO 162 217 217 PRO PRO A . n A 1 163 LEU 163 218 218 LEU LEU A . n A 1 164 ALA 164 219 219 ALA ALA A . n A 1 165 HIS 165 220 220 HIS HIS A . n A 1 166 GLY 166 221 221 GLY GLY A . n A 1 167 SER 167 222 222 SER SER A . n A 1 168 LEU 168 223 223 LEU LEU A . n A 1 169 LEU 169 224 224 LEU LEU A . n A 1 170 MET 170 225 225 MET MET A . n A 1 171 MET 171 226 226 MET MET A . n A 1 172 ASN 172 227 227 ASN ASN A . n A 1 173 HIS 173 228 228 HIS HIS A . n A 1 174 PRO 174 229 229 PRO PRO A . n A 1 175 THR 175 230 230 THR THR A . n A 1 176 ASN 176 231 231 ASN ASN A . n A 1 177 THR 177 232 232 THR THR A . n A 1 178 HIS 178 233 233 HIS HIS A . n A 1 179 TRP 179 234 234 TRP TRP A . n A 1 180 TYR 180 235 235 TYR TYR A . n A 1 181 HIS 181 236 236 HIS HIS A . n A 1 182 SER 182 237 237 SER SER A . n A 1 183 LEU 183 238 238 LEU LEU A . n A 1 184 PRO 184 239 239 PRO PRO A . n A 1 185 VAL 185 240 240 VAL VAL A . n A 1 186 ARG 186 241 241 ARG ARG A . n A 1 187 LYS 187 242 242 LYS LYS A . n A 1 188 LYS 188 243 243 LYS LYS A . n A 1 189 VAL 189 244 244 VAL VAL A . n A 1 190 LEU 190 245 245 LEU LEU A . n A 1 191 ALA 191 246 246 ALA ALA A . n A 1 192 PRO 192 247 247 PRO PRO A . n A 1 193 ARG 193 248 248 ARG ARG A . n A 1 194 VAL 194 249 249 VAL VAL A . n A 1 195 ASN 195 250 250 ASN ASN A . n A 1 196 LEU 196 251 251 LEU LEU A . n A 1 197 THR 197 252 252 THR THR A . n A 1 198 PHE 198 253 253 PHE PHE A . n A 1 199 ARG 199 254 254 ARG ARG A . n A 1 200 LYS 200 255 255 LYS LYS A . n A 1 201 ILE 201 256 256 ILE ILE A . n A 1 202 LEU 202 257 257 LEU LEU A . n A 1 203 LEU 203 258 258 LEU LEU A . n B 2 1 DC 1 1 1 DC C B . n B 2 2 DT 2 2 2 DT T B . n B 2 3 DG 3 3 3 DG G B . n B 2 4 DT 4 4 4 DT T B . n B 2 5 DA 5 5 5 DA A B . n B 2 6 DT 6 6 6 DT T B . n B 2 7 2YR 7 7 7 2YR C B . n B 2 8 DA 8 8 8 DA A B . n B 2 9 DT 9 9 9 DT T B . n B 2 10 DT 10 10 10 DT T B . n B 2 11 DG 11 11 11 DG G B . n B 2 12 DC 12 12 12 DC C B . n B 2 13 DG 13 13 13 DG G B . n C 3 1 DT 1 1 1 DT T C . n C 3 2 DC 2 2 2 DC C C . n C 3 3 DG 3 3 3 DG G C . n C 3 4 DC 4 4 4 DC C C . n C 3 5 DA 5 5 5 DA A C . n C 3 6 DA 6 6 6 DA A C . n C 3 7 DT 7 7 7 DT T C . n C 3 8 DA 8 8 8 DA A C . n C 3 9 DA 9 9 9 DA A C . n C 3 10 DT 10 10 10 DT T C . n C 3 11 DA 11 11 11 DA A C . n C 3 12 DC 12 12 12 DC C C . n C 3 13 DA 13 13 13 DA A C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AKG 1 301 1 AKG AKG A . E 5 MN 1 302 1 MN MN A . F 6 HOH 1 401 1 HOH HOH A . F 6 HOH 2 402 2 HOH HOH A . F 6 HOH 3 403 3 HOH HOH A . F 6 HOH 4 404 4 HOH HOH A . F 6 HOH 5 405 6 HOH HOH A . F 6 HOH 6 406 7 HOH HOH A . F 6 HOH 7 407 9 HOH HOH A . F 6 HOH 8 408 12 HOH HOH A . F 6 HOH 9 409 13 HOH HOH A . F 6 HOH 10 410 14 HOH HOH A . F 6 HOH 11 411 15 HOH HOH A . F 6 HOH 12 412 16 HOH HOH A . F 6 HOH 13 413 17 HOH HOH A . F 6 HOH 14 414 18 HOH HOH A . F 6 HOH 15 415 19 HOH HOH A . F 6 HOH 16 416 20 HOH HOH A . F 6 HOH 17 417 21 HOH HOH A . F 6 HOH 18 418 22 HOH HOH A . F 6 HOH 19 419 23 HOH HOH A . F 6 HOH 20 420 24 HOH HOH A . F 6 HOH 21 421 25 HOH HOH A . F 6 HOH 22 422 26 HOH HOH A . F 6 HOH 23 423 27 HOH HOH A . F 6 HOH 24 424 28 HOH HOH A . F 6 HOH 25 425 29 HOH HOH A . F 6 HOH 26 426 30 HOH HOH A . F 6 HOH 27 427 32 HOH HOH A . F 6 HOH 28 428 33 HOH HOH A . F 6 HOH 29 429 34 HOH HOH A . F 6 HOH 30 430 35 HOH HOH A . F 6 HOH 31 431 36 HOH HOH A . F 6 HOH 32 432 37 HOH HOH A . F 6 HOH 33 433 38 HOH HOH A . F 6 HOH 34 434 42 HOH HOH A . F 6 HOH 35 435 43 HOH HOH A . F 6 HOH 36 436 44 HOH HOH A . F 6 HOH 37 437 46 HOH HOH A . F 6 HOH 38 438 47 HOH HOH A . F 6 HOH 39 439 48 HOH HOH A . F 6 HOH 40 440 49 HOH HOH A . F 6 HOH 41 441 50 HOH HOH A . F 6 HOH 42 442 51 HOH HOH A . F 6 HOH 43 443 52 HOH HOH A . F 6 HOH 44 444 53 HOH HOH A . F 6 HOH 45 445 54 HOH HOH A . F 6 HOH 46 446 56 HOH HOH A . F 6 HOH 47 447 57 HOH HOH A . F 6 HOH 48 448 58 HOH HOH A . F 6 HOH 49 449 59 HOH HOH A . F 6 HOH 50 450 60 HOH HOH A . F 6 HOH 51 451 61 HOH HOH A . F 6 HOH 52 452 62 HOH HOH A . F 6 HOH 53 453 63 HOH HOH A . F 6 HOH 54 454 64 HOH HOH A . F 6 HOH 55 455 65 HOH HOH A . F 6 HOH 56 456 66 HOH HOH A . F 6 HOH 57 457 67 HOH HOH A . F 6 HOH 58 458 68 HOH HOH A . F 6 HOH 59 459 69 HOH HOH A . F 6 HOH 60 460 70 HOH HOH A . F 6 HOH 61 461 71 HOH HOH A . F 6 HOH 62 462 72 HOH HOH A . F 6 HOH 63 463 73 HOH HOH A . F 6 HOH 64 464 74 HOH HOH A . F 6 HOH 65 465 75 HOH HOH A . F 6 HOH 66 466 76 HOH HOH A . F 6 HOH 67 467 77 HOH HOH A . F 6 HOH 68 468 78 HOH HOH A . F 6 HOH 69 469 79 HOH HOH A . F 6 HOH 70 470 82 HOH HOH A . F 6 HOH 71 471 83 HOH HOH A . F 6 HOH 72 472 86 HOH HOH A . F 6 HOH 73 473 87 HOH HOH A . F 6 HOH 74 474 88 HOH HOH A . G 6 HOH 1 101 8 HOH HOH B . G 6 HOH 2 102 10 HOH HOH B . G 6 HOH 3 103 40 HOH HOH B . G 6 HOH 4 104 41 HOH HOH B . G 6 HOH 5 105 45 HOH HOH B . G 6 HOH 6 106 80 HOH HOH B . G 6 HOH 7 107 81 HOH HOH B . G 6 HOH 8 108 84 HOH HOH B . G 6 HOH 9 109 90 HOH HOH B . H 6 HOH 1 101 5 HOH HOH C . H 6 HOH 2 102 11 HOH HOH C . H 6 HOH 3 103 31 HOH HOH C . H 6 HOH 4 104 39 HOH HOH C . H 6 HOH 5 105 55 HOH HOH C . H 6 HOH 6 106 85 HOH HOH C . H 6 HOH 7 107 89 HOH HOH C . H 6 HOH 8 108 91 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 PHASES phasing . ? 4 # _cell.entry_id 3BU0 _cell.length_a 77.591 _cell.length_b 77.591 _cell.length_c 227.051 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BU0 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3BU0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.18 _exptl_crystal.density_percent_sol 61.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.1 _exptl_crystal_grow.pdbx_details ;16% PEG 4000, 0.1M sodium chloride, 0.05M magnesium chloride, 0.1M cacodylate, 0.001M MnCl2, 0.002M 2-ketoglutarate, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 'sodium chloride' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 cacodylate ? ? ? 1 5 1 MnCl2 ? ? ? 1 6 1 2-ketoglutarate ? ? ? 1 7 2 'PEG 4000' ? ? ? 1 8 2 'sodium chloride' ? ? ? 1 9 2 'magnesium chloride' ? ? ? 1 10 2 cacodylate ? ? ? 1 11 2 MnCl2 ? ? ? 1 12 2 2-ketoglutarate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3BU0 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 33.2 _reflns.number_all 14823 _reflns.number_obs 14823 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.498 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 8.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 690 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BU0 _refine.ls_number_reflns_obs 13964 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.74 _refine.ls_R_factor_obs 0.23305 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23029 _refine.ls_R_factor_R_free 0.28394 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 749 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.888 _refine.B_iso_mean 36.953 _refine.aniso_B[1][1] -1.33 _refine.aniso_B[2][2] -1.33 _refine.aniso_B[3][3] 2.00 _refine.aniso_B[1][2] -0.67 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.397 _refine.pdbx_overall_ESU_R_Free 0.291 _refine.overall_SU_ML 0.199 _refine.overall_SU_B 16.744 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1631 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 2260 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 2275 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.192 2.246 ? 3186 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.369 5.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.203 21.410 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.548 15.000 ? 278 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.335 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 345 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1569 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.177 0.200 ? 886 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.300 0.200 ? 1444 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.120 0.200 ? 128 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.166 0.200 ? 32 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.130 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.351 1.500 ? 1039 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.639 2.000 ? 1636 'X-RAY DIFFRACTION' ? r_scbond_it 0.916 3.000 ? 1570 'X-RAY DIFFRACTION' ? r_scangle_it 1.517 4.500 ? 1550 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 973 _refine_ls_shell.R_factor_R_work 0.406 _refine_ls_shell.percent_reflns_obs 99.81 _refine_ls_shell.R_factor_R_free 0.522 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3BU0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3BU0 _struct.title 'crystal structure of human ABH2 cross-linked to dsDNA with cofactors' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BU0 _struct_keywords.pdbx_keywords Oxidoreductase/DNA _struct_keywords.text ;protein/DNA interaction, human dioxygenase, DNA repair, cross-link, DNA damage, Iron, Metal-binding, Nucleus, Oxidoreductase, Oxidoreductase-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; 56 ? 2 PDB 3BU0 3BU0 2 CTGTATCATTGCG ? ? 3 PDB 3BU0 3BU0 3 TCGCAATAATACA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BU0 A 1 ? 203 ? Q6NS38 56 ? 258 ? 56 258 2 2 3BU0 B 1 ? 13 ? 3BU0 1 ? 13 ? 1 13 3 3 3BU0 C 1 ? 13 ? 3BU0 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BU0 SER A 12 ? UNP Q6NS38 CYS 67 'engineered mutation' 67 1 1 3BU0 SER A 110 ? UNP Q6NS38 CYS 165 'engineered mutation' 165 2 1 3BU0 CYS A 120 ? UNP Q6NS38 GLU 175 'engineered mutation' 175 3 1 3BU0 SER A 137 ? UNP Q6NS38 CYS 192 'engineered mutation' 192 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4440 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 19 ? VAL A 34 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 THR A 38 ? LEU A 41 ? THR A 93 LEU A 96 5 ? 4 HELX_P HELX_P3 3 ILE A 80 ? GLY A 95 ? ILE A 135 GLY A 150 1 ? 16 HELX_P HELX_P4 4 ASP A 146 ? ARG A 148 ? ASP A 201 ARG A 203 5 ? 3 HELX_P HELX_P5 5 PRO A 174 ? HIS A 178 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 120 SG ? ? ? 1_555 B 2YR 7 S ? ? A CYS 175 B 2YR 7 1_555 ? ? ? ? ? ? ? 2.017 ? ? covale2 covale both ? B DT 6 "O3'" ? ? ? 1_555 B 2YR 7 P ? ? B DT 6 B 2YR 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale both ? B 2YR 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B 2YR 7 B DA 8 1_555 ? ? ? ? ? ? ? 1.587 ? ? metalc1 metalc ? ? A HIS 116 NE2 ? ? ? 1_555 E MN . MN ? ? A HIS 171 A MN 302 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc2 metalc ? ? A ASP 118 OD1 ? ? ? 1_555 E MN . MN ? ? A ASP 173 A MN 302 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc3 metalc ? ? A HIS 181 NE2 ? ? ? 1_555 E MN . MN ? ? A HIS 236 A MN 302 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc4 metalc ? ? D AKG . O5 ? ? ? 1_555 E MN . MN ? ? A AKG 301 A MN 302 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc5 metalc ? ? D AKG . O2 ? ? ? 1_555 E MN . MN ? ? A AKG 301 A MN 302 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc6 metalc ? ? E MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 302 A HOH 451 1_555 ? ? ? ? ? ? ? 2.124 ? ? hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 5 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 5 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 6 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 6 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 12 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 12 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 12 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 116 ? A HIS 171 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 OD1 ? A ASP 118 ? A ASP 173 ? 1_555 83.1 ? 2 NE2 ? A HIS 116 ? A HIS 171 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 NE2 ? A HIS 181 ? A HIS 236 ? 1_555 89.1 ? 3 OD1 ? A ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 NE2 ? A HIS 181 ? A HIS 236 ? 1_555 98.8 ? 4 NE2 ? A HIS 116 ? A HIS 171 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O5 ? D AKG . ? A AKG 301 ? 1_555 101.5 ? 5 OD1 ? A ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O5 ? D AKG . ? A AKG 301 ? 1_555 171.8 ? 6 NE2 ? A HIS 181 ? A HIS 236 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O5 ? D AKG . ? A AKG 301 ? 1_555 88.1 ? 7 NE2 ? A HIS 116 ? A HIS 171 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O2 ? D AKG . ? A AKG 301 ? 1_555 80.6 ? 8 OD1 ? A ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O2 ? D AKG . ? A AKG 301 ? 1_555 99.4 ? 9 NE2 ? A HIS 181 ? A HIS 236 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O2 ? D AKG . ? A AKG 301 ? 1_555 157.9 ? 10 O5 ? D AKG . ? A AKG 301 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O2 ? D AKG . ? A AKG 301 ? 1_555 75.0 ? 11 NE2 ? A HIS 116 ? A HIS 171 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O ? F HOH . ? A HOH 451 ? 1_555 168.8 ? 12 OD1 ? A ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O ? F HOH . ? A HOH 451 ? 1_555 101.0 ? 13 NE2 ? A HIS 181 ? A HIS 236 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O ? F HOH . ? A HOH 451 ? 1_555 100.4 ? 14 O5 ? D AKG . ? A AKG 301 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O ? F HOH . ? A HOH 451 ? 1_555 73.3 ? 15 O2 ? D AKG . ? A AKG 301 ? 1_555 MN ? E MN . ? A MN 302 ? 1_555 O ? F HOH . ? A HOH 451 ? 1_555 88.4 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id 2YR _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 7 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 120 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id 2YR _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 7 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 175 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom S _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id 2YR _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 173 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 174 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.96 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 3 ? ALA A 7 ? ARG A 58 ALA A 62 A 2 LEU A 10 ? VAL A 16 ? LEU A 65 VAL A 71 A 3 SER A 167 ? MET A 171 ? SER A 222 MET A 226 A 4 ILE A 129 ? GLY A 135 ? ILE A 184 GLY A 190 A 5 ARG A 193 ? ARG A 199 ? ARG A 248 ARG A 254 A 6 PHE A 100 ? TYR A 106 ? PHE A 155 TYR A 161 A 7 LYS A 56 ? GLY A 61 ? LYS A 111 GLY A 116 B 1 ARG A 43 ? VAL A 46 ? ARG A 98 VAL A 101 B 2 LYS A 49 ? SER A 52 ? LYS A 104 SER A 107 C 1 TYR A 67 ? PHE A 69 ? TYR A 122 PHE A 124 C 2 LEU A 72 ? LEU A 74 ? LEU A 127 LEU A 129 D 1 ILE A 113 ? HIS A 116 ? ILE A 168 HIS A 171 D 2 TRP A 179 ? LEU A 183 ? TRP A 234 LEU A 238 D 3 ARG A 138 ? HIS A 144 ? ARG A 193 HIS A 199 D 4 VAL A 159 ? LEU A 163 ? VAL A 214 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 60 O SER A 12 ? O SER A 67 A 2 3 N THR A 15 ? N THR A 70 O LEU A 168 ? O LEU A 223 A 3 4 O LEU A 169 ? O LEU A 224 N SER A 131 ? N SER A 186 A 4 5 N VAL A 132 ? N VAL A 187 O LEU A 196 ? O LEU A 251 A 5 6 O ASN A 195 ? O ASN A 250 N ASN A 104 ? N ASN A 159 A 6 7 O ILE A 103 ? O ILE A 158 N ALA A 58 ? N ALA A 113 B 1 2 N VAL A 44 ? N VAL A 99 O HIS A 51 ? O HIS A 106 C 1 2 N PHE A 69 ? N PHE A 124 O LEU A 72 ? O LEU A 127 D 1 2 N HIS A 116 ? N HIS A 171 O HIS A 181 ? O HIS A 236 D 2 3 O TYR A 180 ? O TYR A 235 N ARG A 143 ? N ARG A 198 D 3 4 N PHE A 140 ? N PHE A 195 O LEU A 161 ? O LEU A 216 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AKG 301 ? 13 'BINDING SITE FOR RESIDUE AKG A 301' AC2 Software A MN 302 ? 5 'BINDING SITE FOR RESIDUE MN A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LEU A 102 ? LEU A 157 . ? 1_555 ? 2 AC1 13 ASN A 104 ? ASN A 159 . ? 1_555 ? 3 AC1 13 TYR A 106 ? TYR A 161 . ? 1_555 ? 4 AC1 13 ILE A 113 ? ILE A 168 . ? 1_555 ? 5 AC1 13 HIS A 116 ? HIS A 171 . ? 1_555 ? 6 AC1 13 ASP A 118 ? ASP A 173 . ? 1_555 ? 7 AC1 13 HIS A 181 ? HIS A 236 . ? 1_555 ? 8 AC1 13 ARG A 193 ? ARG A 248 . ? 1_555 ? 9 AC1 13 ASN A 195 ? ASN A 250 . ? 1_555 ? 10 AC1 13 ARG A 199 ? ARG A 254 . ? 1_555 ? 11 AC1 13 MN E . ? MN A 302 . ? 1_555 ? 12 AC1 13 HOH F . ? HOH A 405 . ? 1_555 ? 13 AC1 13 HOH F . ? HOH A 451 . ? 1_555 ? 14 AC2 5 HIS A 116 ? HIS A 171 . ? 1_555 ? 15 AC2 5 ASP A 118 ? ASP A 173 . ? 1_555 ? 16 AC2 5 HIS A 181 ? HIS A 236 . ? 1_555 ? 17 AC2 5 AKG D . ? AKG A 301 . ? 1_555 ? 18 AC2 5 HOH F . ? HOH A 451 . ? 1_555 ? # _pdbx_entry_details.entry_id 3BU0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.23 108.30 1.93 0.30 N 2 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 111.57 108.30 3.27 0.30 N 3 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.10 108.30 1.80 0.30 N 4 1 "O4'" C DC 4 ? ? "C1'" C DC 4 ? ? N1 C DC 4 ? ? 112.03 108.30 3.73 0.30 N 5 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 110.62 108.30 2.32 0.30 N 6 1 "O4'" C DA 9 ? ? "C1'" C DA 9 ? ? N9 C DA 9 ? ? 110.55 108.30 2.25 0.30 N 7 1 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? N1 C DT 10 ? ? 110.94 108.30 2.64 0.30 N 8 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 111.67 108.30 3.37 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 110 ? ? 178.40 -176.35 2 1 LYS A 205 ? ? -40.61 -70.64 3 1 ARG A 210 ? ? -109.09 45.77 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 109.7990 -2.6565 -192.6304 -0.0790 -0.1376 -0.0130 -0.0353 0.1048 -0.0138 5.8551 3.4783 2.0433 -1.5350 -0.0684 -0.4345 0.0467 0.3667 -0.1712 -0.5766 0.1256 -0.1760 0.1646 0.0256 -0.1723 'X-RAY DIFFRACTION' 2 ? refined 87.4783 2.2602 -193.0706 0.1001 0.0077 -0.0275 0.0446 0.0425 0.1739 3.8517 1.3467 0.5669 2.2691 1.1983 0.6619 -0.1101 -0.2949 -0.1680 -0.1535 0.1735 0.2526 0.0405 -0.4227 -0.0634 'X-RAY DIFFRACTION' 3 ? refined 89.6149 3.8984 -192.4189 0.0009 0.1170 -0.0539 -0.0984 -0.0127 0.0927 1.7720 2.7943 19.2565 -1.1312 2.0608 -7.1281 -0.1298 -0.2803 -0.0155 -0.1022 0.4554 0.3009 -0.5108 -0.6997 -0.3256 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 56 C 1 A 258 C 203 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 A 1 B 13 A 13 ? 'X-RAY DIFFRACTION' ? 3 3 C 1 B 1 C 13 B 13 ? 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2YR P P N N 1 2YR OP1 O N N 2 2YR OP2 O N N 3 2YR "O5'" O N N 4 2YR "C5'" C N N 5 2YR "C4'" C N R 6 2YR "O4'" O N N 7 2YR "C3'" C N S 8 2YR "O3'" O N N 9 2YR "C2'" C N N 10 2YR "C1'" C N R 11 2YR N1 N N N 12 2YR C2 C N N 13 2YR O2 O N N 14 2YR N3 N N N 15 2YR C4 C N N 16 2YR N4 N N N 17 2YR C5 C N N 18 2YR C6 C N N 19 2YR S S N N 20 2YR C8 C N N 21 2YR C9 C N N 22 2YR H2 H N N 23 2YR H3 H N N 24 2YR H4 H N N 25 2YR H5 H N N 26 2YR H6 H N N 27 2YR H7 H N N 28 2YR H8 H N N 29 2YR H9 H N N 30 2YR H10 H N N 31 2YR H11 H N N 32 2YR H12 H N N 33 2YR H13 H N N 34 2YR H14 H N N 35 2YR H15 H N N 36 2YR H16 H N N 37 2YR H17 H N N 38 2YR H18 H N N 39 2YR OP3 O N N 40 2YR H20 H N N 41 AKG C1 C N N 42 AKG O1 O N N 43 AKG O2 O N N 44 AKG C2 C N N 45 AKG O5 O N N 46 AKG C3 C N N 47 AKG C4 C N N 48 AKG C5 C N N 49 AKG O3 O N N 50 AKG O4 O N N 51 AKG HO2 H N N 52 AKG H31 H N N 53 AKG H32 H N N 54 AKG H41 H N N 55 AKG H42 H N N 56 AKG HO4 H N N 57 ALA N N N N 58 ALA CA C N S 59 ALA C C N N 60 ALA O O N N 61 ALA CB C N N 62 ALA OXT O N N 63 ALA H H N N 64 ALA H2 H N N 65 ALA HA H N N 66 ALA HB1 H N N 67 ALA HB2 H N N 68 ALA HB3 H N N 69 ALA HXT H N N 70 ARG N N N N 71 ARG CA C N S 72 ARG C C N N 73 ARG O O N N 74 ARG CB C N N 75 ARG CG C N N 76 ARG CD C N N 77 ARG NE N N N 78 ARG CZ C N N 79 ARG NH1 N N N 80 ARG NH2 N N N 81 ARG OXT O N N 82 ARG H H N N 83 ARG H2 H N N 84 ARG HA H N N 85 ARG HB2 H N N 86 ARG HB3 H N N 87 ARG HG2 H N N 88 ARG HG3 H N N 89 ARG HD2 H N N 90 ARG HD3 H N N 91 ARG HE H N N 92 ARG HH11 H N N 93 ARG HH12 H N N 94 ARG HH21 H N N 95 ARG HH22 H N N 96 ARG HXT H N N 97 ASN N N N N 98 ASN CA C N S 99 ASN C C N N 100 ASN O O N N 101 ASN CB C N N 102 ASN CG C N N 103 ASN OD1 O N N 104 ASN ND2 N N N 105 ASN OXT O N N 106 ASN H H N N 107 ASN H2 H N N 108 ASN HA H N N 109 ASN HB2 H N N 110 ASN HB3 H N N 111 ASN HD21 H N N 112 ASN HD22 H N N 113 ASN HXT H N N 114 ASP N N N N 115 ASP CA C N S 116 ASP C C N N 117 ASP O O N N 118 ASP CB C N N 119 ASP CG C N N 120 ASP OD1 O N N 121 ASP OD2 O N N 122 ASP OXT O N N 123 ASP H H N N 124 ASP H2 H N N 125 ASP HA H N N 126 ASP HB2 H N N 127 ASP HB3 H N N 128 ASP HD2 H N N 129 ASP HXT H N N 130 CYS N N N N 131 CYS CA C N R 132 CYS C C N N 133 CYS O O N N 134 CYS CB C N N 135 CYS SG S N N 136 CYS OXT O N N 137 CYS H H N N 138 CYS H2 H N N 139 CYS HA H N N 140 CYS HB2 H N N 141 CYS HB3 H N N 142 CYS HG H N N 143 CYS HXT H N N 144 DA OP3 O N N 145 DA P P N N 146 DA OP1 O N N 147 DA OP2 O N N 148 DA "O5'" O N N 149 DA "C5'" C N N 150 DA "C4'" C N R 151 DA "O4'" O N N 152 DA "C3'" C N S 153 DA "O3'" O N N 154 DA "C2'" C N N 155 DA "C1'" C N R 156 DA N9 N Y N 157 DA C8 C Y N 158 DA N7 N Y N 159 DA C5 C Y N 160 DA C6 C Y N 161 DA N6 N N N 162 DA N1 N Y N 163 DA C2 C Y N 164 DA N3 N Y N 165 DA C4 C Y N 166 DA HOP3 H N N 167 DA HOP2 H N N 168 DA "H5'" H N N 169 DA "H5''" H N N 170 DA "H4'" H N N 171 DA "H3'" H N N 172 DA "HO3'" H N N 173 DA "H2'" H N N 174 DA "H2''" H N N 175 DA "H1'" H N N 176 DA H8 H N N 177 DA H61 H N N 178 DA H62 H N N 179 DA H2 H N N 180 DC OP3 O N N 181 DC P P N N 182 DC OP1 O N N 183 DC OP2 O N N 184 DC "O5'" O N N 185 DC "C5'" C N N 186 DC "C4'" C N R 187 DC "O4'" O N N 188 DC "C3'" C N S 189 DC "O3'" O N N 190 DC "C2'" C N N 191 DC "C1'" C N R 192 DC N1 N N N 193 DC C2 C N N 194 DC O2 O N N 195 DC N3 N N N 196 DC C4 C N N 197 DC N4 N N N 198 DC C5 C N N 199 DC C6 C N N 200 DC HOP3 H N N 201 DC HOP2 H N N 202 DC "H5'" H N N 203 DC "H5''" H N N 204 DC "H4'" H N N 205 DC "H3'" H N N 206 DC "HO3'" H N N 207 DC "H2'" H N N 208 DC "H2''" H N N 209 DC "H1'" H N N 210 DC H41 H N N 211 DC H42 H N N 212 DC H5 H N N 213 DC H6 H N N 214 DG OP3 O N N 215 DG P P N N 216 DG OP1 O N N 217 DG OP2 O N N 218 DG "O5'" O N N 219 DG "C5'" C N N 220 DG "C4'" C N R 221 DG "O4'" O N N 222 DG "C3'" C N S 223 DG "O3'" O N N 224 DG "C2'" C N N 225 DG "C1'" C N R 226 DG N9 N Y N 227 DG C8 C Y N 228 DG N7 N Y N 229 DG C5 C Y N 230 DG C6 C N N 231 DG O6 O N N 232 DG N1 N N N 233 DG C2 C N N 234 DG N2 N N N 235 DG N3 N N N 236 DG C4 C Y N 237 DG HOP3 H N N 238 DG HOP2 H N N 239 DG "H5'" H N N 240 DG "H5''" H N N 241 DG "H4'" H N N 242 DG "H3'" H N N 243 DG "HO3'" H N N 244 DG "H2'" H N N 245 DG "H2''" H N N 246 DG "H1'" H N N 247 DG H8 H N N 248 DG H1 H N N 249 DG H21 H N N 250 DG H22 H N N 251 DT OP3 O N N 252 DT P P N N 253 DT OP1 O N N 254 DT OP2 O N N 255 DT "O5'" O N N 256 DT "C5'" C N N 257 DT "C4'" C N R 258 DT "O4'" O N N 259 DT "C3'" C N S 260 DT "O3'" O N N 261 DT "C2'" C N N 262 DT "C1'" C N R 263 DT N1 N N N 264 DT C2 C N N 265 DT O2 O N N 266 DT N3 N N N 267 DT C4 C N N 268 DT O4 O N N 269 DT C5 C N N 270 DT C7 C N N 271 DT C6 C N N 272 DT HOP3 H N N 273 DT HOP2 H N N 274 DT "H5'" H N N 275 DT "H5''" H N N 276 DT "H4'" H N N 277 DT "H3'" H N N 278 DT "HO3'" H N N 279 DT "H2'" H N N 280 DT "H2''" H N N 281 DT "H1'" H N N 282 DT H3 H N N 283 DT H71 H N N 284 DT H72 H N N 285 DT H73 H N N 286 DT H6 H N N 287 GLN N N N N 288 GLN CA C N S 289 GLN C C N N 290 GLN O O N N 291 GLN CB C N N 292 GLN CG C N N 293 GLN CD C N N 294 GLN OE1 O N N 295 GLN NE2 N N N 296 GLN OXT O N N 297 GLN H H N N 298 GLN H2 H N N 299 GLN HA H N N 300 GLN HB2 H N N 301 GLN HB3 H N N 302 GLN HG2 H N N 303 GLN HG3 H N N 304 GLN HE21 H N N 305 GLN HE22 H N N 306 GLN HXT H N N 307 GLU N N N N 308 GLU CA C N S 309 GLU C C N N 310 GLU O O N N 311 GLU CB C N N 312 GLU CG C N N 313 GLU CD C N N 314 GLU OE1 O N N 315 GLU OE2 O N N 316 GLU OXT O N N 317 GLU H H N N 318 GLU H2 H N N 319 GLU HA H N N 320 GLU HB2 H N N 321 GLU HB3 H N N 322 GLU HG2 H N N 323 GLU HG3 H N N 324 GLU HE2 H N N 325 GLU HXT H N N 326 GLY N N N N 327 GLY CA C N N 328 GLY C C N N 329 GLY O O N N 330 GLY OXT O N N 331 GLY H H N N 332 GLY H2 H N N 333 GLY HA2 H N N 334 GLY HA3 H N N 335 GLY HXT H N N 336 HIS N N N N 337 HIS CA C N S 338 HIS C C N N 339 HIS O O N N 340 HIS CB C N N 341 HIS CG C Y N 342 HIS ND1 N Y N 343 HIS CD2 C Y N 344 HIS CE1 C Y N 345 HIS NE2 N Y N 346 HIS OXT O N N 347 HIS H H N N 348 HIS H2 H N N 349 HIS HA H N N 350 HIS HB2 H N N 351 HIS HB3 H N N 352 HIS HD1 H N N 353 HIS HD2 H N N 354 HIS HE1 H N N 355 HIS HE2 H N N 356 HIS HXT H N N 357 HOH O O N N 358 HOH H1 H N N 359 HOH H2 H N N 360 ILE N N N N 361 ILE CA C N S 362 ILE C C N N 363 ILE O O N N 364 ILE CB C N S 365 ILE CG1 C N N 366 ILE CG2 C N N 367 ILE CD1 C N N 368 ILE OXT O N N 369 ILE H H N N 370 ILE H2 H N N 371 ILE HA H N N 372 ILE HB H N N 373 ILE HG12 H N N 374 ILE HG13 H N N 375 ILE HG21 H N N 376 ILE HG22 H N N 377 ILE HG23 H N N 378 ILE HD11 H N N 379 ILE HD12 H N N 380 ILE HD13 H N N 381 ILE HXT H N N 382 LEU N N N N 383 LEU CA C N S 384 LEU C C N N 385 LEU O O N N 386 LEU CB C N N 387 LEU CG C N N 388 LEU CD1 C N N 389 LEU CD2 C N N 390 LEU OXT O N N 391 LEU H H N N 392 LEU H2 H N N 393 LEU HA H N N 394 LEU HB2 H N N 395 LEU HB3 H N N 396 LEU HG H N N 397 LEU HD11 H N N 398 LEU HD12 H N N 399 LEU HD13 H N N 400 LEU HD21 H N N 401 LEU HD22 H N N 402 LEU HD23 H N N 403 LEU HXT H N N 404 LYS N N N N 405 LYS CA C N S 406 LYS C C N N 407 LYS O O N N 408 LYS CB C N N 409 LYS CG C N N 410 LYS CD C N N 411 LYS CE C N N 412 LYS NZ N N N 413 LYS OXT O N N 414 LYS H H N N 415 LYS H2 H N N 416 LYS HA H N N 417 LYS HB2 H N N 418 LYS HB3 H N N 419 LYS HG2 H N N 420 LYS HG3 H N N 421 LYS HD2 H N N 422 LYS HD3 H N N 423 LYS HE2 H N N 424 LYS HE3 H N N 425 LYS HZ1 H N N 426 LYS HZ2 H N N 427 LYS HZ3 H N N 428 LYS HXT H N N 429 MET N N N N 430 MET CA C N S 431 MET C C N N 432 MET O O N N 433 MET CB C N N 434 MET CG C N N 435 MET SD S N N 436 MET CE C N N 437 MET OXT O N N 438 MET H H N N 439 MET H2 H N N 440 MET HA H N N 441 MET HB2 H N N 442 MET HB3 H N N 443 MET HG2 H N N 444 MET HG3 H N N 445 MET HE1 H N N 446 MET HE2 H N N 447 MET HE3 H N N 448 MET HXT H N N 449 MN MN MN N N 450 PHE N N N N 451 PHE CA C N S 452 PHE C C N N 453 PHE O O N N 454 PHE CB C N N 455 PHE CG C Y N 456 PHE CD1 C Y N 457 PHE CD2 C Y N 458 PHE CE1 C Y N 459 PHE CE2 C Y N 460 PHE CZ C Y N 461 PHE OXT O N N 462 PHE H H N N 463 PHE H2 H N N 464 PHE HA H N N 465 PHE HB2 H N N 466 PHE HB3 H N N 467 PHE HD1 H N N 468 PHE HD2 H N N 469 PHE HE1 H N N 470 PHE HE2 H N N 471 PHE HZ H N N 472 PHE HXT H N N 473 PRO N N N N 474 PRO CA C N S 475 PRO C C N N 476 PRO O O N N 477 PRO CB C N N 478 PRO CG C N N 479 PRO CD C N N 480 PRO OXT O N N 481 PRO H H N N 482 PRO HA H N N 483 PRO HB2 H N N 484 PRO HB3 H N N 485 PRO HG2 H N N 486 PRO HG3 H N N 487 PRO HD2 H N N 488 PRO HD3 H N N 489 PRO HXT H N N 490 SER N N N N 491 SER CA C N S 492 SER C C N N 493 SER O O N N 494 SER CB C N N 495 SER OG O N N 496 SER OXT O N N 497 SER H H N N 498 SER H2 H N N 499 SER HA H N N 500 SER HB2 H N N 501 SER HB3 H N N 502 SER HG H N N 503 SER HXT H N N 504 THR N N N N 505 THR CA C N S 506 THR C C N N 507 THR O O N N 508 THR CB C N R 509 THR OG1 O N N 510 THR CG2 C N N 511 THR OXT O N N 512 THR H H N N 513 THR H2 H N N 514 THR HA H N N 515 THR HB H N N 516 THR HG1 H N N 517 THR HG21 H N N 518 THR HG22 H N N 519 THR HG23 H N N 520 THR HXT H N N 521 TRP N N N N 522 TRP CA C N S 523 TRP C C N N 524 TRP O O N N 525 TRP CB C N N 526 TRP CG C Y N 527 TRP CD1 C Y N 528 TRP CD2 C Y N 529 TRP NE1 N Y N 530 TRP CE2 C Y N 531 TRP CE3 C Y N 532 TRP CZ2 C Y N 533 TRP CZ3 C Y N 534 TRP CH2 C Y N 535 TRP OXT O N N 536 TRP H H N N 537 TRP H2 H N N 538 TRP HA H N N 539 TRP HB2 H N N 540 TRP HB3 H N N 541 TRP HD1 H N N 542 TRP HE1 H N N 543 TRP HE3 H N N 544 TRP HZ2 H N N 545 TRP HZ3 H N N 546 TRP HH2 H N N 547 TRP HXT H N N 548 TYR N N N N 549 TYR CA C N S 550 TYR C C N N 551 TYR O O N N 552 TYR CB C N N 553 TYR CG C Y N 554 TYR CD1 C Y N 555 TYR CD2 C Y N 556 TYR CE1 C Y N 557 TYR CE2 C Y N 558 TYR CZ C Y N 559 TYR OH O N N 560 TYR OXT O N N 561 TYR H H N N 562 TYR H2 H N N 563 TYR HA H N N 564 TYR HB2 H N N 565 TYR HB3 H N N 566 TYR HD1 H N N 567 TYR HD2 H N N 568 TYR HE1 H N N 569 TYR HE2 H N N 570 TYR HH H N N 571 TYR HXT H N N 572 VAL N N N N 573 VAL CA C N S 574 VAL C C N N 575 VAL O O N N 576 VAL CB C N N 577 VAL CG1 C N N 578 VAL CG2 C N N 579 VAL OXT O N N 580 VAL H H N N 581 VAL H2 H N N 582 VAL HA H N N 583 VAL HB H N N 584 VAL HG11 H N N 585 VAL HG12 H N N 586 VAL HG13 H N N 587 VAL HG21 H N N 588 VAL HG22 H N N 589 VAL HG23 H N N 590 VAL HXT H N N 591 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YR S C8 sing N N 1 2YR C8 C9 sing N N 2 2YR N4 C9 sing N N 3 2YR N4 C4 sing N N 4 2YR C4 N3 doub N N 5 2YR C4 C5 sing N N 6 2YR N3 C2 sing N N 7 2YR C5 C6 doub N N 8 2YR C2 O2 doub N N 9 2YR C2 N1 sing N N 10 2YR C6 N1 sing N N 11 2YR N1 "C1'" sing N N 12 2YR "C2'" "C3'" sing N N 13 2YR "C2'" "C1'" sing N N 14 2YR "C3'" "O3'" sing N N 15 2YR "C3'" "C4'" sing N N 16 2YR "C1'" "O4'" sing N N 17 2YR "O4'" "C4'" sing N N 18 2YR "C4'" "C5'" sing N N 19 2YR "C5'" "O5'" sing N N 20 2YR "O5'" P sing N N 21 2YR OP2 P sing N N 22 2YR P OP1 doub N N 23 2YR OP2 H2 sing N N 24 2YR "C5'" H3 sing N N 25 2YR "C5'" H4 sing N N 26 2YR "C4'" H5 sing N N 27 2YR "C3'" H6 sing N N 28 2YR "O3'" H7 sing N N 29 2YR "C2'" H8 sing N N 30 2YR "C2'" H9 sing N N 31 2YR "C1'" H10 sing N N 32 2YR N4 H11 sing N N 33 2YR C5 H12 sing N N 34 2YR C6 H13 sing N N 35 2YR S H14 sing N N 36 2YR C8 H15 sing N N 37 2YR C8 H16 sing N N 38 2YR C9 H17 sing N N 39 2YR C9 H18 sing N N 40 2YR P OP3 sing N N 41 2YR OP3 H20 sing N N 42 AKG C1 O1 doub N N 43 AKG C1 O2 sing N N 44 AKG C1 C2 sing N N 45 AKG O2 HO2 sing N N 46 AKG C2 O5 doub N N 47 AKG C2 C3 sing N N 48 AKG C3 C4 sing N N 49 AKG C3 H31 sing N N 50 AKG C3 H32 sing N N 51 AKG C4 C5 sing N N 52 AKG C4 H41 sing N N 53 AKG C4 H42 sing N N 54 AKG C5 O3 doub N N 55 AKG C5 O4 sing N N 56 AKG O4 HO4 sing N N 57 ALA N CA sing N N 58 ALA N H sing N N 59 ALA N H2 sing N N 60 ALA CA C sing N N 61 ALA CA CB sing N N 62 ALA CA HA sing N N 63 ALA C O doub N N 64 ALA C OXT sing N N 65 ALA CB HB1 sing N N 66 ALA CB HB2 sing N N 67 ALA CB HB3 sing N N 68 ALA OXT HXT sing N N 69 ARG N CA sing N N 70 ARG N H sing N N 71 ARG N H2 sing N N 72 ARG CA C sing N N 73 ARG CA CB sing N N 74 ARG CA HA sing N N 75 ARG C O doub N N 76 ARG C OXT sing N N 77 ARG CB CG sing N N 78 ARG CB HB2 sing N N 79 ARG CB HB3 sing N N 80 ARG CG CD sing N N 81 ARG CG HG2 sing N N 82 ARG CG HG3 sing N N 83 ARG CD NE sing N N 84 ARG CD HD2 sing N N 85 ARG CD HD3 sing N N 86 ARG NE CZ sing N N 87 ARG NE HE sing N N 88 ARG CZ NH1 sing N N 89 ARG CZ NH2 doub N N 90 ARG NH1 HH11 sing N N 91 ARG NH1 HH12 sing N N 92 ARG NH2 HH21 sing N N 93 ARG NH2 HH22 sing N N 94 ARG OXT HXT sing N N 95 ASN N CA sing N N 96 ASN N H sing N N 97 ASN N H2 sing N N 98 ASN CA C sing N N 99 ASN CA CB sing N N 100 ASN CA HA sing N N 101 ASN C O doub N N 102 ASN C OXT sing N N 103 ASN CB CG sing N N 104 ASN CB HB2 sing N N 105 ASN CB HB3 sing N N 106 ASN CG OD1 doub N N 107 ASN CG ND2 sing N N 108 ASN ND2 HD21 sing N N 109 ASN ND2 HD22 sing N N 110 ASN OXT HXT sing N N 111 ASP N CA sing N N 112 ASP N H sing N N 113 ASP N H2 sing N N 114 ASP CA C sing N N 115 ASP CA CB sing N N 116 ASP CA HA sing N N 117 ASP C O doub N N 118 ASP C OXT sing N N 119 ASP CB CG sing N N 120 ASP CB HB2 sing N N 121 ASP CB HB3 sing N N 122 ASP CG OD1 doub N N 123 ASP CG OD2 sing N N 124 ASP OD2 HD2 sing N N 125 ASP OXT HXT sing N N 126 CYS N CA sing N N 127 CYS N H sing N N 128 CYS N H2 sing N N 129 CYS CA C sing N N 130 CYS CA CB sing N N 131 CYS CA HA sing N N 132 CYS C O doub N N 133 CYS C OXT sing N N 134 CYS CB SG sing N N 135 CYS CB HB2 sing N N 136 CYS CB HB3 sing N N 137 CYS SG HG sing N N 138 CYS OXT HXT sing N N 139 DA OP3 P sing N N 140 DA OP3 HOP3 sing N N 141 DA P OP1 doub N N 142 DA P OP2 sing N N 143 DA P "O5'" sing N N 144 DA OP2 HOP2 sing N N 145 DA "O5'" "C5'" sing N N 146 DA "C5'" "C4'" sing N N 147 DA "C5'" "H5'" sing N N 148 DA "C5'" "H5''" sing N N 149 DA "C4'" "O4'" sing N N 150 DA "C4'" "C3'" sing N N 151 DA "C4'" "H4'" sing N N 152 DA "O4'" "C1'" sing N N 153 DA "C3'" "O3'" sing N N 154 DA "C3'" "C2'" sing N N 155 DA "C3'" "H3'" sing N N 156 DA "O3'" "HO3'" sing N N 157 DA "C2'" "C1'" sing N N 158 DA "C2'" "H2'" sing N N 159 DA "C2'" "H2''" sing N N 160 DA "C1'" N9 sing N N 161 DA "C1'" "H1'" sing N N 162 DA N9 C8 sing Y N 163 DA N9 C4 sing Y N 164 DA C8 N7 doub Y N 165 DA C8 H8 sing N N 166 DA N7 C5 sing Y N 167 DA C5 C6 sing Y N 168 DA C5 C4 doub Y N 169 DA C6 N6 sing N N 170 DA C6 N1 doub Y N 171 DA N6 H61 sing N N 172 DA N6 H62 sing N N 173 DA N1 C2 sing Y N 174 DA C2 N3 doub Y N 175 DA C2 H2 sing N N 176 DA N3 C4 sing Y N 177 DC OP3 P sing N N 178 DC OP3 HOP3 sing N N 179 DC P OP1 doub N N 180 DC P OP2 sing N N 181 DC P "O5'" sing N N 182 DC OP2 HOP2 sing N N 183 DC "O5'" "C5'" sing N N 184 DC "C5'" "C4'" sing N N 185 DC "C5'" "H5'" sing N N 186 DC "C5'" "H5''" sing N N 187 DC "C4'" "O4'" sing N N 188 DC "C4'" "C3'" sing N N 189 DC "C4'" "H4'" sing N N 190 DC "O4'" "C1'" sing N N 191 DC "C3'" "O3'" sing N N 192 DC "C3'" "C2'" sing N N 193 DC "C3'" "H3'" sing N N 194 DC "O3'" "HO3'" sing N N 195 DC "C2'" "C1'" sing N N 196 DC "C2'" "H2'" sing N N 197 DC "C2'" "H2''" sing N N 198 DC "C1'" N1 sing N N 199 DC "C1'" "H1'" sing N N 200 DC N1 C2 sing N N 201 DC N1 C6 sing N N 202 DC C2 O2 doub N N 203 DC C2 N3 sing N N 204 DC N3 C4 doub N N 205 DC C4 N4 sing N N 206 DC C4 C5 sing N N 207 DC N4 H41 sing N N 208 DC N4 H42 sing N N 209 DC C5 C6 doub N N 210 DC C5 H5 sing N N 211 DC C6 H6 sing N N 212 DG OP3 P sing N N 213 DG OP3 HOP3 sing N N 214 DG P OP1 doub N N 215 DG P OP2 sing N N 216 DG P "O5'" sing N N 217 DG OP2 HOP2 sing N N 218 DG "O5'" "C5'" sing N N 219 DG "C5'" "C4'" sing N N 220 DG "C5'" "H5'" sing N N 221 DG "C5'" "H5''" sing N N 222 DG "C4'" "O4'" sing N N 223 DG "C4'" "C3'" sing N N 224 DG "C4'" "H4'" sing N N 225 DG "O4'" "C1'" sing N N 226 DG "C3'" "O3'" sing N N 227 DG "C3'" "C2'" sing N N 228 DG "C3'" "H3'" sing N N 229 DG "O3'" "HO3'" sing N N 230 DG "C2'" "C1'" sing N N 231 DG "C2'" "H2'" sing N N 232 DG "C2'" "H2''" sing N N 233 DG "C1'" N9 sing N N 234 DG "C1'" "H1'" sing N N 235 DG N9 C8 sing Y N 236 DG N9 C4 sing Y N 237 DG C8 N7 doub Y N 238 DG C8 H8 sing N N 239 DG N7 C5 sing Y N 240 DG C5 C6 sing N N 241 DG C5 C4 doub Y N 242 DG C6 O6 doub N N 243 DG C6 N1 sing N N 244 DG N1 C2 sing N N 245 DG N1 H1 sing N N 246 DG C2 N2 sing N N 247 DG C2 N3 doub N N 248 DG N2 H21 sing N N 249 DG N2 H22 sing N N 250 DG N3 C4 sing N N 251 DT OP3 P sing N N 252 DT OP3 HOP3 sing N N 253 DT P OP1 doub N N 254 DT P OP2 sing N N 255 DT P "O5'" sing N N 256 DT OP2 HOP2 sing N N 257 DT "O5'" "C5'" sing N N 258 DT "C5'" "C4'" sing N N 259 DT "C5'" "H5'" sing N N 260 DT "C5'" "H5''" sing N N 261 DT "C4'" "O4'" sing N N 262 DT "C4'" "C3'" sing N N 263 DT "C4'" "H4'" sing N N 264 DT "O4'" "C1'" sing N N 265 DT "C3'" "O3'" sing N N 266 DT "C3'" "C2'" sing N N 267 DT "C3'" "H3'" sing N N 268 DT "O3'" "HO3'" sing N N 269 DT "C2'" "C1'" sing N N 270 DT "C2'" "H2'" sing N N 271 DT "C2'" "H2''" sing N N 272 DT "C1'" N1 sing N N 273 DT "C1'" "H1'" sing N N 274 DT N1 C2 sing N N 275 DT N1 C6 sing N N 276 DT C2 O2 doub N N 277 DT C2 N3 sing N N 278 DT N3 C4 sing N N 279 DT N3 H3 sing N N 280 DT C4 O4 doub N N 281 DT C4 C5 sing N N 282 DT C5 C7 sing N N 283 DT C5 C6 doub N N 284 DT C7 H71 sing N N 285 DT C7 H72 sing N N 286 DT C7 H73 sing N N 287 DT C6 H6 sing N N 288 GLN N CA sing N N 289 GLN N H sing N N 290 GLN N H2 sing N N 291 GLN CA C sing N N 292 GLN CA CB sing N N 293 GLN CA HA sing N N 294 GLN C O doub N N 295 GLN C OXT sing N N 296 GLN CB CG sing N N 297 GLN CB HB2 sing N N 298 GLN CB HB3 sing N N 299 GLN CG CD sing N N 300 GLN CG HG2 sing N N 301 GLN CG HG3 sing N N 302 GLN CD OE1 doub N N 303 GLN CD NE2 sing N N 304 GLN NE2 HE21 sing N N 305 GLN NE2 HE22 sing N N 306 GLN OXT HXT sing N N 307 GLU N CA sing N N 308 GLU N H sing N N 309 GLU N H2 sing N N 310 GLU CA C sing N N 311 GLU CA CB sing N N 312 GLU CA HA sing N N 313 GLU C O doub N N 314 GLU C OXT sing N N 315 GLU CB CG sing N N 316 GLU CB HB2 sing N N 317 GLU CB HB3 sing N N 318 GLU CG CD sing N N 319 GLU CG HG2 sing N N 320 GLU CG HG3 sing N N 321 GLU CD OE1 doub N N 322 GLU CD OE2 sing N N 323 GLU OE2 HE2 sing N N 324 GLU OXT HXT sing N N 325 GLY N CA sing N N 326 GLY N H sing N N 327 GLY N H2 sing N N 328 GLY CA C sing N N 329 GLY CA HA2 sing N N 330 GLY CA HA3 sing N N 331 GLY C O doub N N 332 GLY C OXT sing N N 333 GLY OXT HXT sing N N 334 HIS N CA sing N N 335 HIS N H sing N N 336 HIS N H2 sing N N 337 HIS CA C sing N N 338 HIS CA CB sing N N 339 HIS CA HA sing N N 340 HIS C O doub N N 341 HIS C OXT sing N N 342 HIS CB CG sing N N 343 HIS CB HB2 sing N N 344 HIS CB HB3 sing N N 345 HIS CG ND1 sing Y N 346 HIS CG CD2 doub Y N 347 HIS ND1 CE1 doub Y N 348 HIS ND1 HD1 sing N N 349 HIS CD2 NE2 sing Y N 350 HIS CD2 HD2 sing N N 351 HIS CE1 NE2 sing Y N 352 HIS CE1 HE1 sing N N 353 HIS NE2 HE2 sing N N 354 HIS OXT HXT sing N N 355 HOH O H1 sing N N 356 HOH O H2 sing N N 357 ILE N CA sing N N 358 ILE N H sing N N 359 ILE N H2 sing N N 360 ILE CA C sing N N 361 ILE CA CB sing N N 362 ILE CA HA sing N N 363 ILE C O doub N N 364 ILE C OXT sing N N 365 ILE CB CG1 sing N N 366 ILE CB CG2 sing N N 367 ILE CB HB sing N N 368 ILE CG1 CD1 sing N N 369 ILE CG1 HG12 sing N N 370 ILE CG1 HG13 sing N N 371 ILE CG2 HG21 sing N N 372 ILE CG2 HG22 sing N N 373 ILE CG2 HG23 sing N N 374 ILE CD1 HD11 sing N N 375 ILE CD1 HD12 sing N N 376 ILE CD1 HD13 sing N N 377 ILE OXT HXT sing N N 378 LEU N CA sing N N 379 LEU N H sing N N 380 LEU N H2 sing N N 381 LEU CA C sing N N 382 LEU CA CB sing N N 383 LEU CA HA sing N N 384 LEU C O doub N N 385 LEU C OXT sing N N 386 LEU CB CG sing N N 387 LEU CB HB2 sing N N 388 LEU CB HB3 sing N N 389 LEU CG CD1 sing N N 390 LEU CG CD2 sing N N 391 LEU CG HG sing N N 392 LEU CD1 HD11 sing N N 393 LEU CD1 HD12 sing N N 394 LEU CD1 HD13 sing N N 395 LEU CD2 HD21 sing N N 396 LEU CD2 HD22 sing N N 397 LEU CD2 HD23 sing N N 398 LEU OXT HXT sing N N 399 LYS N CA sing N N 400 LYS N H sing N N 401 LYS N H2 sing N N 402 LYS CA C sing N N 403 LYS CA CB sing N N 404 LYS CA HA sing N N 405 LYS C O doub N N 406 LYS C OXT sing N N 407 LYS CB CG sing N N 408 LYS CB HB2 sing N N 409 LYS CB HB3 sing N N 410 LYS CG CD sing N N 411 LYS CG HG2 sing N N 412 LYS CG HG3 sing N N 413 LYS CD CE sing N N 414 LYS CD HD2 sing N N 415 LYS CD HD3 sing N N 416 LYS CE NZ sing N N 417 LYS CE HE2 sing N N 418 LYS CE HE3 sing N N 419 LYS NZ HZ1 sing N N 420 LYS NZ HZ2 sing N N 421 LYS NZ HZ3 sing N N 422 LYS OXT HXT sing N N 423 MET N CA sing N N 424 MET N H sing N N 425 MET N H2 sing N N 426 MET CA C sing N N 427 MET CA CB sing N N 428 MET CA HA sing N N 429 MET C O doub N N 430 MET C OXT sing N N 431 MET CB CG sing N N 432 MET CB HB2 sing N N 433 MET CB HB3 sing N N 434 MET CG SD sing N N 435 MET CG HG2 sing N N 436 MET CG HG3 sing N N 437 MET SD CE sing N N 438 MET CE HE1 sing N N 439 MET CE HE2 sing N N 440 MET CE HE3 sing N N 441 MET OXT HXT sing N N 442 PHE N CA sing N N 443 PHE N H sing N N 444 PHE N H2 sing N N 445 PHE CA C sing N N 446 PHE CA CB sing N N 447 PHE CA HA sing N N 448 PHE C O doub N N 449 PHE C OXT sing N N 450 PHE CB CG sing N N 451 PHE CB HB2 sing N N 452 PHE CB HB3 sing N N 453 PHE CG CD1 doub Y N 454 PHE CG CD2 sing Y N 455 PHE CD1 CE1 sing Y N 456 PHE CD1 HD1 sing N N 457 PHE CD2 CE2 doub Y N 458 PHE CD2 HD2 sing N N 459 PHE CE1 CZ doub Y N 460 PHE CE1 HE1 sing N N 461 PHE CE2 CZ sing Y N 462 PHE CE2 HE2 sing N N 463 PHE CZ HZ sing N N 464 PHE OXT HXT sing N N 465 PRO N CA sing N N 466 PRO N CD sing N N 467 PRO N H sing N N 468 PRO CA C sing N N 469 PRO CA CB sing N N 470 PRO CA HA sing N N 471 PRO C O doub N N 472 PRO C OXT sing N N 473 PRO CB CG sing N N 474 PRO CB HB2 sing N N 475 PRO CB HB3 sing N N 476 PRO CG CD sing N N 477 PRO CG HG2 sing N N 478 PRO CG HG3 sing N N 479 PRO CD HD2 sing N N 480 PRO CD HD3 sing N N 481 PRO OXT HXT sing N N 482 SER N CA sing N N 483 SER N H sing N N 484 SER N H2 sing N N 485 SER CA C sing N N 486 SER CA CB sing N N 487 SER CA HA sing N N 488 SER C O doub N N 489 SER C OXT sing N N 490 SER CB OG sing N N 491 SER CB HB2 sing N N 492 SER CB HB3 sing N N 493 SER OG HG sing N N 494 SER OXT HXT sing N N 495 THR N CA sing N N 496 THR N H sing N N 497 THR N H2 sing N N 498 THR CA C sing N N 499 THR CA CB sing N N 500 THR CA HA sing N N 501 THR C O doub N N 502 THR C OXT sing N N 503 THR CB OG1 sing N N 504 THR CB CG2 sing N N 505 THR CB HB sing N N 506 THR OG1 HG1 sing N N 507 THR CG2 HG21 sing N N 508 THR CG2 HG22 sing N N 509 THR CG2 HG23 sing N N 510 THR OXT HXT sing N N 511 TRP N CA sing N N 512 TRP N H sing N N 513 TRP N H2 sing N N 514 TRP CA C sing N N 515 TRP CA CB sing N N 516 TRP CA HA sing N N 517 TRP C O doub N N 518 TRP C OXT sing N N 519 TRP CB CG sing N N 520 TRP CB HB2 sing N N 521 TRP CB HB3 sing N N 522 TRP CG CD1 doub Y N 523 TRP CG CD2 sing Y N 524 TRP CD1 NE1 sing Y N 525 TRP CD1 HD1 sing N N 526 TRP CD2 CE2 doub Y N 527 TRP CD2 CE3 sing Y N 528 TRP NE1 CE2 sing Y N 529 TRP NE1 HE1 sing N N 530 TRP CE2 CZ2 sing Y N 531 TRP CE3 CZ3 doub Y N 532 TRP CE3 HE3 sing N N 533 TRP CZ2 CH2 doub Y N 534 TRP CZ2 HZ2 sing N N 535 TRP CZ3 CH2 sing Y N 536 TRP CZ3 HZ3 sing N N 537 TRP CH2 HH2 sing N N 538 TRP OXT HXT sing N N 539 TYR N CA sing N N 540 TYR N H sing N N 541 TYR N H2 sing N N 542 TYR CA C sing N N 543 TYR CA CB sing N N 544 TYR CA HA sing N N 545 TYR C O doub N N 546 TYR C OXT sing N N 547 TYR CB CG sing N N 548 TYR CB HB2 sing N N 549 TYR CB HB3 sing N N 550 TYR CG CD1 doub Y N 551 TYR CG CD2 sing Y N 552 TYR CD1 CE1 sing Y N 553 TYR CD1 HD1 sing N N 554 TYR CD2 CE2 doub Y N 555 TYR CD2 HD2 sing N N 556 TYR CE1 CZ doub Y N 557 TYR CE1 HE1 sing N N 558 TYR CE2 CZ sing Y N 559 TYR CE2 HE2 sing N N 560 TYR CZ OH sing N N 561 TYR OH HH sing N N 562 TYR OXT HXT sing N N 563 VAL N CA sing N N 564 VAL N H sing N N 565 VAL N H2 sing N N 566 VAL CA C sing N N 567 VAL CA CB sing N N 568 VAL CA HA sing N N 569 VAL C O doub N N 570 VAL C OXT sing N N 571 VAL CB CG1 sing N N 572 VAL CB CG2 sing N N 573 VAL CB HB sing N N 574 VAL CG1 HG11 sing N N 575 VAL CG1 HG12 sing N N 576 VAL CG1 HG13 sing N N 577 VAL CG2 HG21 sing N N 578 VAL CG2 HG22 sing N N 579 VAL CG2 HG23 sing N N 580 VAL OXT HXT sing N N 581 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BU0 'double helix' 3BU0 'b-form double helix' 3BU0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 12 1_555 -0.490 -0.189 0.081 -9.339 -16.136 0.584 1 B_DG3:DC12_C B 3 ? C 12 ? 19 1 1 B DT 4 1_555 C DA 11 1_555 0.055 -0.175 0.115 -11.654 -13.294 5.966 2 B_DT4:DA11_C B 4 ? C 11 ? 20 1 1 B DA 5 1_555 C DT 10 1_555 0.157 -0.191 -0.123 -5.887 -4.449 -0.024 3 B_DA5:DT10_C B 5 ? C 10 ? 20 1 1 B DT 6 1_555 C DA 9 1_555 0.138 -0.254 -0.209 13.778 17.820 2.745 4 B_DT6:DA9_C B 6 ? C 9 ? 20 1 1 B DA 8 1_555 C DT 7 1_555 0.261 -0.045 -0.223 -14.453 -8.611 14.162 5 B_DA8:DT7_C B 8 ? C 7 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.363 -0.165 -0.043 1.429 -5.110 -2.099 6 B_DT9:DA6_C B 9 ? C 6 ? 20 1 1 B DT 10 1_555 C DA 5 1_555 0.042 -0.308 -0.224 1.979 -24.033 -3.988 7 B_DT10:DA5_C B 10 ? C 5 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.540 -0.321 -0.483 -16.367 -7.675 -0.714 8 B_DG11:DC4_C B 11 ? C 4 ? 19 1 1 B DC 12 1_555 C DG 3 1_555 0.125 -0.141 0.350 -8.436 -10.109 -0.479 9 B_DC12:DG3_C B 12 ? C 3 ? 19 1 1 B DG 13 1_555 C DC 2 1_555 -0.249 -0.252 -0.036 -1.454 -8.806 0.167 10 B_DG13:DC2_C B 13 ? C 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 12 1_555 B DT 4 1_555 C DA 11 1_555 -0.538 -1.220 3.363 2.917 -1.119 30.304 -2.092 1.622 3.339 -2.133 -5.560 30.461 1 BB_DG3DT4:DA11DC12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DT 4 1_555 C DA 11 1_555 B DA 5 1_555 C DT 10 1_555 0.047 -0.788 3.180 2.461 8.220 34.192 -2.459 0.269 2.914 13.715 -4.106 35.221 2 BB_DT4DA5:DT10DA11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DA 5 1_555 C DT 10 1_555 B DT 6 1_555 C DA 9 1_555 -0.556 -0.602 2.984 2.058 6.391 17.869 -4.672 2.596 2.537 19.695 -6.343 19.079 3 BB_DA5DT6:DA9DT10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DA 8 1_555 C DT 7 1_555 B DT 9 1_555 C DA 6 1_555 -1.048 -0.652 3.004 2.244 8.311 23.107 -3.746 3.054 2.509 19.885 -5.370 24.638 4 BB_DA8DT9:DA6DT7_CC B 8 ? C 7 ? B 9 ? C 6 ? 1 B DT 9 1_555 C DA 6 1_555 B DT 10 1_555 C DA 5 1_555 -0.369 -0.087 3.178 3.995 -3.239 41.521 0.207 0.922 3.128 -4.548 -5.609 41.824 5 BB_DT9DT10:DA5DA6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 B DT 10 1_555 C DA 5 1_555 B DG 11 1_555 C DC 4 1_555 0.989 0.878 3.799 2.646 10.347 37.429 -0.203 -1.096 3.953 15.736 -4.024 38.871 6 BB_DT10DG11:DC4DA5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 B DG 11 1_555 C DC 4 1_555 B DC 12 1_555 C DG 3 1_555 0.056 -0.242 3.062 -7.189 1.718 25.545 -0.947 -1.885 2.915 3.786 15.839 26.576 7 BB_DG11DC12:DG3DC4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DC 12 1_555 C DG 3 1_555 B DG 13 1_555 C DC 2 1_555 -0.242 -0.160 3.128 2.463 9.897 33.914 -1.647 0.743 2.943 16.509 -4.109 35.371 8 BB_DC12DG13:DC2DG3_CC B 12 ? C 3 ? B 13 ? C 2 ? # _atom_sites.entry_id 3BU0 _atom_sites.fract_transf_matrix[1][1] 0.012888 _atom_sites.fract_transf_matrix[1][2] 0.007441 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014882 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004404 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_