HEADER OXIDOREDUCTASE 03-JAN-08 3BUR TITLE CRYSTAL STRUCTURE OF DELTA(4)-3-KETOSTEROID 5-BETA-REDUCTASE IN TITLE 2 COMPLEX WITH NADP AND TESTOSTERONE. RESOLUTION: 1.62 A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXO-5-BETA-STEROID 4-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: AKRD1; COMPND 5 SYNONYM: DELTA(4)-3-KETOSTEROID 5-BETA-REDUCTASE, ALDO-KETO REDUCTASE COMPND 6 FAMILY 1 MEMBER D1; COMPND 7 EC: 1.3.1.3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28(A) KEYWDS 5BETA-REDUCTASE; CATALYTIC TETRAD; TESTOSTERONE; NADP, BILE ACID KEYWDS 2 CATABOLISM, DISEASE MUTATION, LIPID METABOLISM, OXIDOREDUCTASE, KEYWDS 3 STEROID METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR L.DI COSTANZO,D.W.CHRISTIANSON REVDAT 5 30-AUG-23 3BUR 1 REMARK REVDAT 4 13-JUL-11 3BUR 1 VERSN REVDAT 3 24-FEB-09 3BUR 1 VERSN REVDAT 2 24-JUN-08 3BUR 1 JRNL REVDAT 1 01-APR-08 3BUR 0 JRNL AUTH L.DI COSTANZO,J.E.DRURY,T.M.PENNING,D.W.CHRISTIANSON JRNL TITL CRYSTAL STRUCTURE OF HUMAN LIVER {DELTA}4-3-KETOSTEROID JRNL TITL 2 5{BETA}-REDUCTASE (AKR1D1) AND IMPLICATIONS FOR SUBSTRATE JRNL TITL 3 BINDING AND CATALYSIS. JRNL REF J.BIOL.CHEM. V. 283 16830 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18407998 JRNL DOI 10.1074/JBC.M801778200 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.228 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4306 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 81663 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 198 REMARK 3 SOLVENT ATOMS : 498 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 ANGLE DISTANCES (A) : 0.023 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.025 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.044 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.016 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1J96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% WT/VOL PEG 4000; 1O% REMARK 280 ISOPROPANOL; 100 MM TRIS PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.90950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.45750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.99250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.45750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.90950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.99250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 326 C TYR A 326 OXT 0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 84 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 104 CD - NE - CZ ANGL. DEV. = 33.1 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 174 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 174 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR A 219 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 266 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 307 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 9 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 14 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR B 26 CB - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR B 26 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR B 219 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 TYR B 219 CB - CG - CD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 38.17 -149.19 REMARK 500 ASN A 137 7.50 -69.71 REMARK 500 ASN A 146 80.83 -155.08 REMARK 500 PHE A 200 78.43 -150.17 REMARK 500 SER A 220 49.97 39.06 REMARK 500 THR A 224 165.90 78.38 REMARK 500 HIS B 8 33.02 -142.39 REMARK 500 TYR B 132 71.07 -117.19 REMARK 500 ASP B 135 -163.43 -79.40 REMARK 500 THR B 224 169.85 75.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TES A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TES B 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BUV RELATED DB: PDB REMARK 900 RELATED ID: 3BV7 RELATED DB: PDB DBREF 3BUR A 1 326 UNP P51857 AK1D1_HUMAN 1 326 DBREF 3BUR B 1 326 UNP P51857 AK1D1_HUMAN 1 326 SEQRES 1 A 326 MET ASP LEU SER ALA ALA SER HIS ARG ILE PRO LEU SER SEQRES 2 A 326 ASP GLY ASN SER ILE PRO ILE ILE GLY LEU GLY THR TYR SEQRES 3 A 326 SER GLU PRO LYS SER THR PRO LYS GLY ALA CYS ALA THR SEQRES 4 A 326 SER VAL LYS VAL ALA ILE ASP THR GLY TYR ARG HIS ILE SEQRES 5 A 326 ASP GLY ALA TYR ILE TYR GLN ASN GLU HIS GLU VAL GLY SEQRES 6 A 326 GLU ALA ILE ARG GLU LYS ILE ALA GLU GLY LYS VAL ARG SEQRES 7 A 326 ARG GLU ASP ILE PHE TYR CYS GLY LYS LEU TRP ALA THR SEQRES 8 A 326 ASN HIS VAL PRO GLU MET VAL ARG PRO THR LEU GLU ARG SEQRES 9 A 326 THR LEU ARG VAL LEU GLN LEU ASP TYR VAL ASP LEU TYR SEQRES 10 A 326 ILE ILE GLU VAL PRO MET ALA PHE LYS PRO GLY ASP GLU SEQRES 11 A 326 ILE TYR PRO ARG ASP GLU ASN GLY LYS TRP LEU TYR HIS SEQRES 12 A 326 LYS SER ASN LEU CYS ALA THR TRP GLU ALA MET GLU ALA SEQRES 13 A 326 CYS LYS ASP ALA GLY LEU VAL LYS SER LEU GLY VAL SER SEQRES 14 A 326 ASN PHE ASN ARG ARG GLN LEU GLU LEU ILE LEU ASN LYS SEQRES 15 A 326 PRO GLY LEU LYS HIS LYS PRO VAL SER ASN GLN VAL GLU SEQRES 16 A 326 CYS HIS PRO TYR PHE THR GLN PRO LYS LEU LEU LYS PHE SEQRES 17 A 326 CYS GLN GLN HIS ASP ILE VAL ILE THR ALA TYR SER PRO SEQRES 18 A 326 LEU GLY THR SER ARG ASN PRO ILE TRP VAL ASN VAL SER SEQRES 19 A 326 SER PRO PRO LEU LEU LYS ASP ALA LEU LEU ASN SER LEU SEQRES 20 A 326 GLY LYS ARG TYR ASN LYS THR ALA ALA GLN ILE VAL LEU SEQRES 21 A 326 ARG PHE ASN ILE GLN ARG GLY VAL VAL VAL ILE PRO LYS SEQRES 22 A 326 SER PHE ASN LEU GLU ARG ILE LYS GLU ASN PHE GLN ILE SEQRES 23 A 326 PHE ASP PHE SER LEU THR GLU GLU GLU MET LYS ASP ILE SEQRES 24 A 326 GLU ALA LEU ASN LYS ASN VAL ARG PHE VAL GLU LEU LEU SEQRES 25 A 326 MET TRP ARG ASP HIS PRO GLU TYR PRO PHE HIS ASP GLU SEQRES 26 A 326 TYR SEQRES 1 B 326 MET ASP LEU SER ALA ALA SER HIS ARG ILE PRO LEU SER SEQRES 2 B 326 ASP GLY ASN SER ILE PRO ILE ILE GLY LEU GLY THR TYR SEQRES 3 B 326 SER GLU PRO LYS SER THR PRO LYS GLY ALA CYS ALA THR SEQRES 4 B 326 SER VAL LYS VAL ALA ILE ASP THR GLY TYR ARG HIS ILE SEQRES 5 B 326 ASP GLY ALA TYR ILE TYR GLN ASN GLU HIS GLU VAL GLY SEQRES 6 B 326 GLU ALA ILE ARG GLU LYS ILE ALA GLU GLY LYS VAL ARG SEQRES 7 B 326 ARG GLU ASP ILE PHE TYR CYS GLY LYS LEU TRP ALA THR SEQRES 8 B 326 ASN HIS VAL PRO GLU MET VAL ARG PRO THR LEU GLU ARG SEQRES 9 B 326 THR LEU ARG VAL LEU GLN LEU ASP TYR VAL ASP LEU TYR SEQRES 10 B 326 ILE ILE GLU VAL PRO MET ALA PHE LYS PRO GLY ASP GLU SEQRES 11 B 326 ILE TYR PRO ARG ASP GLU ASN GLY LYS TRP LEU TYR HIS SEQRES 12 B 326 LYS SER ASN LEU CYS ALA THR TRP GLU ALA MET GLU ALA SEQRES 13 B 326 CYS LYS ASP ALA GLY LEU VAL LYS SER LEU GLY VAL SER SEQRES 14 B 326 ASN PHE ASN ARG ARG GLN LEU GLU LEU ILE LEU ASN LYS SEQRES 15 B 326 PRO GLY LEU LYS HIS LYS PRO VAL SER ASN GLN VAL GLU SEQRES 16 B 326 CYS HIS PRO TYR PHE THR GLN PRO LYS LEU LEU LYS PHE SEQRES 17 B 326 CYS GLN GLN HIS ASP ILE VAL ILE THR ALA TYR SER PRO SEQRES 18 B 326 LEU GLY THR SER ARG ASN PRO ILE TRP VAL ASN VAL SER SEQRES 19 B 326 SER PRO PRO LEU LEU LYS ASP ALA LEU LEU ASN SER LEU SEQRES 20 B 326 GLY LYS ARG TYR ASN LYS THR ALA ALA GLN ILE VAL LEU SEQRES 21 B 326 ARG PHE ASN ILE GLN ARG GLY VAL VAL VAL ILE PRO LYS SEQRES 22 B 326 SER PHE ASN LEU GLU ARG ILE LYS GLU ASN PHE GLN ILE SEQRES 23 B 326 PHE ASP PHE SER LEU THR GLU GLU GLU MET LYS ASP ILE SEQRES 24 B 326 GLU ALA LEU ASN LYS ASN VAL ARG PHE VAL GLU LEU LEU SEQRES 25 B 326 MET TRP ARG ASP HIS PRO GLU TYR PRO PHE HIS ASP GLU SEQRES 26 B 326 TYR HET NAP A 328 48 HET TES A 339 21 HET GOL A 331 6 HET GOL A 332 6 HET GOL A 333 6 HET GOL A 334 6 HET GOL A 335 6 HET GOL A 338 6 HET NAP B 327 48 HET TES B 340 21 HET GOL B 329 6 HET GOL B 330 6 HET GOL B 336 6 HET GOL B 337 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM TES TESTOSTERONE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 TES 2(C19 H28 O2) FORMUL 5 GOL 10(C3 H8 O3) FORMUL 17 HOH *498(H2 O) HELIX 1 1 GLY A 35 GLY A 48 1 14 HELIX 2 2 ALA A 55 GLN A 59 5 5 HELIX 3 3 ASN A 60 GLU A 74 1 15 HELIX 4 4 ARG A 78 ILE A 82 5 5 HELIX 5 5 TRP A 89 HIS A 93 5 5 HELIX 6 6 VAL A 94 GLN A 110 1 17 HELIX 7 7 ASN A 146 ALA A 160 1 15 HELIX 8 8 ASN A 172 ASN A 181 1 10 HELIX 9 9 GLN A 202 HIS A 212 1 11 HELIX 10 10 PRO A 237 LYS A 240 5 4 HELIX 11 11 ASP A 241 ASN A 252 1 12 HELIX 12 12 THR A 254 ARG A 266 1 13 HELIX 13 13 ASN A 276 GLN A 285 1 10 HELIX 14 14 THR A 292 ALA A 301 1 10 HELIX 15 15 LEU A 311 ARG A 315 5 5 HELIX 16 16 GLU B 28 THR B 32 5 5 HELIX 17 17 GLY B 35 GLY B 48 1 14 HELIX 18 18 ALA B 55 GLN B 59 5 5 HELIX 19 19 ASN B 60 GLU B 74 1 15 HELIX 20 20 ARG B 78 ILE B 82 5 5 HELIX 21 21 TRP B 89 HIS B 93 5 5 HELIX 22 22 VAL B 94 GLU B 96 5 3 HELIX 23 23 MET B 97 GLN B 110 1 14 HELIX 24 24 ASN B 146 ALA B 160 1 15 HELIX 25 25 ASN B 172 ASN B 181 1 10 HELIX 26 26 GLN B 202 HIS B 212 1 11 HELIX 27 27 PRO B 237 LYS B 240 5 4 HELIX 28 28 ASP B 241 TYR B 251 1 11 HELIX 29 29 THR B 254 ARG B 266 1 13 HELIX 30 30 ASN B 276 GLN B 285 1 10 HELIX 31 31 THR B 292 ALA B 301 1 10 HELIX 32 32 LEU B 311 ARG B 315 5 5 SHEET 1 A 2 ARG A 9 PRO A 11 0 SHEET 2 A 2 SER A 17 PRO A 19 -1 O ILE A 18 N ILE A 10 SHEET 1 B 8 LEU A 23 GLY A 24 0 SHEET 2 B 8 HIS A 51 ASP A 53 1 O ASP A 53 N LEU A 23 SHEET 3 B 8 PHE A 83 LEU A 88 1 O PHE A 83 N ILE A 52 SHEET 4 B 8 VAL A 114 ILE A 119 1 O ILE A 118 N LEU A 88 SHEET 5 B 8 VAL A 163 SER A 169 1 O GLY A 167 N TYR A 117 SHEET 6 B 8 SER A 191 GLU A 195 1 O SER A 191 N VAL A 168 SHEET 7 B 8 VAL A 215 TYR A 219 1 O THR A 217 N VAL A 194 SHEET 8 B 8 VAL A 269 VAL A 270 1 O VAL A 269 N ALA A 218 SHEET 1 C 2 ALA A 124 PHE A 125 0 SHEET 2 C 2 TYR A 142 HIS A 143 -1 O HIS A 143 N ALA A 124 SHEET 1 D 2 ARG B 9 PRO B 11 0 SHEET 2 D 2 SER B 17 PRO B 19 -1 O ILE B 18 N ILE B 10 SHEET 1 E 8 LEU B 23 GLY B 24 0 SHEET 2 E 8 HIS B 51 ASP B 53 1 O ASP B 53 N LEU B 23 SHEET 3 E 8 PHE B 83 LEU B 88 1 O PHE B 83 N ILE B 52 SHEET 4 E 8 VAL B 114 ILE B 119 1 O ILE B 118 N LEU B 88 SHEET 5 E 8 VAL B 163 SER B 169 1 O GLY B 167 N TYR B 117 SHEET 6 E 8 SER B 191 GLU B 195 1 O SER B 191 N VAL B 168 SHEET 7 E 8 VAL B 215 TYR B 219 1 O TYR B 219 N VAL B 194 SHEET 8 E 8 VAL B 269 VAL B 270 1 O VAL B 269 N ALA B 218 SITE 1 AC1 31 GLY B 24 THR B 25 TYR B 26 ASP B 53 SITE 2 AC1 31 TYR B 58 SER B 169 ASN B 170 GLN B 193 SITE 3 AC1 31 TYR B 219 SER B 220 PRO B 221 LEU B 222 SITE 4 AC1 31 GLY B 223 THR B 224 SER B 225 LEU B 239 SITE 5 AC1 31 ALA B 256 ILE B 271 PRO B 272 LYS B 273 SITE 6 AC1 31 SER B 274 PHE B 275 ARG B 279 GLU B 282 SITE 7 AC1 31 ASN B 283 HOH B1062 HOH B1067 HOH B1162 SITE 8 AC1 31 HOH B1367 HOH B1410 HOH B1476 SITE 1 AC2 32 GLY A 24 THR A 25 TYR A 26 ASP A 53 SITE 2 AC2 32 TYR A 58 LYS A 87 SER A 169 ASN A 170 SITE 3 AC2 32 GLN A 193 TYR A 219 SER A 220 PRO A 221 SITE 4 AC2 32 LEU A 222 GLY A 223 THR A 224 SER A 225 SITE 5 AC2 32 LEU A 239 ALA A 256 ILE A 271 PRO A 272 SITE 6 AC2 32 LYS A 273 SER A 274 PHE A 275 ARG A 279 SITE 7 AC2 32 GLU A 282 ASN A 283 HOH A1042 HOH A1082 SITE 8 AC2 32 HOH A1229 HOH A1252 HOH A1315 HOH A1486 SITE 1 AC3 8 TYR A 26 ILE A 57 TRP A 89 TYR A 132 SITE 2 AC3 8 SER A 225 ARG A 226 ASN A 227 TRP A 230 SITE 1 AC4 10 TYR B 26 ILE B 57 TRP B 89 TYR B 132 SITE 2 AC4 10 THR B 224 SER B 225 ARG B 226 ASN B 227 SITE 3 AC4 10 TRP B 230 HOH B1367 SITE 1 AC5 5 GLU A 103 ARG A 107 LEU A 111 ASP B 129 SITE 2 AC5 5 HOH B1078 SITE 1 AC6 4 THR B 224 SER B 225 ARG B 226 HOH B1457 SITE 1 AC7 3 ARG A 134 ILE A 229 TRP A 230 SITE 1 AC8 5 THR A 224 SER A 225 ARG A 226 LEU A 239 SITE 2 AC8 5 HOH A1486 SITE 1 AC9 6 ASP A 112 HOH A1131 MET B 97 PRO B 100 SITE 2 AC9 6 THR B 101 ARG B 104 SITE 1 BC1 1 SER A 225 SITE 1 BC2 7 LEU A 106 ARG A 107 GLN A 110 LEU A 111 SITE 2 BC2 7 HOH A1032 LEU B 243 ASP B 298 SITE 1 BC3 1 ARG B 279 SITE 1 BC4 8 ARG A 99 GLU A 103 LEU A 162 HOH A1123 SITE 2 BC4 8 TYR B 56 ARG B 104 ASP B 129 HOH B1339 SITE 1 BC5 1 ARG A 279 CRYST1 49.819 109.985 128.915 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020074 -0.000001 -0.000001 0.00000 SCALE2 0.000000 0.009092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007757 0.00000 CONECT 5257 5258 5259 5260 5279 CONECT 5258 5257 CONECT 5259 5257 CONECT 5260 5257 5261 CONECT 5261 5260 5262 CONECT 5262 5261 5263 5264 CONECT 5263 5262 5268 CONECT 5264 5262 5265 5266 CONECT 5265 5264 CONECT 5266 5264 5267 5268 CONECT 5267 5266 5301 CONECT 5268 5263 5266 5269 CONECT 5269 5268 5270 5278 CONECT 5270 5269 5271 CONECT 5271 5270 5272 CONECT 5272 5271 5273 5278 CONECT 5273 5272 5274 5275 CONECT 5274 5273 CONECT 5275 5273 5276 CONECT 5276 5275 5277 CONECT 5277 5276 5278 CONECT 5278 5269 5272 5277 CONECT 5279 5257 5280 CONECT 5280 5279 5281 5282 5283 CONECT 5281 5280 CONECT 5282 5280 CONECT 5283 5280 5284 CONECT 5284 5283 5285 CONECT 5285 5284 5286 5287 CONECT 5286 5285 5291 CONECT 5287 5285 5288 5289 CONECT 5288 5287 CONECT 5289 5287 5290 5291 CONECT 5290 5289 CONECT 5291 5286 5289 5292 CONECT 5292 5291 5293 5300 CONECT 5293 5292 5294 CONECT 5294 5293 5295 5298 CONECT 5295 5294 5296 5297 CONECT 5296 5295 CONECT 5297 5295 CONECT 5298 5294 5299 CONECT 5299 5298 5300 CONECT 5300 5292 5299 CONECT 5301 5267 5302 5303 5304 CONECT 5302 5301 CONECT 5303 5301 CONECT 5304 5301 CONECT 5305 5306 5315 CONECT 5306 5305 5307 CONECT 5307 5306 5308 5309 CONECT 5308 5307 CONECT 5309 5307 5310 CONECT 5310 5309 5311 5315 CONECT 5311 5310 5312 CONECT 5312 5311 5313 CONECT 5313 5312 5314 5319 CONECT 5314 5313 5315 5316 CONECT 5315 5305 5310 5314 5325 CONECT 5316 5314 5317 CONECT 5317 5316 5318 CONECT 5318 5317 5319 5322 5324 CONECT 5319 5313 5318 5320 CONECT 5320 5319 5321 CONECT 5321 5320 5322 CONECT 5322 5318 5321 5323 CONECT 5323 5322 CONECT 5324 5318 CONECT 5325 5315 CONECT 5326 5327 5328 CONECT 5327 5326 CONECT 5328 5326 5329 5330 CONECT 5329 5328 CONECT 5330 5328 5331 CONECT 5331 5330 CONECT 5332 5333 5334 CONECT 5333 5332 CONECT 5334 5332 5335 5336 CONECT 5335 5334 CONECT 5336 5334 5337 CONECT 5337 5336 CONECT 5338 5339 5340 CONECT 5339 5338 CONECT 5340 5338 5341 5342 CONECT 5341 5340 CONECT 5342 5340 5343 CONECT 5343 5342 CONECT 5344 5345 5346 CONECT 5345 5344 CONECT 5346 5344 5347 5348 CONECT 5347 5346 CONECT 5348 5346 5349 CONECT 5349 5348 CONECT 5350 5351 5352 CONECT 5351 5350 CONECT 5352 5350 5353 5354 CONECT 5353 5352 CONECT 5354 5352 5355 CONECT 5355 5354 CONECT 5356 5357 5358 CONECT 5357 5356 CONECT 5358 5356 5359 5360 CONECT 5359 5358 CONECT 5360 5358 5361 CONECT 5361 5360 CONECT 5362 5363 5364 5365 5384 CONECT 5363 5362 CONECT 5364 5362 CONECT 5365 5362 5366 CONECT 5366 5365 5367 CONECT 5367 5366 5368 5369 CONECT 5368 5367 5373 CONECT 5369 5367 5370 5371 CONECT 5370 5369 CONECT 5371 5369 5372 5373 CONECT 5372 5371 5406 CONECT 5373 5368 5371 5374 CONECT 5374 5373 5375 5383 CONECT 5375 5374 5376 CONECT 5376 5375 5377 CONECT 5377 5376 5378 5383 CONECT 5378 5377 5379 5380 CONECT 5379 5378 CONECT 5380 5378 5381 CONECT 5381 5380 5382 CONECT 5382 5381 5383 CONECT 5383 5374 5377 5382 CONECT 5384 5362 5385 CONECT 5385 5384 5386 5387 5388 CONECT 5386 5385 CONECT 5387 5385 CONECT 5388 5385 5389 CONECT 5389 5388 5390 CONECT 5390 5389 5391 5392 CONECT 5391 5390 5396 CONECT 5392 5390 5393 5394 CONECT 5393 5392 CONECT 5394 5392 5395 5396 CONECT 5395 5394 CONECT 5396 5391 5394 5397 CONECT 5397 5396 5398 5405 CONECT 5398 5397 5399 CONECT 5399 5398 5400 5403 CONECT 5400 5399 5401 5402 CONECT 5401 5400 CONECT 5402 5400 CONECT 5403 5399 5404 CONECT 5404 5403 5405 CONECT 5405 5397 5404 CONECT 5406 5372 5407 5408 5409 CONECT 5407 5406 CONECT 5408 5406 CONECT 5409 5406 CONECT 5410 5411 5420 CONECT 5411 5410 5412 CONECT 5412 5411 5413 5414 CONECT 5413 5412 CONECT 5414 5412 5415 CONECT 5415 5414 5416 5420 CONECT 5416 5415 5417 CONECT 5417 5416 5418 CONECT 5418 5417 5419 5424 CONECT 5419 5418 5420 5421 CONECT 5420 5410 5415 5419 5430 CONECT 5421 5419 5422 CONECT 5422 5421 5423 CONECT 5423 5422 5424 5427 5429 CONECT 5424 5418 5423 5425 CONECT 5425 5424 5426 CONECT 5426 5425 5427 CONECT 5427 5423 5426 5428 CONECT 5428 5427 CONECT 5429 5423 CONECT 5430 5420 CONECT 5431 5432 5433 CONECT 5432 5431 CONECT 5433 5431 5434 5435 CONECT 5434 5433 CONECT 5435 5433 5436 CONECT 5436 5435 CONECT 5437 5438 5439 CONECT 5438 5437 CONECT 5439 5437 5440 5441 CONECT 5440 5439 CONECT 5441 5439 5442 CONECT 5442 5441 CONECT 5443 5444 5445 CONECT 5444 5443 CONECT 5445 5443 5446 5447 CONECT 5446 5445 CONECT 5447 5445 5448 CONECT 5448 5447 CONECT 5449 5450 5451 CONECT 5450 5449 CONECT 5451 5449 5452 5453 CONECT 5452 5451 CONECT 5453 5451 5454 CONECT 5454 5453 MASTER 341 0 14 32 22 0 36 6 5950 2 198 52 END