data_3BUC # _entry.id 3BUC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BUC pdb_00003buc 10.2210/pdb3buc/pdb NDB PD1074 ? ? RCSB RCSB045965 ? ? WWPDB D_1000045965 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_conn_angle 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_conn_type 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' pdbx_entry_details 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.value' 14 3 'Structure model' '_struct_conn.conn_type_id' 15 3 'Structure model' '_struct_conn.id' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 32 3 'Structure model' '_struct_conn_type.id' 33 3 'Structure model' '_struct_ref_seq_dif.details' 34 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BUC _pdbx_database_status.recvd_initial_deposition_date 2008-01-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FD8 'E. coli homolog' unspecified PDB 2IUW 'Human homolog' unspecified PDB 3BTX . unspecified PDB 3BTY . unspecified PDB 3BTZ . unspecified PDB 3BU0 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, C.-G.' 1 'Yi, C.' 2 'He, C.' 3 # _citation.id primary _citation.title 'Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.' _citation.journal_abbrev Nature _citation.journal_volume 452 _citation.page_first 961 _citation.page_last 965 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18432238 _citation.pdbx_database_id_DOI 10.1038/nature06889 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, C.G.' 1 ? primary 'Yi, C.' 2 ? primary 'Duguid, E.M.' 3 ? primary 'Sullivan, C.T.' 4 ? primary 'Jian, X.' 5 ? primary 'Rice, P.A.' 6 ? primary 'He, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3') ; 3981.631 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3') ; 3950.598 1 ? ? ? ? 3 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23136.414 1 1.14.11.- 'C67S, C165S, G169C, C192S' ? ? 4 non-polymer syn propane-1-thiol 76.161 1 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 6 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 7 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(DA)(DT)(MA7)(DA)(DC)(DT)(DG)(DC)(DG)' CTGTATAACTGCG B ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DA)(DG)(DT)(DT)(DA)(DT)(DA)(DC)(DA)' TCGCAGTTATACA C ? 3 'polypeptide(L)' no no ;SWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; ;SWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 propane-1-thiol XL3 5 'MANGANESE (II) ION' MN 6 '2-OXOGLUTARIC ACID' AKG 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 MA7 n 1 8 DA n 1 9 DC n 1 10 DT n 1 11 DG n 1 12 DC n 1 13 DG n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DC n 2 5 DA n 2 6 DG n 2 7 DT n 2 8 DT n 2 9 DA n 2 10 DT n 2 11 DA n 2 12 DC n 2 13 DA n 3 1 SER n 3 2 TRP n 3 3 ARG n 3 4 HIS n 3 5 ILE n 3 6 ARG n 3 7 ALA n 3 8 GLU n 3 9 GLY n 3 10 LEU n 3 11 ASP n 3 12 SER n 3 13 SER n 3 14 TYR n 3 15 THR n 3 16 VAL n 3 17 LEU n 3 18 PHE n 3 19 GLY n 3 20 LYS n 3 21 ALA n 3 22 GLU n 3 23 ALA n 3 24 ASP n 3 25 GLU n 3 26 ILE n 3 27 PHE n 3 28 GLN n 3 29 GLU n 3 30 LEU n 3 31 GLU n 3 32 LYS n 3 33 GLU n 3 34 VAL n 3 35 GLU n 3 36 TYR n 3 37 PHE n 3 38 THR n 3 39 GLY n 3 40 ALA n 3 41 LEU n 3 42 ALA n 3 43 ARG n 3 44 VAL n 3 45 GLN n 3 46 VAL n 3 47 PHE n 3 48 GLY n 3 49 LYS n 3 50 TRP n 3 51 HIS n 3 52 SER n 3 53 VAL n 3 54 PRO n 3 55 ARG n 3 56 LYS n 3 57 GLN n 3 58 ALA n 3 59 THR n 3 60 TYR n 3 61 GLY n 3 62 ASP n 3 63 ALA n 3 64 GLY n 3 65 LEU n 3 66 THR n 3 67 TYR n 3 68 THR n 3 69 PHE n 3 70 SER n 3 71 GLY n 3 72 LEU n 3 73 THR n 3 74 LEU n 3 75 SER n 3 76 PRO n 3 77 LYS n 3 78 PRO n 3 79 TRP n 3 80 ILE n 3 81 PRO n 3 82 VAL n 3 83 LEU n 3 84 GLU n 3 85 ARG n 3 86 ILE n 3 87 ARG n 3 88 ASP n 3 89 HIS n 3 90 VAL n 3 91 SER n 3 92 GLY n 3 93 VAL n 3 94 THR n 3 95 GLY n 3 96 GLN n 3 97 THR n 3 98 PHE n 3 99 ASN n 3 100 PHE n 3 101 VAL n 3 102 LEU n 3 103 ILE n 3 104 ASN n 3 105 ARG n 3 106 TYR n 3 107 LYS n 3 108 ASP n 3 109 GLY n 3 110 SER n 3 111 ASP n 3 112 HIS n 3 113 ILE n 3 114 CYS n 3 115 GLU n 3 116 HIS n 3 117 ARG n 3 118 ASP n 3 119 ASP n 3 120 GLU n 3 121 ARG n 3 122 GLU n 3 123 LEU n 3 124 ALA n 3 125 PRO n 3 126 GLY n 3 127 SER n 3 128 PRO n 3 129 ILE n 3 130 ALA n 3 131 SER n 3 132 VAL n 3 133 SER n 3 134 PHE n 3 135 GLY n 3 136 ALA n 3 137 SER n 3 138 ARG n 3 139 ASP n 3 140 PHE n 3 141 VAL n 3 142 PHE n 3 143 ARG n 3 144 HIS n 3 145 LYS n 3 146 ASP n 3 147 SER n 3 148 ARG n 3 149 GLY n 3 150 LYS n 3 151 SER n 3 152 PRO n 3 153 SER n 3 154 ARG n 3 155 ARG n 3 156 VAL n 3 157 ALA n 3 158 VAL n 3 159 VAL n 3 160 ARG n 3 161 LEU n 3 162 PRO n 3 163 LEU n 3 164 ALA n 3 165 HIS n 3 166 GLY n 3 167 SER n 3 168 LEU n 3 169 LEU n 3 170 MET n 3 171 MET n 3 172 ASN n 3 173 HIS n 3 174 PRO n 3 175 THR n 3 176 ASN n 3 177 THR n 3 178 HIS n 3 179 TRP n 3 180 TYR n 3 181 HIS n 3 182 SER n 3 183 LEU n 3 184 PRO n 3 185 VAL n 3 186 ARG n 3 187 LYS n 3 188 LYS n 3 189 VAL n 3 190 LEU n 3 191 ALA n 3 192 PRO n 3 193 ARG n 3 194 VAL n 3 195 ASN n 3 196 LEU n 3 197 THR n 3 198 PHE n 3 199 ARG n 3 200 LYS n 3 201 ILE n 3 202 LEU n 3 203 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MA7 'DNA linking' n "1N-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H17 N5 O6 P 1' 346.256 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XL3 non-polymer . propane-1-thiol ? 'C3 H8 S' 76.161 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C B . n A 1 2 DT 2 2 2 DT T B . n A 1 3 DG 3 3 3 DG G B . n A 1 4 DT 4 4 4 DT T B . n A 1 5 DA 5 5 5 DA A B . n A 1 6 DT 6 6 6 DT T B . n A 1 7 MA7 7 7 7 MA7 MA7 B . n A 1 8 DA 8 8 8 DA A B . n A 1 9 DC 9 9 9 DC C B . n A 1 10 DT 10 10 10 DT T B . n A 1 11 DG 11 11 11 DG G B . n A 1 12 DC 12 12 12 DC C B . n A 1 13 DG 13 13 13 DG G B . n B 2 1 DT 1 1 1 DT T C . n B 2 2 DC 2 2 2 DC C C . n B 2 3 DG 3 3 3 DG G C . n B 2 4 DC 4 4 4 DC C C . n B 2 5 DA 5 5 5 DA A C . n B 2 6 DG 6 6 6 DG G C . n B 2 7 DT 7 7 7 DT T C . n B 2 8 DT 8 8 8 DT T C . n B 2 9 DA 9 9 9 DA A C . n B 2 10 DT 10 10 10 DT T C . n B 2 11 DA 11 11 11 DA A C . n B 2 12 DC 12 12 12 DC C C . n B 2 13 DA 13 13 13 DA A C . n C 3 1 SER 1 56 56 SER SER A . n C 3 2 TRP 2 57 57 TRP TRP A . n C 3 3 ARG 3 58 58 ARG ARG A . n C 3 4 HIS 4 59 59 HIS HIS A . n C 3 5 ILE 5 60 60 ILE ILE A . n C 3 6 ARG 6 61 61 ARG ARG A . n C 3 7 ALA 7 62 62 ALA ALA A . n C 3 8 GLU 8 63 63 GLU GLU A . n C 3 9 GLY 9 64 64 GLY GLY A . n C 3 10 LEU 10 65 65 LEU LEU A . n C 3 11 ASP 11 66 66 ASP ASP A . n C 3 12 SER 12 67 67 SER SER A . n C 3 13 SER 13 68 68 SER SER A . n C 3 14 TYR 14 69 69 TYR TYR A . n C 3 15 THR 15 70 70 THR THR A . n C 3 16 VAL 16 71 71 VAL VAL A . n C 3 17 LEU 17 72 72 LEU LEU A . n C 3 18 PHE 18 73 73 PHE PHE A . n C 3 19 GLY 19 74 74 GLY GLY A . n C 3 20 LYS 20 75 75 LYS LYS A . n C 3 21 ALA 21 76 76 ALA ALA A . n C 3 22 GLU 22 77 77 GLU GLU A . n C 3 23 ALA 23 78 78 ALA ALA A . n C 3 24 ASP 24 79 79 ASP ASP A . n C 3 25 GLU 25 80 80 GLU GLU A . n C 3 26 ILE 26 81 81 ILE ILE A . n C 3 27 PHE 27 82 82 PHE PHE A . n C 3 28 GLN 28 83 83 GLN GLN A . n C 3 29 GLU 29 84 84 GLU GLU A . n C 3 30 LEU 30 85 85 LEU LEU A . n C 3 31 GLU 31 86 86 GLU GLU A . n C 3 32 LYS 32 87 87 LYS LYS A . n C 3 33 GLU 33 88 88 GLU GLU A . n C 3 34 VAL 34 89 89 VAL VAL A . n C 3 35 GLU 35 90 90 GLU GLU A . n C 3 36 TYR 36 91 91 TYR TYR A . n C 3 37 PHE 37 92 92 PHE PHE A . n C 3 38 THR 38 93 93 THR THR A . n C 3 39 GLY 39 94 94 GLY GLY A . n C 3 40 ALA 40 95 95 ALA ALA A . n C 3 41 LEU 41 96 96 LEU LEU A . n C 3 42 ALA 42 97 97 ALA ALA A . n C 3 43 ARG 43 98 98 ARG ARG A . n C 3 44 VAL 44 99 99 VAL VAL A . n C 3 45 GLN 45 100 100 GLN GLN A . n C 3 46 VAL 46 101 101 VAL VAL A . n C 3 47 PHE 47 102 102 PHE PHE A . n C 3 48 GLY 48 103 103 GLY GLY A . n C 3 49 LYS 49 104 104 LYS LYS A . n C 3 50 TRP 50 105 105 TRP TRP A . n C 3 51 HIS 51 106 106 HIS HIS A . n C 3 52 SER 52 107 107 SER SER A . n C 3 53 VAL 53 108 108 VAL VAL A . n C 3 54 PRO 54 109 109 PRO PRO A . n C 3 55 ARG 55 110 110 ARG ARG A . n C 3 56 LYS 56 111 111 LYS LYS A . n C 3 57 GLN 57 112 112 GLN GLN A . n C 3 58 ALA 58 113 113 ALA ALA A . n C 3 59 THR 59 114 114 THR THR A . n C 3 60 TYR 60 115 115 TYR TYR A . n C 3 61 GLY 61 116 116 GLY GLY A . n C 3 62 ASP 62 117 117 ASP ASP A . n C 3 63 ALA 63 118 118 ALA ALA A . n C 3 64 GLY 64 119 119 GLY GLY A . n C 3 65 LEU 65 120 120 LEU LEU A . n C 3 66 THR 66 121 121 THR THR A . n C 3 67 TYR 67 122 122 TYR TYR A . n C 3 68 THR 68 123 123 THR THR A . n C 3 69 PHE 69 124 124 PHE PHE A . n C 3 70 SER 70 125 125 SER SER A . n C 3 71 GLY 71 126 126 GLY GLY A . n C 3 72 LEU 72 127 127 LEU LEU A . n C 3 73 THR 73 128 128 THR THR A . n C 3 74 LEU 74 129 129 LEU LEU A . n C 3 75 SER 75 130 130 SER SER A . n C 3 76 PRO 76 131 131 PRO PRO A . n C 3 77 LYS 77 132 132 LYS LYS A . n C 3 78 PRO 78 133 133 PRO PRO A . n C 3 79 TRP 79 134 134 TRP TRP A . n C 3 80 ILE 80 135 135 ILE ILE A . n C 3 81 PRO 81 136 136 PRO PRO A . n C 3 82 VAL 82 137 137 VAL VAL A . n C 3 83 LEU 83 138 138 LEU LEU A . n C 3 84 GLU 84 139 139 GLU GLU A . n C 3 85 ARG 85 140 140 ARG ARG A . n C 3 86 ILE 86 141 141 ILE ILE A . n C 3 87 ARG 87 142 142 ARG ARG A . n C 3 88 ASP 88 143 143 ASP ASP A . n C 3 89 HIS 89 144 144 HIS HIS A . n C 3 90 VAL 90 145 145 VAL VAL A . n C 3 91 SER 91 146 146 SER SER A . n C 3 92 GLY 92 147 147 GLY GLY A . n C 3 93 VAL 93 148 148 VAL VAL A . n C 3 94 THR 94 149 149 THR THR A . n C 3 95 GLY 95 150 150 GLY GLY A . n C 3 96 GLN 96 151 151 GLN GLN A . n C 3 97 THR 97 152 152 THR THR A . n C 3 98 PHE 98 153 153 PHE PHE A . n C 3 99 ASN 99 154 154 ASN ASN A . n C 3 100 PHE 100 155 155 PHE PHE A . n C 3 101 VAL 101 156 156 VAL VAL A . n C 3 102 LEU 102 157 157 LEU LEU A . n C 3 103 ILE 103 158 158 ILE ILE A . n C 3 104 ASN 104 159 159 ASN ASN A . n C 3 105 ARG 105 160 160 ARG ARG A . n C 3 106 TYR 106 161 161 TYR TYR A . n C 3 107 LYS 107 162 162 LYS LYS A . n C 3 108 ASP 108 163 163 ASP ASP A . n C 3 109 GLY 109 164 164 GLY GLY A . n C 3 110 SER 110 165 165 SER SER A . n C 3 111 ASP 111 166 166 ASP ASP A . n C 3 112 HIS 112 167 167 HIS HIS A . n C 3 113 ILE 113 168 168 ILE ILE A . n C 3 114 CYS 114 169 169 CYS CYS A . n C 3 115 GLU 115 170 170 GLU GLU A . n C 3 116 HIS 116 171 171 HIS HIS A . n C 3 117 ARG 117 172 172 ARG ARG A . n C 3 118 ASP 118 173 173 ASP ASP A . n C 3 119 ASP 119 174 174 ASP ASP A . n C 3 120 GLU 120 175 175 GLU GLU A . n C 3 121 ARG 121 176 176 ARG ARG A . n C 3 122 GLU 122 177 177 GLU GLU A . n C 3 123 LEU 123 178 178 LEU LEU A . n C 3 124 ALA 124 179 179 ALA ALA A . n C 3 125 PRO 125 180 180 PRO PRO A . n C 3 126 GLY 126 181 181 GLY GLY A . n C 3 127 SER 127 182 182 SER SER A . n C 3 128 PRO 128 183 183 PRO PRO A . n C 3 129 ILE 129 184 184 ILE ILE A . n C 3 130 ALA 130 185 185 ALA ALA A . n C 3 131 SER 131 186 186 SER SER A . n C 3 132 VAL 132 187 187 VAL VAL A . n C 3 133 SER 133 188 188 SER SER A . n C 3 134 PHE 134 189 189 PHE PHE A . n C 3 135 GLY 135 190 190 GLY GLY A . n C 3 136 ALA 136 191 191 ALA ALA A . n C 3 137 SER 137 192 192 SER SER A . n C 3 138 ARG 138 193 193 ARG ARG A . n C 3 139 ASP 139 194 194 ASP ASP A . n C 3 140 PHE 140 195 195 PHE PHE A . n C 3 141 VAL 141 196 196 VAL VAL A . n C 3 142 PHE 142 197 197 PHE PHE A . n C 3 143 ARG 143 198 198 ARG ARG A . n C 3 144 HIS 144 199 199 HIS HIS A . n C 3 145 LYS 145 200 200 LYS LYS A . n C 3 146 ASP 146 201 201 ASP ASP A . n C 3 147 SER 147 202 202 SER SER A . n C 3 148 ARG 148 203 203 ARG ARG A . n C 3 149 GLY 149 204 ? ? ? A . n C 3 150 LYS 150 205 ? ? ? A . n C 3 151 SER 151 206 ? ? ? A . n C 3 152 PRO 152 207 207 PRO PRO A . n C 3 153 SER 153 208 208 SER SER A . n C 3 154 ARG 154 209 209 ARG ARG A . n C 3 155 ARG 155 210 210 ARG ARG A . n C 3 156 VAL 156 211 211 VAL VAL A . n C 3 157 ALA 157 212 212 ALA ALA A . n C 3 158 VAL 158 213 213 VAL VAL A . n C 3 159 VAL 159 214 214 VAL VAL A . n C 3 160 ARG 160 215 215 ARG ARG A . n C 3 161 LEU 161 216 216 LEU LEU A . n C 3 162 PRO 162 217 217 PRO PRO A . n C 3 163 LEU 163 218 218 LEU LEU A . n C 3 164 ALA 164 219 219 ALA ALA A . n C 3 165 HIS 165 220 220 HIS HIS A . n C 3 166 GLY 166 221 221 GLY GLY A . n C 3 167 SER 167 222 222 SER SER A . n C 3 168 LEU 168 223 223 LEU LEU A . n C 3 169 LEU 169 224 224 LEU LEU A . n C 3 170 MET 170 225 225 MET MET A . n C 3 171 MET 171 226 226 MET MET A . n C 3 172 ASN 172 227 227 ASN ASN A . n C 3 173 HIS 173 228 228 HIS HIS A . n C 3 174 PRO 174 229 229 PRO PRO A . n C 3 175 THR 175 230 230 THR THR A . n C 3 176 ASN 176 231 231 ASN ASN A . n C 3 177 THR 177 232 232 THR THR A . n C 3 178 HIS 178 233 233 HIS HIS A . n C 3 179 TRP 179 234 234 TRP TRP A . n C 3 180 TYR 180 235 235 TYR TYR A . n C 3 181 HIS 181 236 236 HIS HIS A . n C 3 182 SER 182 237 237 SER SER A . n C 3 183 LEU 183 238 238 LEU LEU A . n C 3 184 PRO 184 239 239 PRO PRO A . n C 3 185 VAL 185 240 240 VAL VAL A . n C 3 186 ARG 186 241 241 ARG ARG A . n C 3 187 LYS 187 242 242 LYS LYS A . n C 3 188 LYS 188 243 243 LYS LYS A . n C 3 189 VAL 189 244 244 VAL VAL A . n C 3 190 LEU 190 245 245 LEU LEU A . n C 3 191 ALA 191 246 246 ALA ALA A . n C 3 192 PRO 192 247 247 PRO PRO A . n C 3 193 ARG 193 248 248 ARG ARG A . n C 3 194 VAL 194 249 249 VAL VAL A . n C 3 195 ASN 195 250 250 ASN ASN A . n C 3 196 LEU 196 251 251 LEU LEU A . n C 3 197 THR 197 252 252 THR THR A . n C 3 198 PHE 198 253 253 PHE PHE A . n C 3 199 ARG 199 254 254 ARG ARG A . n C 3 200 LYS 200 255 255 LYS LYS A . n C 3 201 ILE 201 256 256 ILE ILE A . n C 3 202 LEU 202 257 257 LEU LEU A . n C 3 203 LEU 203 258 258 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 XL3 1 14 1 XL3 XL3 B . E 5 MN 1 1 1 MN MN A . F 6 AKG 1 259 1 AKG AKG A . G 7 HOH 1 20 20 HOH HOH C . G 7 HOH 2 27 27 HOH HOH C . G 7 HOH 3 28 28 HOH HOH C . G 7 HOH 4 29 29 HOH HOH C . G 7 HOH 5 32 32 HOH HOH C . H 7 HOH 1 260 1 HOH HOH A . H 7 HOH 2 261 2 HOH HOH A . H 7 HOH 3 262 3 HOH HOH A . H 7 HOH 4 263 4 HOH HOH A . H 7 HOH 5 264 5 HOH HOH A . H 7 HOH 6 265 6 HOH HOH A . H 7 HOH 7 266 7 HOH HOH A . H 7 HOH 8 267 8 HOH HOH A . H 7 HOH 9 268 9 HOH HOH A . H 7 HOH 10 269 10 HOH HOH A . H 7 HOH 11 270 11 HOH HOH A . H 7 HOH 12 271 12 HOH HOH A . H 7 HOH 13 272 13 HOH HOH A . H 7 HOH 14 273 14 HOH HOH A . H 7 HOH 15 274 15 HOH HOH A . H 7 HOH 16 275 16 HOH HOH A . H 7 HOH 17 276 17 HOH HOH A . H 7 HOH 18 277 18 HOH HOH A . H 7 HOH 19 278 19 HOH HOH A . H 7 HOH 20 279 21 HOH HOH A . H 7 HOH 21 280 22 HOH HOH A . H 7 HOH 22 281 23 HOH HOH A . H 7 HOH 23 282 24 HOH HOH A . H 7 HOH 24 283 25 HOH HOH A . H 7 HOH 25 284 26 HOH HOH A . H 7 HOH 26 285 30 HOH HOH A . H 7 HOH 27 286 31 HOH HOH A . H 7 HOH 28 287 33 HOH HOH A . H 7 HOH 29 288 34 HOH HOH A . H 7 HOH 30 289 35 HOH HOH A . H 7 HOH 31 290 36 HOH HOH A . H 7 HOH 32 291 37 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 PHASES phasing . ? 4 # _cell.entry_id 3BUC _cell.length_a 77.910 _cell.length_b 77.910 _cell.length_c 226.558 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BUC _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3BUC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_percent_sol 61.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;8% PEG 8000, 0.1M sodium chloride, 0.05M magnesium chloride, 0.1M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 'sodium chloride' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 cacodylate ? ? ? 1 5 2 'PEG 8000' ? ? ? 1 6 2 'sodium chloride' ? ? ? 1 7 2 'magnesium chloride' ? ? ? 1 8 2 cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2007-10-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9717 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9717 # _reflns.entry_id 3BUC _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.59 _reflns.d_resolution_low 50 _reflns.number_all 13373 _reflns.number_obs 13373 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.59 _reflns_shell.d_res_low 2.63 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.677 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 649 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BUC _refine.ls_number_reflns_obs 12394 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.59 _refine.ls_percent_reflns_obs 97.42 _refine.ls_R_factor_obs 0.2504 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24848 _refine.ls_R_factor_R_free 0.28673 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 654 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.922 _refine.correlation_coeff_Fo_to_Fc_free 0.904 _refine.B_iso_mean 46.994 _refine.aniso_B[1][1] -1.67 _refine.aniso_B[2][2] -1.67 _refine.aniso_B[3][3] 2.50 _refine.aniso_B[1][2] -0.83 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.515 _refine.pdbx_overall_ESU_R_Free 0.321 _refine.overall_SU_ML 0.263 _refine.overall_SU_B 25.480 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1617 _refine_hist.pdbx_number_atoms_nucleic_acid 526 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 2195 _refine_hist.d_res_high 2.59 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 2263 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.279 2.248 ? 3170 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.710 5.000 ? 198 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.165 21.519 ? 79 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.343 15.000 ? 275 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.424 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.072 0.200 ? 344 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1556 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.195 0.200 ? 892 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 1447 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.166 0.200 ? 95 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.195 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.129 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.265 1.500 ? 1016 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.480 2.000 ? 1614 'X-RAY DIFFRACTION' ? r_scbond_it 0.777 3.000 ? 1582 'X-RAY DIFFRACTION' ? r_scangle_it 1.354 4.500 ? 1556 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.590 _refine_ls_shell.d_res_low 2.656 _refine_ls_shell.number_reflns_R_work 882 _refine_ls_shell.R_factor_R_work 0.409 _refine_ls_shell.percent_reflns_obs 99.68 _refine_ls_shell.R_factor_R_free 0.493 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3BUC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3BUC _struct.title 'X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BUC _struct_keywords.pdbx_keywords Oxidoreductase/DNA _struct_keywords.text ;protein/DNA interaction, human dioxygenase, DNA repair, cross-link, DNA damage, Iron, Metal-binding, Nucleus, Oxidoreductase, Oxidoreductase-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 3 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; 56 ? 2 PDB 3BUC 3BUC 1 CTGTATAACTGCG ? ? 3 PDB 3BUC 3BUC 2 TCGCAGTTATACA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BUC A 1 ? 203 ? Q6NS38 56 ? 258 ? 56 258 2 2 3BUC B 1 ? 13 ? 3BUC 1 ? 13 ? 1 13 3 3 3BUC C 1 ? 13 ? 3BUC 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BUC SER A 12 ? UNP Q6NS38 CYS 67 'engineered mutation' 67 1 1 3BUC SER A 110 ? UNP Q6NS38 CYS 165 'engineered mutation' 165 2 1 3BUC CYS A 114 ? UNP Q6NS38 GLY 169 'engineered mutation' 169 3 1 3BUC SER A 137 ? UNP Q6NS38 CYS 192 'engineered mutation' 192 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4390 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 19 ? VAL C 34 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 THR C 38 ? LEU C 41 ? THR A 93 LEU A 96 5 ? 4 HELX_P HELX_P3 3 ILE C 80 ? GLY C 95 ? ILE A 135 GLY A 150 1 ? 16 HELX_P HELX_P4 4 ASP C 146 ? ARG C 148 ? ASP A 201 ARG A 203 5 ? 3 HELX_P HELX_P5 5 PRO C 174 ? HIS C 178 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 6 "O3'" ? ? ? 1_555 A MA7 7 P ? ? B DT 6 B MA7 7 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? A MA7 7 "O3'" ? ? ? 1_555 A DA 8 P ? ? B MA7 7 B DA 8 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale3 covale none ? A DC 9 N4 ? ? ? 1_555 D XL3 . CA ? ? B DC 9 B XL3 14 1_555 ? ? ? ? ? ? ? 1.474 ? ? covale4 covale none ? D XL3 . SG ? ? ? 1_555 C CYS 114 SG ? ? B XL3 14 A CYS 169 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc1 metalc ? ? E MN . MN ? ? ? 1_555 C ASP 118 OD2 ? ? A MN 1 A ASP 173 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc2 metalc ? ? E MN . MN ? ? ? 1_555 F AKG . O5 ? ? A MN 1 A AKG 259 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc3 metalc ? ? E MN . MN ? ? ? 1_555 F AKG . O1 ? ? A MN 1 A AKG 259 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc4 metalc ? ? E MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 1 A HOH 270 1_555 ? ? ? ? ? ? ? 1.868 ? ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 12 N3 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 12 O2 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 12 N4 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 11 N1 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 11 N6 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 5 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 5 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DT 8 O4 ? ? B DT 6 C DT 8 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog10 hydrog ? ? A DT 6 O2 ? ? ? 1_555 B DT 8 N3 ? ? B DT 6 C DT 8 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 6 N1 ? ? B DC 9 C DG 6 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog14 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 12 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 12 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 12 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 13 O6 ? ? B DC 1 B DG 13 8_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog26 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DC 1 N4 ? ? B DG 13 B DC 1 8_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? C ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 1 ? 1_555 O5 ? F AKG . ? A AKG 259 ? 1_555 170.2 ? 2 OD2 ? C ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 1 ? 1_555 O1 ? F AKG . ? A AKG 259 ? 1_555 110.2 ? 3 O5 ? F AKG . ? A AKG 259 ? 1_555 MN ? E MN . ? A MN 1 ? 1_555 O1 ? F AKG . ? A AKG 259 ? 1_555 72.9 ? 4 OD2 ? C ASP 118 ? A ASP 173 ? 1_555 MN ? E MN . ? A MN 1 ? 1_555 O ? H HOH . ? A HOH 270 ? 1_555 84.2 ? 5 O5 ? F AKG . ? A AKG 259 ? 1_555 MN ? E MN . ? A MN 1 ? 1_555 O ? H HOH . ? A HOH 270 ? 1_555 87.0 ? 6 O1 ? F AKG . ? A AKG 259 ? 1_555 MN ? E MN . ? A MN 1 ? 1_555 O ? H HOH . ? A HOH 270 ? 1_555 83.5 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id XL3 _pdbx_modification_feature.label_asym_id D _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id C _pdbx_modification_feature.modified_residue_label_seq_id 114 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id XL3 _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 14 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 169 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id XL3 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 173 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 174 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG C 3 ? ALA C 7 ? ARG A 58 ALA A 62 A 2 LEU C 10 ? VAL C 16 ? LEU A 65 VAL A 71 A 3 SER C 167 ? MET C 171 ? SER A 222 MET A 226 A 4 ILE C 129 ? GLY C 135 ? ILE A 184 GLY A 190 A 5 ARG C 193 ? ARG C 199 ? ARG A 248 ARG A 254 A 6 PHE C 100 ? TYR C 106 ? PHE A 155 TYR A 161 A 7 LYS C 56 ? GLY C 61 ? LYS A 111 GLY A 116 B 1 ARG C 43 ? VAL C 46 ? ARG A 98 VAL A 101 B 2 LYS C 49 ? SER C 52 ? LYS A 104 SER A 107 C 1 TYR C 67 ? PHE C 69 ? TYR A 122 PHE A 124 C 2 LEU C 72 ? LEU C 74 ? LEU A 127 LEU A 129 D 1 ILE C 113 ? HIS C 116 ? ILE A 168 HIS A 171 D 2 TRP C 179 ? LEU C 183 ? TRP A 234 LEU A 238 D 3 ARG C 138 ? HIS C 144 ? ARG A 193 HIS A 199 D 4 VAL C 159 ? LEU C 163 ? VAL A 214 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG C 3 ? N ARG A 58 O TYR C 14 ? O TYR A 69 A 2 3 N SER C 13 ? N SER A 68 O MET C 170 ? O MET A 225 A 3 4 O LEU C 169 ? O LEU A 224 N SER C 131 ? N SER A 186 A 4 5 N VAL C 132 ? N VAL A 187 O LEU C 196 ? O LEU A 251 A 5 6 O ASN C 195 ? O ASN A 250 N ASN C 104 ? N ASN A 159 A 6 7 O ILE C 103 ? O ILE A 158 N ALA C 58 ? N ALA A 113 B 1 2 N VAL C 46 ? N VAL A 101 O LYS C 49 ? O LYS A 104 C 1 2 N TYR C 67 ? N TYR A 122 O LEU C 74 ? O LEU A 129 D 1 2 N HIS C 116 ? N HIS A 171 O HIS C 181 ? O HIS A 236 D 2 3 O TYR C 180 ? O TYR A 235 N ARG C 143 ? N ARG A 198 D 3 4 N PHE C 142 ? N PHE A 197 O VAL C 159 ? O VAL A 214 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 1 ? 4 'BINDING SITE FOR RESIDUE MN A 1' AC2 Software B XL3 14 ? 4 'BINDING SITE FOR RESIDUE XL3 B 14' AC3 Software A AKG 259 ? 12 'BINDING SITE FOR RESIDUE AKG A 259' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS C 116 ? HIS A 171 . ? 1_555 ? 2 AC1 4 ASP C 118 ? ASP A 173 . ? 1_555 ? 3 AC1 4 HIS C 181 ? HIS A 236 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH A 270 . ? 1_555 ? 5 AC2 4 CYS C 114 ? CYS A 169 . ? 1_555 ? 6 AC2 4 DA A 8 ? DA B 8 . ? 1_555 ? 7 AC2 4 DC A 9 ? DC B 9 . ? 1_555 ? 8 AC2 4 DG B 6 ? DG C 6 . ? 1_555 ? 9 AC3 12 LEU C 102 ? LEU A 157 . ? 1_555 ? 10 AC3 12 ASN C 104 ? ASN A 159 . ? 1_555 ? 11 AC3 12 TYR C 106 ? TYR A 161 . ? 1_555 ? 12 AC3 12 HIS C 116 ? HIS A 171 . ? 1_555 ? 13 AC3 12 ASP C 118 ? ASP A 173 . ? 1_555 ? 14 AC3 12 PHE C 140 ? PHE A 195 . ? 1_555 ? 15 AC3 12 HIS C 181 ? HIS A 236 . ? 1_555 ? 16 AC3 12 ARG C 193 ? ARG A 248 . ? 1_555 ? 17 AC3 12 ASN C 195 ? ASN A 250 . ? 1_555 ? 18 AC3 12 THR C 197 ? THR A 252 . ? 1_555 ? 19 AC3 12 ARG C 199 ? ARG A 254 . ? 1_555 ? 20 AC3 12 HOH H . ? HOH A 270 . ? 1_555 ? # _pdbx_entry_details.entry_id 3BUC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 C DT 8 ? ? O C HOH 28 ? ? 2.16 2 1 OP1 C DT 8 ? ? O C HOH 29 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 110.23 108.30 1.93 0.30 N 2 1 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.57 108.30 2.27 0.30 N 3 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 110.65 108.30 2.35 0.30 N 4 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.44 108.30 2.14 0.30 N 5 1 "C3'" C DG 3 ? ? "C2'" C DG 3 ? ? "C1'" C DG 3 ? ? 96.93 102.40 -5.47 0.80 N 6 1 "O4'" C DC 4 ? ? "C1'" C DC 4 ? ? N1 C DC 4 ? ? 110.27 108.30 1.97 0.30 N 7 1 "O4'" C DT 7 ? ? "C1'" C DT 7 ? ? N1 C DT 7 ? ? 112.20 108.30 3.90 0.30 N 8 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 110.27 108.30 1.97 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 63 ? ? -53.40 105.08 2 1 ARG A 110 ? ? 179.00 -169.05 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MA7 _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id MA7 _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details "1N-METHYLADENOSINE-5'-MONOPHOSPHATE" # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -19.0414 27.1585 3.4167 -0.1212 -0.0837 -0.0185 -0.0357 0.0399 -0.0588 6.4997 3.4984 3.1932 -1.5488 0.6638 0.7269 0.1904 -0.5740 -0.1145 0.5211 -0.0572 0.2472 0.2025 -0.1954 -0.1332 'X-RAY DIFFRACTION' 2 ? refined -3.8017 9.9477 3.8102 0.0048 0.2572 -0.0493 -0.0683 -0.2019 -0.1794 0.2860 9.8193 0.4765 -1.2984 0.1182 -1.8321 0.3441 0.2799 -0.3341 -0.2940 -0.1925 0.0755 0.3857 0.2216 -0.1515 'X-RAY DIFFRACTION' 3 ? refined -3.1399 12.5084 2.9153 0.3191 -0.0019 0.0123 0.1154 -0.1596 -0.1138 3.6146 2.8326 26.6515 -0.9134 9.2848 0.3537 1.3441 0.4104 -0.7444 0.0585 -0.0685 -0.3923 1.3151 1.0749 -1.2756 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 56 C 1 A 258 C 203 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 A 1 B 13 A 13 ? 'X-RAY DIFFRACTION' ? 3 3 C 1 B 1 C 13 B 13 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 204 ? C GLY 149 2 1 Y 1 A LYS 205 ? C LYS 150 3 1 Y 1 A SER 206 ? C SER 151 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AKG C1 C N N 1 AKG O1 O N N 2 AKG O2 O N N 3 AKG C2 C N N 4 AKG O5 O N N 5 AKG C3 C N N 6 AKG C4 C N N 7 AKG C5 C N N 8 AKG O3 O N N 9 AKG O4 O N N 10 AKG HO2 H N N 11 AKG H31 H N N 12 AKG H32 H N N 13 AKG H41 H N N 14 AKG H42 H N N 15 AKG HO4 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ARG N N N N 30 ARG CA C N S 31 ARG C C N N 32 ARG O O N N 33 ARG CB C N N 34 ARG CG C N N 35 ARG CD C N N 36 ARG NE N N N 37 ARG CZ C N N 38 ARG NH1 N N N 39 ARG NH2 N N N 40 ARG OXT O N N 41 ARG H H N N 42 ARG H2 H N N 43 ARG HA H N N 44 ARG HB2 H N N 45 ARG HB3 H N N 46 ARG HG2 H N N 47 ARG HG3 H N N 48 ARG HD2 H N N 49 ARG HD3 H N N 50 ARG HE H N N 51 ARG HH11 H N N 52 ARG HH12 H N N 53 ARG HH21 H N N 54 ARG HH22 H N N 55 ARG HXT H N N 56 ASN N N N N 57 ASN CA C N S 58 ASN C C N N 59 ASN O O N N 60 ASN CB C N N 61 ASN CG C N N 62 ASN OD1 O N N 63 ASN ND2 N N N 64 ASN OXT O N N 65 ASN H H N N 66 ASN H2 H N N 67 ASN HA H N N 68 ASN HB2 H N N 69 ASN HB3 H N N 70 ASN HD21 H N N 71 ASN HD22 H N N 72 ASN HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 DA OP3 O N N 104 DA P P N N 105 DA OP1 O N N 106 DA OP2 O N N 107 DA "O5'" O N N 108 DA "C5'" C N N 109 DA "C4'" C N R 110 DA "O4'" O N N 111 DA "C3'" C N S 112 DA "O3'" O N N 113 DA "C2'" C N N 114 DA "C1'" C N R 115 DA N9 N Y N 116 DA C8 C Y N 117 DA N7 N Y N 118 DA C5 C Y N 119 DA C6 C Y N 120 DA N6 N N N 121 DA N1 N Y N 122 DA C2 C Y N 123 DA N3 N Y N 124 DA C4 C Y N 125 DA HOP3 H N N 126 DA HOP2 H N N 127 DA "H5'" H N N 128 DA "H5''" H N N 129 DA "H4'" H N N 130 DA "H3'" H N N 131 DA "HO3'" H N N 132 DA "H2'" H N N 133 DA "H2''" H N N 134 DA "H1'" H N N 135 DA H8 H N N 136 DA H61 H N N 137 DA H62 H N N 138 DA H2 H N N 139 DC OP3 O N N 140 DC P P N N 141 DC OP1 O N N 142 DC OP2 O N N 143 DC "O5'" O N N 144 DC "C5'" C N N 145 DC "C4'" C N R 146 DC "O4'" O N N 147 DC "C3'" C N S 148 DC "O3'" O N N 149 DC "C2'" C N N 150 DC "C1'" C N R 151 DC N1 N N N 152 DC C2 C N N 153 DC O2 O N N 154 DC N3 N N N 155 DC C4 C N N 156 DC N4 N N N 157 DC C5 C N N 158 DC C6 C N N 159 DC HOP3 H N N 160 DC HOP2 H N N 161 DC "H5'" H N N 162 DC "H5''" H N N 163 DC "H4'" H N N 164 DC "H3'" H N N 165 DC "HO3'" H N N 166 DC "H2'" H N N 167 DC "H2''" H N N 168 DC "H1'" H N N 169 DC H41 H N N 170 DC H42 H N N 171 DC H5 H N N 172 DC H6 H N N 173 DG OP3 O N N 174 DG P P N N 175 DG OP1 O N N 176 DG OP2 O N N 177 DG "O5'" O N N 178 DG "C5'" C N N 179 DG "C4'" C N R 180 DG "O4'" O N N 181 DG "C3'" C N S 182 DG "O3'" O N N 183 DG "C2'" C N N 184 DG "C1'" C N R 185 DG N9 N Y N 186 DG C8 C Y N 187 DG N7 N Y N 188 DG C5 C Y N 189 DG C6 C N N 190 DG O6 O N N 191 DG N1 N N N 192 DG C2 C N N 193 DG N2 N N N 194 DG N3 N N N 195 DG C4 C Y N 196 DG HOP3 H N N 197 DG HOP2 H N N 198 DG "H5'" H N N 199 DG "H5''" H N N 200 DG "H4'" H N N 201 DG "H3'" H N N 202 DG "HO3'" H N N 203 DG "H2'" H N N 204 DG "H2''" H N N 205 DG "H1'" H N N 206 DG H8 H N N 207 DG H1 H N N 208 DG H21 H N N 209 DG H22 H N N 210 DT OP3 O N N 211 DT P P N N 212 DT OP1 O N N 213 DT OP2 O N N 214 DT "O5'" O N N 215 DT "C5'" C N N 216 DT "C4'" C N R 217 DT "O4'" O N N 218 DT "C3'" C N S 219 DT "O3'" O N N 220 DT "C2'" C N N 221 DT "C1'" C N R 222 DT N1 N N N 223 DT C2 C N N 224 DT O2 O N N 225 DT N3 N N N 226 DT C4 C N N 227 DT O4 O N N 228 DT C5 C N N 229 DT C7 C N N 230 DT C6 C N N 231 DT HOP3 H N N 232 DT HOP2 H N N 233 DT "H5'" H N N 234 DT "H5''" H N N 235 DT "H4'" H N N 236 DT "H3'" H N N 237 DT "HO3'" H N N 238 DT "H2'" H N N 239 DT "H2''" H N N 240 DT "H1'" H N N 241 DT H3 H N N 242 DT H71 H N N 243 DT H72 H N N 244 DT H73 H N N 245 DT H6 H N N 246 GLN N N N N 247 GLN CA C N S 248 GLN C C N N 249 GLN O O N N 250 GLN CB C N N 251 GLN CG C N N 252 GLN CD C N N 253 GLN OE1 O N N 254 GLN NE2 N N N 255 GLN OXT O N N 256 GLN H H N N 257 GLN H2 H N N 258 GLN HA H N N 259 GLN HB2 H N N 260 GLN HB3 H N N 261 GLN HG2 H N N 262 GLN HG3 H N N 263 GLN HE21 H N N 264 GLN HE22 H N N 265 GLN HXT H N N 266 GLU N N N N 267 GLU CA C N S 268 GLU C C N N 269 GLU O O N N 270 GLU CB C N N 271 GLU CG C N N 272 GLU CD C N N 273 GLU OE1 O N N 274 GLU OE2 O N N 275 GLU OXT O N N 276 GLU H H N N 277 GLU H2 H N N 278 GLU HA H N N 279 GLU HB2 H N N 280 GLU HB3 H N N 281 GLU HG2 H N N 282 GLU HG3 H N N 283 GLU HE2 H N N 284 GLU HXT H N N 285 GLY N N N N 286 GLY CA C N N 287 GLY C C N N 288 GLY O O N N 289 GLY OXT O N N 290 GLY H H N N 291 GLY H2 H N N 292 GLY HA2 H N N 293 GLY HA3 H N N 294 GLY HXT H N N 295 HIS N N N N 296 HIS CA C N S 297 HIS C C N N 298 HIS O O N N 299 HIS CB C N N 300 HIS CG C Y N 301 HIS ND1 N Y N 302 HIS CD2 C Y N 303 HIS CE1 C Y N 304 HIS NE2 N Y N 305 HIS OXT O N N 306 HIS H H N N 307 HIS H2 H N N 308 HIS HA H N N 309 HIS HB2 H N N 310 HIS HB3 H N N 311 HIS HD1 H N N 312 HIS HD2 H N N 313 HIS HE1 H N N 314 HIS HE2 H N N 315 HIS HXT H N N 316 HOH O O N N 317 HOH H1 H N N 318 HOH H2 H N N 319 ILE N N N N 320 ILE CA C N S 321 ILE C C N N 322 ILE O O N N 323 ILE CB C N S 324 ILE CG1 C N N 325 ILE CG2 C N N 326 ILE CD1 C N N 327 ILE OXT O N N 328 ILE H H N N 329 ILE H2 H N N 330 ILE HA H N N 331 ILE HB H N N 332 ILE HG12 H N N 333 ILE HG13 H N N 334 ILE HG21 H N N 335 ILE HG22 H N N 336 ILE HG23 H N N 337 ILE HD11 H N N 338 ILE HD12 H N N 339 ILE HD13 H N N 340 ILE HXT H N N 341 LEU N N N N 342 LEU CA C N S 343 LEU C C N N 344 LEU O O N N 345 LEU CB C N N 346 LEU CG C N N 347 LEU CD1 C N N 348 LEU CD2 C N N 349 LEU OXT O N N 350 LEU H H N N 351 LEU H2 H N N 352 LEU HA H N N 353 LEU HB2 H N N 354 LEU HB3 H N N 355 LEU HG H N N 356 LEU HD11 H N N 357 LEU HD12 H N N 358 LEU HD13 H N N 359 LEU HD21 H N N 360 LEU HD22 H N N 361 LEU HD23 H N N 362 LEU HXT H N N 363 LYS N N N N 364 LYS CA C N S 365 LYS C C N N 366 LYS O O N N 367 LYS CB C N N 368 LYS CG C N N 369 LYS CD C N N 370 LYS CE C N N 371 LYS NZ N N N 372 LYS OXT O N N 373 LYS H H N N 374 LYS H2 H N N 375 LYS HA H N N 376 LYS HB2 H N N 377 LYS HB3 H N N 378 LYS HG2 H N N 379 LYS HG3 H N N 380 LYS HD2 H N N 381 LYS HD3 H N N 382 LYS HE2 H N N 383 LYS HE3 H N N 384 LYS HZ1 H N N 385 LYS HZ2 H N N 386 LYS HZ3 H N N 387 LYS HXT H N N 388 MA7 C2 C Y N 389 MA7 C4 C Y N 390 MA7 C5 C Y N 391 MA7 C6 C Y N 392 MA7 C8 C Y N 393 MA7 P P N N 394 MA7 OP1 O N N 395 MA7 OP2 O N N 396 MA7 "O5'" O N N 397 MA7 N9 N Y N 398 MA7 N3 N Y N 399 MA7 N1 N Y N 400 MA7 N6 N N N 401 MA7 N7 N Y N 402 MA7 CN C N N 403 MA7 "C2'" C N N 404 MA7 "C5'" C N N 405 MA7 "C4'" C N R 406 MA7 "O4'" O N N 407 MA7 "C1'" C N R 408 MA7 "C3'" C N S 409 MA7 "O3'" O N N 410 MA7 OP3 O N N 411 MA7 H2 H N N 412 MA7 H8 H N N 413 MA7 HOP2 H N N 414 MA7 H61 H N N 415 MA7 H62 H N N 416 MA7 HN1 H N N 417 MA7 HN2 H N N 418 MA7 HN3 H N N 419 MA7 "H2'" H N N 420 MA7 "H2''" H N N 421 MA7 "H5'" H N N 422 MA7 "H5''" H N N 423 MA7 "H4'" H N N 424 MA7 "H1'" H N N 425 MA7 "H3'" H N N 426 MA7 "HO3'" H N N 427 MA7 HOP3 H N N 428 MET N N N N 429 MET CA C N S 430 MET C C N N 431 MET O O N N 432 MET CB C N N 433 MET CG C N N 434 MET SD S N N 435 MET CE C N N 436 MET OXT O N N 437 MET H H N N 438 MET H2 H N N 439 MET HA H N N 440 MET HB2 H N N 441 MET HB3 H N N 442 MET HG2 H N N 443 MET HG3 H N N 444 MET HE1 H N N 445 MET HE2 H N N 446 MET HE3 H N N 447 MET HXT H N N 448 MN MN MN N N 449 PHE N N N N 450 PHE CA C N S 451 PHE C C N N 452 PHE O O N N 453 PHE CB C N N 454 PHE CG C Y N 455 PHE CD1 C Y N 456 PHE CD2 C Y N 457 PHE CE1 C Y N 458 PHE CE2 C Y N 459 PHE CZ C Y N 460 PHE OXT O N N 461 PHE H H N N 462 PHE H2 H N N 463 PHE HA H N N 464 PHE HB2 H N N 465 PHE HB3 H N N 466 PHE HD1 H N N 467 PHE HD2 H N N 468 PHE HE1 H N N 469 PHE HE2 H N N 470 PHE HZ H N N 471 PHE HXT H N N 472 PRO N N N N 473 PRO CA C N S 474 PRO C C N N 475 PRO O O N N 476 PRO CB C N N 477 PRO CG C N N 478 PRO CD C N N 479 PRO OXT O N N 480 PRO H H N N 481 PRO HA H N N 482 PRO HB2 H N N 483 PRO HB3 H N N 484 PRO HG2 H N N 485 PRO HG3 H N N 486 PRO HD2 H N N 487 PRO HD3 H N N 488 PRO HXT H N N 489 SER N N N N 490 SER CA C N S 491 SER C C N N 492 SER O O N N 493 SER CB C N N 494 SER OG O N N 495 SER OXT O N N 496 SER H H N N 497 SER H2 H N N 498 SER HA H N N 499 SER HB2 H N N 500 SER HB3 H N N 501 SER HG H N N 502 SER HXT H N N 503 THR N N N N 504 THR CA C N S 505 THR C C N N 506 THR O O N N 507 THR CB C N R 508 THR OG1 O N N 509 THR CG2 C N N 510 THR OXT O N N 511 THR H H N N 512 THR H2 H N N 513 THR HA H N N 514 THR HB H N N 515 THR HG1 H N N 516 THR HG21 H N N 517 THR HG22 H N N 518 THR HG23 H N N 519 THR HXT H N N 520 TRP N N N N 521 TRP CA C N S 522 TRP C C N N 523 TRP O O N N 524 TRP CB C N N 525 TRP CG C Y N 526 TRP CD1 C Y N 527 TRP CD2 C Y N 528 TRP NE1 N Y N 529 TRP CE2 C Y N 530 TRP CE3 C Y N 531 TRP CZ2 C Y N 532 TRP CZ3 C Y N 533 TRP CH2 C Y N 534 TRP OXT O N N 535 TRP H H N N 536 TRP H2 H N N 537 TRP HA H N N 538 TRP HB2 H N N 539 TRP HB3 H N N 540 TRP HD1 H N N 541 TRP HE1 H N N 542 TRP HE3 H N N 543 TRP HZ2 H N N 544 TRP HZ3 H N N 545 TRP HH2 H N N 546 TRP HXT H N N 547 TYR N N N N 548 TYR CA C N S 549 TYR C C N N 550 TYR O O N N 551 TYR CB C N N 552 TYR CG C Y N 553 TYR CD1 C Y N 554 TYR CD2 C Y N 555 TYR CE1 C Y N 556 TYR CE2 C Y N 557 TYR CZ C Y N 558 TYR OH O N N 559 TYR OXT O N N 560 TYR H H N N 561 TYR H2 H N N 562 TYR HA H N N 563 TYR HB2 H N N 564 TYR HB3 H N N 565 TYR HD1 H N N 566 TYR HD2 H N N 567 TYR HE1 H N N 568 TYR HE2 H N N 569 TYR HH H N N 570 TYR HXT H N N 571 VAL N N N N 572 VAL CA C N S 573 VAL C C N N 574 VAL O O N N 575 VAL CB C N N 576 VAL CG1 C N N 577 VAL CG2 C N N 578 VAL OXT O N N 579 VAL H H N N 580 VAL H2 H N N 581 VAL HA H N N 582 VAL HB H N N 583 VAL HG11 H N N 584 VAL HG12 H N N 585 VAL HG13 H N N 586 VAL HG21 H N N 587 VAL HG22 H N N 588 VAL HG23 H N N 589 VAL HXT H N N 590 XL3 CA C N N 591 XL3 CB C N N 592 XL3 CC C N N 593 XL3 SG S N N 594 XL3 HA H N N 595 XL3 HAA H N N 596 XL3 HAB H N N 597 XL3 HB H N N 598 XL3 HBA H N N 599 XL3 HC H N N 600 XL3 HCA H N N 601 XL3 HSG H N N 602 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKG C1 O1 doub N N 1 AKG C1 O2 sing N N 2 AKG C1 C2 sing N N 3 AKG O2 HO2 sing N N 4 AKG C2 O5 doub N N 5 AKG C2 C3 sing N N 6 AKG C3 C4 sing N N 7 AKG C3 H31 sing N N 8 AKG C3 H32 sing N N 9 AKG C4 C5 sing N N 10 AKG C4 H41 sing N N 11 AKG C4 H42 sing N N 12 AKG C5 O3 doub N N 13 AKG C5 O4 sing N N 14 AKG O4 HO4 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ARG N CA sing N N 28 ARG N H sing N N 29 ARG N H2 sing N N 30 ARG CA C sing N N 31 ARG CA CB sing N N 32 ARG CA HA sing N N 33 ARG C O doub N N 34 ARG C OXT sing N N 35 ARG CB CG sing N N 36 ARG CB HB2 sing N N 37 ARG CB HB3 sing N N 38 ARG CG CD sing N N 39 ARG CG HG2 sing N N 40 ARG CG HG3 sing N N 41 ARG CD NE sing N N 42 ARG CD HD2 sing N N 43 ARG CD HD3 sing N N 44 ARG NE CZ sing N N 45 ARG NE HE sing N N 46 ARG CZ NH1 sing N N 47 ARG CZ NH2 doub N N 48 ARG NH1 HH11 sing N N 49 ARG NH1 HH12 sing N N 50 ARG NH2 HH21 sing N N 51 ARG NH2 HH22 sing N N 52 ARG OXT HXT sing N N 53 ASN N CA sing N N 54 ASN N H sing N N 55 ASN N H2 sing N N 56 ASN CA C sing N N 57 ASN CA CB sing N N 58 ASN CA HA sing N N 59 ASN C O doub N N 60 ASN C OXT sing N N 61 ASN CB CG sing N N 62 ASN CB HB2 sing N N 63 ASN CB HB3 sing N N 64 ASN CG OD1 doub N N 65 ASN CG ND2 sing N N 66 ASN ND2 HD21 sing N N 67 ASN ND2 HD22 sing N N 68 ASN OXT HXT sing N N 69 ASP N CA sing N N 70 ASP N H sing N N 71 ASP N H2 sing N N 72 ASP CA C sing N N 73 ASP CA CB sing N N 74 ASP CA HA sing N N 75 ASP C O doub N N 76 ASP C OXT sing N N 77 ASP CB CG sing N N 78 ASP CB HB2 sing N N 79 ASP CB HB3 sing N N 80 ASP CG OD1 doub N N 81 ASP CG OD2 sing N N 82 ASP OD2 HD2 sing N N 83 ASP OXT HXT sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 DA OP3 P sing N N 98 DA OP3 HOP3 sing N N 99 DA P OP1 doub N N 100 DA P OP2 sing N N 101 DA P "O5'" sing N N 102 DA OP2 HOP2 sing N N 103 DA "O5'" "C5'" sing N N 104 DA "C5'" "C4'" sing N N 105 DA "C5'" "H5'" sing N N 106 DA "C5'" "H5''" sing N N 107 DA "C4'" "O4'" sing N N 108 DA "C4'" "C3'" sing N N 109 DA "C4'" "H4'" sing N N 110 DA "O4'" "C1'" sing N N 111 DA "C3'" "O3'" sing N N 112 DA "C3'" "C2'" sing N N 113 DA "C3'" "H3'" sing N N 114 DA "O3'" "HO3'" sing N N 115 DA "C2'" "C1'" sing N N 116 DA "C2'" "H2'" sing N N 117 DA "C2'" "H2''" sing N N 118 DA "C1'" N9 sing N N 119 DA "C1'" "H1'" sing N N 120 DA N9 C8 sing Y N 121 DA N9 C4 sing Y N 122 DA C8 N7 doub Y N 123 DA C8 H8 sing N N 124 DA N7 C5 sing Y N 125 DA C5 C6 sing Y N 126 DA C5 C4 doub Y N 127 DA C6 N6 sing N N 128 DA C6 N1 doub Y N 129 DA N6 H61 sing N N 130 DA N6 H62 sing N N 131 DA N1 C2 sing Y N 132 DA C2 N3 doub Y N 133 DA C2 H2 sing N N 134 DA N3 C4 sing Y N 135 DC OP3 P sing N N 136 DC OP3 HOP3 sing N N 137 DC P OP1 doub N N 138 DC P OP2 sing N N 139 DC P "O5'" sing N N 140 DC OP2 HOP2 sing N N 141 DC "O5'" "C5'" sing N N 142 DC "C5'" "C4'" sing N N 143 DC "C5'" "H5'" sing N N 144 DC "C5'" "H5''" sing N N 145 DC "C4'" "O4'" sing N N 146 DC "C4'" "C3'" sing N N 147 DC "C4'" "H4'" sing N N 148 DC "O4'" "C1'" sing N N 149 DC "C3'" "O3'" sing N N 150 DC "C3'" "C2'" sing N N 151 DC "C3'" "H3'" sing N N 152 DC "O3'" "HO3'" sing N N 153 DC "C2'" "C1'" sing N N 154 DC "C2'" "H2'" sing N N 155 DC "C2'" "H2''" sing N N 156 DC "C1'" N1 sing N N 157 DC "C1'" "H1'" sing N N 158 DC N1 C2 sing N N 159 DC N1 C6 sing N N 160 DC C2 O2 doub N N 161 DC C2 N3 sing N N 162 DC N3 C4 doub N N 163 DC C4 N4 sing N N 164 DC C4 C5 sing N N 165 DC N4 H41 sing N N 166 DC N4 H42 sing N N 167 DC C5 C6 doub N N 168 DC C5 H5 sing N N 169 DC C6 H6 sing N N 170 DG OP3 P sing N N 171 DG OP3 HOP3 sing N N 172 DG P OP1 doub N N 173 DG P OP2 sing N N 174 DG P "O5'" sing N N 175 DG OP2 HOP2 sing N N 176 DG "O5'" "C5'" sing N N 177 DG "C5'" "C4'" sing N N 178 DG "C5'" "H5'" sing N N 179 DG "C5'" "H5''" sing N N 180 DG "C4'" "O4'" sing N N 181 DG "C4'" "C3'" sing N N 182 DG "C4'" "H4'" sing N N 183 DG "O4'" "C1'" sing N N 184 DG "C3'" "O3'" sing N N 185 DG "C3'" "C2'" sing N N 186 DG "C3'" "H3'" sing N N 187 DG "O3'" "HO3'" sing N N 188 DG "C2'" "C1'" sing N N 189 DG "C2'" "H2'" sing N N 190 DG "C2'" "H2''" sing N N 191 DG "C1'" N9 sing N N 192 DG "C1'" "H1'" sing N N 193 DG N9 C8 sing Y N 194 DG N9 C4 sing Y N 195 DG C8 N7 doub Y N 196 DG C8 H8 sing N N 197 DG N7 C5 sing Y N 198 DG C5 C6 sing N N 199 DG C5 C4 doub Y N 200 DG C6 O6 doub N N 201 DG C6 N1 sing N N 202 DG N1 C2 sing N N 203 DG N1 H1 sing N N 204 DG C2 N2 sing N N 205 DG C2 N3 doub N N 206 DG N2 H21 sing N N 207 DG N2 H22 sing N N 208 DG N3 C4 sing N N 209 DT OP3 P sing N N 210 DT OP3 HOP3 sing N N 211 DT P OP1 doub N N 212 DT P OP2 sing N N 213 DT P "O5'" sing N N 214 DT OP2 HOP2 sing N N 215 DT "O5'" "C5'" sing N N 216 DT "C5'" "C4'" sing N N 217 DT "C5'" "H5'" sing N N 218 DT "C5'" "H5''" sing N N 219 DT "C4'" "O4'" sing N N 220 DT "C4'" "C3'" sing N N 221 DT "C4'" "H4'" sing N N 222 DT "O4'" "C1'" sing N N 223 DT "C3'" "O3'" sing N N 224 DT "C3'" "C2'" sing N N 225 DT "C3'" "H3'" sing N N 226 DT "O3'" "HO3'" sing N N 227 DT "C2'" "C1'" sing N N 228 DT "C2'" "H2'" sing N N 229 DT "C2'" "H2''" sing N N 230 DT "C1'" N1 sing N N 231 DT "C1'" "H1'" sing N N 232 DT N1 C2 sing N N 233 DT N1 C6 sing N N 234 DT C2 O2 doub N N 235 DT C2 N3 sing N N 236 DT N3 C4 sing N N 237 DT N3 H3 sing N N 238 DT C4 O4 doub N N 239 DT C4 C5 sing N N 240 DT C5 C7 sing N N 241 DT C5 C6 doub N N 242 DT C7 H71 sing N N 243 DT C7 H72 sing N N 244 DT C7 H73 sing N N 245 DT C6 H6 sing N N 246 GLN N CA sing N N 247 GLN N H sing N N 248 GLN N H2 sing N N 249 GLN CA C sing N N 250 GLN CA CB sing N N 251 GLN CA HA sing N N 252 GLN C O doub N N 253 GLN C OXT sing N N 254 GLN CB CG sing N N 255 GLN CB HB2 sing N N 256 GLN CB HB3 sing N N 257 GLN CG CD sing N N 258 GLN CG HG2 sing N N 259 GLN CG HG3 sing N N 260 GLN CD OE1 doub N N 261 GLN CD NE2 sing N N 262 GLN NE2 HE21 sing N N 263 GLN NE2 HE22 sing N N 264 GLN OXT HXT sing N N 265 GLU N CA sing N N 266 GLU N H sing N N 267 GLU N H2 sing N N 268 GLU CA C sing N N 269 GLU CA CB sing N N 270 GLU CA HA sing N N 271 GLU C O doub N N 272 GLU C OXT sing N N 273 GLU CB CG sing N N 274 GLU CB HB2 sing N N 275 GLU CB HB3 sing N N 276 GLU CG CD sing N N 277 GLU CG HG2 sing N N 278 GLU CG HG3 sing N N 279 GLU CD OE1 doub N N 280 GLU CD OE2 sing N N 281 GLU OE2 HE2 sing N N 282 GLU OXT HXT sing N N 283 GLY N CA sing N N 284 GLY N H sing N N 285 GLY N H2 sing N N 286 GLY CA C sing N N 287 GLY CA HA2 sing N N 288 GLY CA HA3 sing N N 289 GLY C O doub N N 290 GLY C OXT sing N N 291 GLY OXT HXT sing N N 292 HIS N CA sing N N 293 HIS N H sing N N 294 HIS N H2 sing N N 295 HIS CA C sing N N 296 HIS CA CB sing N N 297 HIS CA HA sing N N 298 HIS C O doub N N 299 HIS C OXT sing N N 300 HIS CB CG sing N N 301 HIS CB HB2 sing N N 302 HIS CB HB3 sing N N 303 HIS CG ND1 sing Y N 304 HIS CG CD2 doub Y N 305 HIS ND1 CE1 doub Y N 306 HIS ND1 HD1 sing N N 307 HIS CD2 NE2 sing Y N 308 HIS CD2 HD2 sing N N 309 HIS CE1 NE2 sing Y N 310 HIS CE1 HE1 sing N N 311 HIS NE2 HE2 sing N N 312 HIS OXT HXT sing N N 313 HOH O H1 sing N N 314 HOH O H2 sing N N 315 ILE N CA sing N N 316 ILE N H sing N N 317 ILE N H2 sing N N 318 ILE CA C sing N N 319 ILE CA CB sing N N 320 ILE CA HA sing N N 321 ILE C O doub N N 322 ILE C OXT sing N N 323 ILE CB CG1 sing N N 324 ILE CB CG2 sing N N 325 ILE CB HB sing N N 326 ILE CG1 CD1 sing N N 327 ILE CG1 HG12 sing N N 328 ILE CG1 HG13 sing N N 329 ILE CG2 HG21 sing N N 330 ILE CG2 HG22 sing N N 331 ILE CG2 HG23 sing N N 332 ILE CD1 HD11 sing N N 333 ILE CD1 HD12 sing N N 334 ILE CD1 HD13 sing N N 335 ILE OXT HXT sing N N 336 LEU N CA sing N N 337 LEU N H sing N N 338 LEU N H2 sing N N 339 LEU CA C sing N N 340 LEU CA CB sing N N 341 LEU CA HA sing N N 342 LEU C O doub N N 343 LEU C OXT sing N N 344 LEU CB CG sing N N 345 LEU CB HB2 sing N N 346 LEU CB HB3 sing N N 347 LEU CG CD1 sing N N 348 LEU CG CD2 sing N N 349 LEU CG HG sing N N 350 LEU CD1 HD11 sing N N 351 LEU CD1 HD12 sing N N 352 LEU CD1 HD13 sing N N 353 LEU CD2 HD21 sing N N 354 LEU CD2 HD22 sing N N 355 LEU CD2 HD23 sing N N 356 LEU OXT HXT sing N N 357 LYS N CA sing N N 358 LYS N H sing N N 359 LYS N H2 sing N N 360 LYS CA C sing N N 361 LYS CA CB sing N N 362 LYS CA HA sing N N 363 LYS C O doub N N 364 LYS C OXT sing N N 365 LYS CB CG sing N N 366 LYS CB HB2 sing N N 367 LYS CB HB3 sing N N 368 LYS CG CD sing N N 369 LYS CG HG2 sing N N 370 LYS CG HG3 sing N N 371 LYS CD CE sing N N 372 LYS CD HD2 sing N N 373 LYS CD HD3 sing N N 374 LYS CE NZ sing N N 375 LYS CE HE2 sing N N 376 LYS CE HE3 sing N N 377 LYS NZ HZ1 sing N N 378 LYS NZ HZ2 sing N N 379 LYS NZ HZ3 sing N N 380 LYS OXT HXT sing N N 381 MA7 C2 N3 doub Y N 382 MA7 C2 N1 sing Y N 383 MA7 C2 H2 sing N N 384 MA7 C4 C5 doub Y N 385 MA7 C4 N9 sing Y N 386 MA7 C4 N3 sing Y N 387 MA7 C5 C6 sing Y N 388 MA7 C5 N7 sing Y N 389 MA7 C6 N1 doub Y N 390 MA7 C6 N6 sing N N 391 MA7 C8 N9 sing Y N 392 MA7 C8 N7 doub Y N 393 MA7 C8 H8 sing N N 394 MA7 P OP1 doub N N 395 MA7 P OP2 sing N N 396 MA7 P "O5'" sing N N 397 MA7 P OP3 sing N N 398 MA7 OP2 HOP2 sing N N 399 MA7 "O5'" "C5'" sing N N 400 MA7 N9 "C1'" sing N N 401 MA7 N1 CN sing N N 402 MA7 N6 H61 sing N N 403 MA7 N6 H62 sing N N 404 MA7 CN HN1 sing N N 405 MA7 CN HN2 sing N N 406 MA7 CN HN3 sing N N 407 MA7 "C2'" "C1'" sing N N 408 MA7 "C2'" "C3'" sing N N 409 MA7 "C2'" "H2'" sing N N 410 MA7 "C2'" "H2''" sing N N 411 MA7 "C5'" "C4'" sing N N 412 MA7 "C5'" "H5'" sing N N 413 MA7 "C5'" "H5''" sing N N 414 MA7 "C4'" "O4'" sing N N 415 MA7 "C4'" "C3'" sing N N 416 MA7 "C4'" "H4'" sing N N 417 MA7 "O4'" "C1'" sing N N 418 MA7 "C1'" "H1'" sing N N 419 MA7 "C3'" "O3'" sing N N 420 MA7 "C3'" "H3'" sing N N 421 MA7 "O3'" "HO3'" sing N N 422 MA7 OP3 HOP3 sing N N 423 MET N CA sing N N 424 MET N H sing N N 425 MET N H2 sing N N 426 MET CA C sing N N 427 MET CA CB sing N N 428 MET CA HA sing N N 429 MET C O doub N N 430 MET C OXT sing N N 431 MET CB CG sing N N 432 MET CB HB2 sing N N 433 MET CB HB3 sing N N 434 MET CG SD sing N N 435 MET CG HG2 sing N N 436 MET CG HG3 sing N N 437 MET SD CE sing N N 438 MET CE HE1 sing N N 439 MET CE HE2 sing N N 440 MET CE HE3 sing N N 441 MET OXT HXT sing N N 442 PHE N CA sing N N 443 PHE N H sing N N 444 PHE N H2 sing N N 445 PHE CA C sing N N 446 PHE CA CB sing N N 447 PHE CA HA sing N N 448 PHE C O doub N N 449 PHE C OXT sing N N 450 PHE CB CG sing N N 451 PHE CB HB2 sing N N 452 PHE CB HB3 sing N N 453 PHE CG CD1 doub Y N 454 PHE CG CD2 sing Y N 455 PHE CD1 CE1 sing Y N 456 PHE CD1 HD1 sing N N 457 PHE CD2 CE2 doub Y N 458 PHE CD2 HD2 sing N N 459 PHE CE1 CZ doub Y N 460 PHE CE1 HE1 sing N N 461 PHE CE2 CZ sing Y N 462 PHE CE2 HE2 sing N N 463 PHE CZ HZ sing N N 464 PHE OXT HXT sing N N 465 PRO N CA sing N N 466 PRO N CD sing N N 467 PRO N H sing N N 468 PRO CA C sing N N 469 PRO CA CB sing N N 470 PRO CA HA sing N N 471 PRO C O doub N N 472 PRO C OXT sing N N 473 PRO CB CG sing N N 474 PRO CB HB2 sing N N 475 PRO CB HB3 sing N N 476 PRO CG CD sing N N 477 PRO CG HG2 sing N N 478 PRO CG HG3 sing N N 479 PRO CD HD2 sing N N 480 PRO CD HD3 sing N N 481 PRO OXT HXT sing N N 482 SER N CA sing N N 483 SER N H sing N N 484 SER N H2 sing N N 485 SER CA C sing N N 486 SER CA CB sing N N 487 SER CA HA sing N N 488 SER C O doub N N 489 SER C OXT sing N N 490 SER CB OG sing N N 491 SER CB HB2 sing N N 492 SER CB HB3 sing N N 493 SER OG HG sing N N 494 SER OXT HXT sing N N 495 THR N CA sing N N 496 THR N H sing N N 497 THR N H2 sing N N 498 THR CA C sing N N 499 THR CA CB sing N N 500 THR CA HA sing N N 501 THR C O doub N N 502 THR C OXT sing N N 503 THR CB OG1 sing N N 504 THR CB CG2 sing N N 505 THR CB HB sing N N 506 THR OG1 HG1 sing N N 507 THR CG2 HG21 sing N N 508 THR CG2 HG22 sing N N 509 THR CG2 HG23 sing N N 510 THR OXT HXT sing N N 511 TRP N CA sing N N 512 TRP N H sing N N 513 TRP N H2 sing N N 514 TRP CA C sing N N 515 TRP CA CB sing N N 516 TRP CA HA sing N N 517 TRP C O doub N N 518 TRP C OXT sing N N 519 TRP CB CG sing N N 520 TRP CB HB2 sing N N 521 TRP CB HB3 sing N N 522 TRP CG CD1 doub Y N 523 TRP CG CD2 sing Y N 524 TRP CD1 NE1 sing Y N 525 TRP CD1 HD1 sing N N 526 TRP CD2 CE2 doub Y N 527 TRP CD2 CE3 sing Y N 528 TRP NE1 CE2 sing Y N 529 TRP NE1 HE1 sing N N 530 TRP CE2 CZ2 sing Y N 531 TRP CE3 CZ3 doub Y N 532 TRP CE3 HE3 sing N N 533 TRP CZ2 CH2 doub Y N 534 TRP CZ2 HZ2 sing N N 535 TRP CZ3 CH2 sing Y N 536 TRP CZ3 HZ3 sing N N 537 TRP CH2 HH2 sing N N 538 TRP OXT HXT sing N N 539 TYR N CA sing N N 540 TYR N H sing N N 541 TYR N H2 sing N N 542 TYR CA C sing N N 543 TYR CA CB sing N N 544 TYR CA HA sing N N 545 TYR C O doub N N 546 TYR C OXT sing N N 547 TYR CB CG sing N N 548 TYR CB HB2 sing N N 549 TYR CB HB3 sing N N 550 TYR CG CD1 doub Y N 551 TYR CG CD2 sing Y N 552 TYR CD1 CE1 sing Y N 553 TYR CD1 HD1 sing N N 554 TYR CD2 CE2 doub Y N 555 TYR CD2 HD2 sing N N 556 TYR CE1 CZ doub Y N 557 TYR CE1 HE1 sing N N 558 TYR CE2 CZ sing Y N 559 TYR CE2 HE2 sing N N 560 TYR CZ OH sing N N 561 TYR OH HH sing N N 562 TYR OXT HXT sing N N 563 VAL N CA sing N N 564 VAL N H sing N N 565 VAL N H2 sing N N 566 VAL CA C sing N N 567 VAL CA CB sing N N 568 VAL CA HA sing N N 569 VAL C O doub N N 570 VAL C OXT sing N N 571 VAL CB CG1 sing N N 572 VAL CB CG2 sing N N 573 VAL CB HB sing N N 574 VAL CG1 HG11 sing N N 575 VAL CG1 HG12 sing N N 576 VAL CG1 HG13 sing N N 577 VAL CG2 HG21 sing N N 578 VAL CG2 HG22 sing N N 579 VAL CG2 HG23 sing N N 580 VAL OXT HXT sing N N 581 XL3 CA CB sing N N 582 XL3 CA HA sing N N 583 XL3 CA HAA sing N N 584 XL3 CA HAB sing N N 585 XL3 CC CB sing N N 586 XL3 CB HB sing N N 587 XL3 CB HBA sing N N 588 XL3 SG CC sing N N 589 XL3 CC HC sing N N 590 XL3 CC HCA sing N N 591 XL3 SG HSG sing N N 592 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BUC 'double helix' 3BUC 'b-form double helix' 3BUC 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 B DC 12 1_555 -0.170 -0.214 0.270 -5.739 -11.546 2.442 1 B_DG3:DC12_C B 3 ? C 12 ? 19 1 1 A DT 4 1_555 B DA 11 1_555 0.026 -0.080 -0.376 4.210 -1.504 2.535 2 B_DT4:DA11_C B 4 ? C 11 ? 20 1 1 A DA 5 1_555 B DT 10 1_555 -0.406 -0.448 -0.049 7.334 9.402 2.138 3 B_DA5:DT10_C B 5 ? C 10 ? 20 1 1 A DT 6 1_555 B DT 8 1_555 1.964 -1.808 0.718 42.533 -7.803 5.227 4 B_DT6:DT8_C B 6 ? C 8 ? 16 1 1 A DA 8 1_555 B DT 7 1_555 0.029 -0.198 -0.037 -14.952 4.803 3.818 5 B_DA8:DT7_C B 8 ? C 7 ? 20 1 1 A DC 9 1_555 B DG 6 1_555 1.273 -0.235 0.308 -0.990 -18.747 10.592 6 B_DC9:DG6_C B 9 ? C 6 ? ? 1 1 A DT 10 1_555 B DA 5 1_555 -0.062 -0.340 -0.267 8.845 -11.505 -8.252 7 B_DT10:DA5_C B 10 ? C 5 ? 20 1 1 A DG 11 1_555 B DC 4 1_555 0.106 -0.380 0.053 -4.128 -10.777 -4.125 8 B_DG11:DC4_C B 11 ? C 4 ? 19 1 1 A DC 12 1_555 B DG 3 1_555 0.665 -0.335 0.164 -8.656 -9.463 1.336 9 B_DC12:DG3_C B 12 ? C 3 ? 19 1 1 A DG 13 1_555 B DC 2 1_555 -0.274 -0.310 0.148 6.920 0.989 -3.023 10 B_DG13:DC2_C B 13 ? C 2 ? 19 1 1 A DC 1 1_555 A DG 13 8_555 0.370 3.326 -1.072 15.497 -14.007 66.928 11 B_DC1:DG13_B B 1 ? B 13 ? ? ? 1 A DC 1 1_555 A DG 13 1_555 -0.370 3.326 1.072 -15.497 -14.007 -66.928 12 B_DC1:DG13_B B 1 ? B 13 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 B DC 12 1_555 A DT 4 1_555 B DA 11 1_555 -0.846 -1.056 3.083 5.525 0.403 27.096 -2.300 2.998 2.841 0.848 -11.638 27.646 1 BB_DG3DT4:DA11DC12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 A DT 4 1_555 B DA 11 1_555 A DA 5 1_555 B DT 10 1_555 0.269 -0.585 3.261 -4.562 6.213 33.556 -1.936 -1.150 3.046 10.588 7.775 34.405 2 BB_DT4DA5:DT10DA11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 A DA 5 1_555 B DT 10 1_555 A DT 6 1_555 B DT 8 1_555 0.696 0.604 2.461 -2.703 0.034 50.973 0.700 -0.948 2.423 0.039 3.139 51.040 3 BB_DA5DT6:DT8DT10_CC B 5 ? C 10 ? B 6 ? C 8 ? 1 A DA 8 1_555 B DT 7 1_555 A DC 9 1_555 B DG 6 1_555 -0.566 -0.386 3.351 4.819 -10.285 33.269 0.950 1.683 3.215 -17.346 -8.127 35.103 4 BB_DA8DC9:DG6DT7_CC B 8 ? C 7 ? B 9 ? C 6 ? 1 A DC 9 1_555 B DG 6 1_555 A DT 10 1_555 B DA 5 1_555 -0.984 -0.023 3.001 5.311 6.238 23.563 -1.706 3.686 2.626 14.717 -12.530 24.928 5 BB_DC9DT10:DA5DG6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 A DT 10 1_555 B DA 5 1_555 A DG 11 1_555 B DC 4 1_555 0.833 -0.303 3.649 1.109 8.927 40.476 -1.488 -1.046 3.528 12.714 -1.579 41.422 6 BB_DT10DG11:DC4DA5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 A DG 11 1_555 B DC 4 1_555 A DC 12 1_555 B DG 3 1_555 0.894 -0.391 3.316 1.325 -1.539 33.529 -0.419 -1.325 3.361 -2.665 -2.294 33.589 7 BB_DG11DC12:DG3DC4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 A DC 12 1_555 B DG 3 1_555 A DG 13 1_555 B DC 2 1_555 -0.546 -0.350 2.858 1.625 10.696 25.810 -2.884 1.459 2.480 22.716 -3.452 27.950 8 BB_DC12DG13:DC2DG3_CC B 12 ? C 3 ? B 13 ? C 2 ? # _atom_sites.entry_id 3BUC _atom_sites.fract_transf_matrix[1][1] 0.012835 _atom_sites.fract_transf_matrix[1][2] 0.007410 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004414 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_