HEADER TOXIN/STRUCTURAL PROTEIN 04-JAN-08 3BUZ TITLE CRYSTAL STRUCTURE OF IA-BTAD-ACTIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IOTA TOXIN COMPONENT IA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IOTA-TOXIN ADP-RIBOSYLATION UNIT:IA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ALPHA-ACTIN-1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS CEREUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1396; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 8 ORGANISM_COMMON: RABBIT; SOURCE 9 ORGANISM_TAXID: 9986; SOURCE 10 GENE: ACTA1, ACTA KEYWDS IOTA TOXIN, ACTIN, TOXIN-ACTIN COMPLEX, ACETYLATION, ATP-BINDING, KEYWDS 2 CYTOPLASM, CYTOSKELETON, METHYLATION, MUSCLE PROTEIN, NUCLEOTIDE- KEYWDS 3 BINDING, STRUCTURAL PROTEIN, TOXIN-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUGE,M.NAGAHAMA,M.ODA,S.IWAMOTO,H.UTSUNOMIYA,V.E.MARQUEZ, AUTHOR 2 N.KATUNUMA,M.NISHIZAWA,J.SAKURAI REVDAT 4 01-NOV-23 3BUZ 1 REMARK LINK REVDAT 3 24-FEB-09 3BUZ 1 VERSN REVDAT 2 01-JUL-08 3BUZ 1 JRNL REVDAT 1 13-MAY-08 3BUZ 0 JRNL AUTH H.TSUGE,M.NAGAHAMA,M.ODA,S.IWAMOTO,H.UTSUNOMIYA,V.E.MARQUEZ, JRNL AUTH 2 N.KATUNUMA,M.NISHIZAWA,J.SAKURAI JRNL TITL STRUCTURAL BASIS OF ACTIN RECOGNITION AND ARGININE JRNL TITL 2 ADP-RIBOSYLATION BY CLOSTRIDIUM PERFRINGENS IOTA-TOXIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 7399 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18490658 JRNL DOI 10.1073/PNAS.0801215105 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.432 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.326 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6422 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8707 ; 2.198 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 770 ; 8.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;38.805 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1144 ;22.222 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 954 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4821 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3219 ; 0.277 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4380 ; 0.337 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 332 ; 0.217 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.176 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3947 ; 1.035 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6267 ; 1.836 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2819 ; 2.480 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2440 ; 3.993 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1GIQ AND 1IJJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG1000, 0.1M MES(PH6.5), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.50700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.56350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.17200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.56350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.50700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.17200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 HIS B 40 REMARK 465 GLN B 41 REMARK 465 GLY B 42 REMARK 465 VAL B 43 REMARK 465 MET B 44 REMARK 465 VAL B 45 REMARK 465 GLY B 46 REMARK 465 MET B 47 REMARK 465 GLY B 48 REMARK 465 GLN B 49 REMARK 465 PHE B 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 5 O PRO A 88 2.18 REMARK 500 O ASN A 268 N GLU A 270 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 25 CG GLU A 25 CD 0.093 REMARK 500 ASP A 215 C ASP A 216 N 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 86 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 PRO A 237 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 PRO A 263 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 LYS B 61 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG B 62 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU B 178 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -123.08 46.95 REMARK 500 ARG A 26 -73.21 -52.08 REMARK 500 ASP A 45 53.48 -158.72 REMARK 500 ASP A 86 -73.23 15.99 REMARK 500 LYS A 87 166.34 177.33 REMARK 500 ALA A 101 36.03 75.41 REMARK 500 LYS A 104 -142.67 -62.60 REMARK 500 GLU A 105 94.75 -162.38 REMARK 500 ILE A 106 -61.01 -27.88 REMARK 500 ARG A 107 130.12 177.90 REMARK 500 GLU A 109 -62.30 23.05 REMARK 500 GLN A 127 -61.33 -124.28 REMARK 500 SER A 172 -95.32 4.69 REMARK 500 ASP A 182 11.14 -154.60 REMARK 500 LYS A 189 134.50 -171.59 REMARK 500 LYS A 214 -122.82 46.53 REMARK 500 ASN A 233 -65.16 -108.70 REMARK 500 LYS A 234 -33.22 -25.17 REMARK 500 PRO A 237 -18.28 -27.66 REMARK 500 ILE A 259 -87.02 -46.87 REMARK 500 SER A 260 65.54 -64.91 REMARK 500 ASN A 261 95.09 10.95 REMARK 500 PRO A 263 -75.20 -22.44 REMARK 500 ASN A 265 -34.97 -144.34 REMARK 500 ASN A 268 51.52 -151.77 REMARK 500 PRO A 269 -10.61 -25.91 REMARK 500 ASN A 276 -15.48 -45.17 REMARK 500 GLU A 301 -12.93 -44.93 REMARK 500 ASP A 312 83.77 -62.51 REMARK 500 ALA A 350 -39.05 -33.72 REMARK 500 PRO A 365 99.07 -46.50 REMARK 500 SER A 370 8.66 -58.05 REMARK 500 TYR A 375 -34.49 -30.47 REMARK 500 GLU A 378 4.66 -156.15 REMARK 500 HIS A 385 154.23 -47.64 REMARK 500 GLU B 57 36.09 -64.93 REMARK 500 SER B 60 -60.31 -22.92 REMARK 500 ARG B 62 -54.15 5.87 REMARK 500 GLU B 83 -68.38 -23.63 REMARK 500 HIS B 88 -36.00 -34.73 REMARK 500 GLU B 93 -65.30 -97.21 REMARK 500 ARG B 95 30.20 79.22 REMARK 500 VAL B 96 -167.40 -115.12 REMARK 500 PRO B 98 -27.69 -26.60 REMARK 500 THR B 120 -76.39 -48.70 REMARK 500 PHE B 124 -78.17 -77.48 REMARK 500 GLU B 125 47.33 -64.00 REMARK 500 THR B 126 -46.31 -167.67 REMARK 500 ASN B 128 71.62 69.65 REMARK 500 VAL B 159 143.54 -175.09 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 85 ASP A 86 141.11 REMARK 500 ILE A 337 SER A 338 -149.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 380 O1G REMARK 620 2 ATP B 380 O3G 55.6 REMARK 620 3 ATP B 380 O2B 80.6 65.1 REMARK 620 4 HOH B 926 O 111.9 56.4 69.6 REMARK 620 5 HOH B 930 O 144.1 107.9 63.7 60.3 REMARK 620 6 HOH B 931 O 117.3 168.0 105.4 129.0 72.0 REMARK 620 7 HOH B 936 O 131.8 109.8 139.6 75.0 82.3 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAR B 901 DBREF 3BUZ A 1 413 UNP Q46220 Q46220_CLOPE 42 454 DBREF 3BUZ B 1 375 UNP P68135 ACTS_RABIT 3 377 SEQRES 1 A 413 ALA PHE ILE GLU ARG PRO GLU ASP PHE LEU LYS ASP LYS SEQRES 2 A 413 GLU ASN ALA ILE GLN TRP GLU LYS LYS GLU ALA GLU ARG SEQRES 3 A 413 VAL GLU LYS ASN LEU ASP THR LEU GLU LYS GLU ALA LEU SEQRES 4 A 413 GLU LEU TYR LYS LYS ASP SER GLU GLN ILE SER ASN TYR SEQRES 5 A 413 SER GLN THR ARG GLN TYR PHE TYR ASP TYR GLN ILE GLU SEQRES 6 A 413 SER ASN PRO ARG GLU LYS GLU TYR LYS ASN LEU ARG ASN SEQRES 7 A 413 ALA ILE SER LYS ASN LYS ILE ASP LYS PRO ILE ASN VAL SEQRES 8 A 413 TYR TYR PHE GLU SER PRO GLU LYS PHE ALA PHE ASN LYS SEQRES 9 A 413 GLU ILE ARG THR GLU ASN GLN ASN GLU ILE SER LEU GLU SEQRES 10 A 413 LYS PHE ASN GLU LEU LYS GLU THR ILE GLN ASP LYS LEU SEQRES 11 A 413 PHE LYS GLN ASP GLY PHE LYS ASP VAL SER LEU TYR GLU SEQRES 12 A 413 PRO GLY ASN GLY ASP GLU LYS PRO THR PRO LEU LEU ILE SEQRES 13 A 413 HIS LEU LYS LEU PRO LYS ASN THR GLY MET LEU PRO TYR SEQRES 14 A 413 ILE ASN SER ASN ASP VAL LYS THR LEU ILE GLU GLN ASP SEQRES 15 A 413 TYR SER ILE LYS ILE ASP LYS ILE VAL ARG ILE VAL ILE SEQRES 16 A 413 GLU GLY LYS GLN TYR ILE LYS ALA GLU ALA SER ILE VAL SEQRES 17 A 413 ASN SER LEU ASP PHE LYS ASP ASP VAL SER LYS GLY ASP SEQRES 18 A 413 LEU TRP GLY LYS GLU ASN TYR SER ASP TRP SER ASN LYS SEQRES 19 A 413 LEU THR PRO ASN GLU LEU ALA ASP VAL ASN ASP TYR MET SEQRES 20 A 413 ARG GLY GLY TYR THR ALA ILE ASN ASN TYR LEU ILE SER SEQRES 21 A 413 ASN GLY PRO LEU ASN ASN PRO ASN PRO GLU LEU ASP SER SEQRES 22 A 413 LYS VAL ASN ASN ILE GLU ASN ALA LEU LYS LEU THR PRO SEQRES 23 A 413 ILE PRO SER ASN LEU ILE VAL TYR ARG ARG SER GLY PRO SEQRES 24 A 413 GLN GLU PHE GLY LEU THR LEU THR SER PRO GLU TYR ASP SEQRES 25 A 413 PHE ASN LYS ILE GLU ASN ILE ASP ALA PHE LYS GLU LYS SEQRES 26 A 413 TRP GLU GLY LYS VAL ILE THR TYR PRO ASN PHE ILE SER SEQRES 27 A 413 THR SER ILE GLY SER VAL ASN MET SER ALA PHE ALA LYS SEQRES 28 A 413 ARG LYS ILE ILE LEU ARG ILE ASN ILE PRO LYS ASP SER SEQRES 29 A 413 PRO GLY ALA TYR LEU SER ALA ILE PRO GLY TYR ALA GLY SEQRES 30 A 413 GLU TYR GLU VAL LEU LEU ASN HIS GLY SER LYS PHE LYS SEQRES 31 A 413 ILE ASN LYS VAL ASP SER TYR LYS ASP GLY THR VAL THR SEQRES 32 A 413 LYS LEU ILE LEU ASP ALA THR LEU ILE ASN SEQRES 1 B 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 B 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 B 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 B 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 B 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 B 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 B 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 B 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 B 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 B 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 B 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 B 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 B 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 B 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 B 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 B 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 B 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 B 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 B 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 B 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 B 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 B 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 B 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 B 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 B 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 B 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 B 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 B 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 B 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE HET TAD A 500 43 HET CA B 500 1 HET ATP B 380 31 HET LAR B 901 29 HETNAM TAD BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE HETNAM 2 TAD DINUCLEOTIDE HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM LAR LATRUNCULIN A HETSYN LAR 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16- HETSYN 2 LAR DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2- HETSYN 3 LAR THIAZOLIDINONE FORMUL 3 TAD C20 H27 N7 O13 P2 S FORMUL 4 CA CA 2+ FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 LAR C22 H31 N O5 S FORMUL 7 HOH *79(H2 O) HELIX 1 1 ASP A 12 LEU A 31 1 20 HELIX 2 2 ASP A 32 ASP A 45 1 14 HELIX 3 3 ASP A 45 THR A 55 1 11 HELIX 4 4 ARG A 56 PHE A 59 5 4 HELIX 5 5 TYR A 60 SER A 66 1 7 HELIX 6 6 ARG A 69 ASN A 83 1 15 HELIX 7 7 SER A 96 ALA A 101 5 6 HELIX 8 8 SER A 115 ILE A 126 1 12 HELIX 9 9 ASP A 216 SER A 229 1 14 HELIX 10 10 ASP A 230 LEU A 235 1 6 HELIX 11 11 GLU A 239 ASN A 244 1 6 HELIX 12 12 ASN A 255 SER A 260 1 6 HELIX 13 13 LEU A 271 LYS A 283 1 13 HELIX 14 14 PRO A 299 GLY A 303 5 5 HELIX 15 15 SER A 308 ASP A 312 5 5 HELIX 16 16 LYS A 315 GLU A 327 1 13 HELIX 17 17 MET A 346 ALA A 350 5 5 HELIX 18 18 SER A 370 ILE A 372 5 3 HELIX 19 19 ASN B 78 ASN B 92 1 15 HELIX 20 20 PRO B 112 GLU B 125 1 14 HELIX 21 21 GLN B 137 ALA B 144 1 8 HELIX 22 22 PRO B 172 ILE B 175 5 4 HELIX 23 23 ALA B 181 GLU B 195 1 15 HELIX 24 24 GLU B 205 CYS B 217 1 13 HELIX 25 25 ASP B 222 SER B 232 1 11 HELIX 26 26 ASN B 252 THR B 260 1 9 HELIX 27 27 LEU B 261 GLY B 268 5 8 HELIX 28 28 GLY B 273 LYS B 284 1 12 HELIX 29 29 ASP B 286 ALA B 295 1 10 HELIX 30 30 GLY B 301 MET B 305 5 5 HELIX 31 31 GLY B 308 ALA B 319 1 12 HELIX 32 32 PRO B 332 LYS B 336 5 5 HELIX 33 33 TYR B 337 SER B 348 1 12 HELIX 34 34 LEU B 349 TRP B 356 5 8 HELIX 35 35 LYS B 359 GLU B 364 1 6 HELIX 36 36 GLY B 366 HIS B 371 5 6 SHEET 1 A 5 ILE A 89 GLU A 95 0 SHEET 2 A 5 LEU A 154 LEU A 160 -1 O ILE A 156 N TYR A 93 SHEET 3 A 5 LYS A 198 VAL A 208 1 O ILE A 201 N LEU A 155 SHEET 4 A 5 ASP A 174 ILE A 195 -1 N LYS A 189 O GLU A 204 SHEET 5 A 5 LEU A 130 VAL A 139 -1 N GLN A 133 O TYR A 183 SHEET 1 B 5 ILE A 89 GLU A 95 0 SHEET 2 B 5 LEU A 154 LEU A 160 -1 O ILE A 156 N TYR A 93 SHEET 3 B 5 LYS A 198 VAL A 208 1 O ILE A 201 N LEU A 155 SHEET 4 B 5 ASP A 174 ILE A 195 -1 N LYS A 189 O GLU A 204 SHEET 5 B 5 LEU A 167 ASN A 171 -1 N LEU A 167 O LEU A 178 SHEET 1 C 5 LEU A 291 SER A 297 0 SHEET 2 C 5 ILE A 354 ILE A 360 -1 O ILE A 354 N SER A 297 SHEET 3 C 5 VAL A 402 LEU A 411 1 O LEU A 405 N ILE A 355 SHEET 4 C 5 SER A 387 ASP A 399 -1 N LYS A 393 O ASP A 408 SHEET 5 C 5 VAL A 330 TYR A 333 -1 N TYR A 333 O SER A 387 SHEET 1 D 3 ILE A 337 SER A 340 0 SHEET 2 D 3 GLU A 380 LEU A 383 -1 O VAL A 381 N THR A 339 SHEET 3 D 3 GLY A 366 TYR A 368 -1 N ALA A 367 O LEU A 382 SHEET 1 E 6 ALA B 29 PRO B 32 0 SHEET 2 E 6 LEU B 16 PHE B 21 -1 N ALA B 19 O ALA B 29 SHEET 3 E 6 LEU B 8 ASN B 12 -1 N ASP B 11 O LYS B 18 SHEET 4 E 6 THR B 103 GLU B 107 1 O LEU B 104 N LEU B 8 SHEET 5 E 6 ALA B 131 ILE B 136 1 O TYR B 133 N LEU B 105 SHEET 6 E 6 ILE B 357 THR B 358 -1 O ILE B 357 N MET B 132 SHEET 1 F 3 TYR B 53 VAL B 54 0 SHEET 2 F 3 VAL B 35 PRO B 38 -1 N GLY B 36 O TYR B 53 SHEET 3 F 3 LEU B 65 LYS B 68 -1 O THR B 66 N ARG B 37 SHEET 1 G 2 ILE B 71 GLU B 72 0 SHEET 2 G 2 ILE B 75 ILE B 76 -1 O ILE B 75 N GLU B 72 SHEET 1 H 3 TYR B 169 ALA B 170 0 SHEET 2 H 3 THR B 160 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 H 3 MET B 176 LEU B 178 -1 O MET B 176 N ASN B 162 SHEET 1 I 5 TYR B 169 ALA B 170 0 SHEET 2 I 5 THR B 160 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 I 5 GLY B 150 SER B 155 -1 N GLY B 150 O ILE B 165 SHEET 4 I 5 ASN B 297 SER B 300 1 O SER B 300 N LEU B 153 SHEET 5 I 5 ILE B 329 ILE B 330 1 O ILE B 330 N ASN B 297 SHEET 1 J 2 LYS B 238 GLU B 241 0 SHEET 2 J 2 VAL B 247 ILE B 250 -1 O ILE B 248 N TYR B 240 LINK O1G ATP B 380 CA CA B 500 1555 1555 2.95 LINK O3G ATP B 380 CA CA B 500 1555 1555 2.35 LINK O2B ATP B 380 CA CA B 500 1555 1555 2.37 LINK CA CA B 500 O HOH B 926 1555 1555 2.31 LINK CA CA B 500 O HOH B 930 1555 1555 2.08 LINK CA CA B 500 O HOH B 931 1555 1555 2.61 LINK CA CA B 500 O HOH B 936 1555 1555 2.29 SITE 1 AC1 4 HOH B 926 HOH B 930 HOH B 931 HOH B 936 SITE 1 AC2 15 TYR A 251 ASN A 255 ILE A 259 ARG A 295 SITE 2 AC2 15 ARG A 296 GLY A 298 GLN A 300 GLU A 301 SITE 3 AC2 15 TYR A 333 PRO A 334 ASN A 335 SER A 338 SITE 4 AC2 15 PHE A 349 ARG A 352 GLU A 380 SITE 1 AC3 23 GLY B 13 SER B 14 GLY B 15 LEU B 16 SITE 2 AC3 23 LYS B 18 GLY B 156 ASP B 157 GLY B 158 SITE 3 AC3 23 GLY B 182 ARG B 210 LYS B 213 GLU B 214 SITE 4 AC3 23 GLY B 301 GLY B 302 THR B 303 MET B 305 SITE 5 AC3 23 TYR B 306 LYS B 336 HOH B 906 HOH B 925 SITE 6 AC3 23 HOH B 926 HOH B 929 HOH B 930 SITE 1 AC4 9 LEU B 16 PRO B 32 GLN B 59 TYR B 69 SITE 2 AC4 9 ASP B 157 ARG B 183 THR B 186 GLU B 207 SITE 3 AC4 9 ARG B 210 CRYST1 57.014 126.344 147.127 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006797 0.00000