data_3BV8 # _entry.id 3BV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BV8 pdb_00003bv8 10.2210/pdb3bv8/pdb RCSB RCSB045997 ? ? WWPDB D_1000045997 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC86675.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3BV8 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-01-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Duggan, E.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuff, M.E.' 1 ? primary 'Duggan, E.' 2 ? primary 'Clancy, S.' 3 ? primary 'Joachimiak, A.' 4 ? # _cell.length_a 76.503 _cell.length_b 76.503 _cell.length_c 93.862 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3BV8 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 3BV8 _symmetry.Int_Tables_number 182 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tetrahydrodipicolinate acetyltransferase' 10097.082 1 ? S20F 'N-terminal domain: Residues 5-88' ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNALTAEEIIQYISDAKKFTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYEAYGSQFEDIEIE(MSE)D RRNSAIPLKDL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNALTAEEIIQYISDAKKFTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYEAYGSQFEDIEIEMDRRNS AIPLKDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC86675.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 LEU n 1 5 THR n 1 6 ALA n 1 7 GLU n 1 8 GLU n 1 9 ILE n 1 10 ILE n 1 11 GLN n 1 12 TYR n 1 13 ILE n 1 14 SER n 1 15 ASP n 1 16 ALA n 1 17 LYS n 1 18 LYS n 1 19 PHE n 1 20 THR n 1 21 PRO n 1 22 ILE n 1 23 LYS n 1 24 VAL n 1 25 TYR n 1 26 LEU n 1 27 ASN n 1 28 GLY n 1 29 ASN n 1 30 PHE n 1 31 GLU n 1 32 GLY n 1 33 ILE n 1 34 THR n 1 35 TYR n 1 36 PRO n 1 37 GLU n 1 38 SER n 1 39 PHE n 1 40 LYS n 1 41 VAL n 1 42 PHE n 1 43 GLY n 1 44 SER n 1 45 GLU n 1 46 GLN n 1 47 SER n 1 48 LYS n 1 49 VAL n 1 50 ILE n 1 51 PHE n 1 52 CYS n 1 53 GLU n 1 54 ALA n 1 55 ASP n 1 56 ASP n 1 57 TRP n 1 58 LYS n 1 59 PRO n 1 60 PHE n 1 61 TYR n 1 62 GLU n 1 63 ALA n 1 64 TYR n 1 65 GLY n 1 66 SER n 1 67 GLN n 1 68 PHE n 1 69 GLU n 1 70 ASP n 1 71 ILE n 1 72 GLU n 1 73 ILE n 1 74 GLU n 1 75 MSE n 1 76 ASP n 1 77 ARG n 1 78 ARG n 1 79 ASN n 1 80 SER n 1 81 ALA n 1 82 ILE n 1 83 PRO n 1 84 LEU n 1 85 LYS n 1 86 ASP n 1 87 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene 'dapD, SAV1397' _entity_src_gen.gene_src_species 'Staphylococcus aureus' _entity_src_gen.gene_src_strain Mu50 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 158878 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700699 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7A2S0_STAAM _struct_ref.pdbx_db_accession Q7A2S0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYEAYGSQFEDIEIEMDRRNSAIP LKDL ; _struct_ref.pdbx_align_begin 5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BV8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 87 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7A2S0 _struct_ref_seq.db_align_beg 5 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 88 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 88 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BV8 SER A 1 ? UNP Q7A2S0 ? ? 'expression tag' 2 1 1 3BV8 ASN A 2 ? UNP Q7A2S0 ? ? 'expression tag' 3 2 1 3BV8 ALA A 3 ? UNP Q7A2S0 ? ? 'expression tag' 4 3 1 3BV8 PHE A 19 ? UNP Q7A2S0 SER 20 'engineered mutation' 20 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3BV8 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 68.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.4M Sodium malonate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2007-08-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97921 1.0 2 0.97942 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97921, 0.97942' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 3BV8 _reflns.d_resolution_high 1.750 _reflns.d_resolution_low 50.000 _reflns.number_obs 16945 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_netI_over_sigmaI 10.300 _reflns.pdbx_chi_squared 1.780 _reflns.pdbx_redundancy 9.500 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 16945 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 20.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.79 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.522 _reflns_shell.meanI_over_sigI_obs 4.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.924 _reflns_shell.pdbx_redundancy 9.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1105 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BV8 _refine.ls_d_res_high 1.750 _refine.ls_d_res_low 29.660 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.290 _refine.ls_number_reflns_obs 16822 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.197 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 854 _refine.B_iso_mean 23.855 _refine.aniso_B[1][1] 0.930 _refine.aniso_B[2][2] 0.930 _refine.aniso_B[3][3] -1.400 _refine.aniso_B[1][2] 0.470 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.pdbx_overall_ESU_R 0.088 _refine.pdbx_overall_ESU_R_Free 0.086 _refine.overall_SU_ML 0.054 _refine.overall_SU_B 3.239 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16822 _refine.ls_R_factor_all 0.176 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 695 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 851 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 29.660 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 835 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1140 1.378 1.963 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 108 6.167 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42 39.276 25.952 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 153 12.710 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 27.590 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 116 0.100 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 665 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 376 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 609 0.307 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 114 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 5 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 48 0.202 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 40 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 500 0.733 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 826 1.389 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 345 2.305 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 314 3.804 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.75 _refine_ls_shell.d_res_low 1.80 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.450 _refine_ls_shell.number_reflns_R_work 1143 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.R_factor_R_free 0.364 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1203 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BV8 _struct.title 'Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BV8 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;acetyltransferase, pfam08503, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? LYS A 17 ? THR A 6 LYS A 18 1 ? 13 HELX_P HELX_P2 2 ALA A 54 ? GLY A 65 ? ALA A 55 GLY A 66 1 ? 12 HELX_P HELX_P3 3 ARG A 77 ? ALA A 81 ? ARG A 78 ALA A 82 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 74 C ? ? ? 1_555 A MSE 75 N ? ? A GLU 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 75 C ? ? ? 1_555 A ASP 76 N ? ? A MSE 76 A ASP 77 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? A PHE 19 O ? ? ? 1_555 B NA . NA ? ? A PHE 20 A NA 101 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc2 metalc ? ? A ASN 79 OD1 ? ? ? 1_555 B NA . NA ? ? A ASN 80 A NA 101 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 108 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc4 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 115 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 121 1_555 ? ? ? ? ? ? ? 2.153 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 40 ? SER A 44 ? LYS A 41 SER A 45 A 2 SER A 47 ? GLU A 53 ? SER A 48 GLU A 54 A 3 PRO A 21 ? GLY A 28 ? PRO A 22 GLY A 29 A 4 PHE A 68 ? MSE A 75 ? PHE A 69 MSE A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 42 ? N PHE A 43 O VAL A 49 ? O VAL A 50 A 2 3 O CYS A 52 ? O CYS A 53 N ILE A 22 ? N ILE A 23 A 3 4 N ASN A 27 ? N ASN A 28 O GLU A 69 ? O GLU A 70 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 6 'BINDING SITE FOR RESIDUE NA A 101' AC2 Software A GOL 102 ? 6 'BINDING SITE FOR RESIDUE GOL A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 17 ? LYS A 18 . ? 1_555 ? 2 AC1 6 PHE A 19 ? PHE A 20 . ? 1_555 ? 3 AC1 6 ASN A 79 ? ASN A 80 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 108 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 115 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 121 . ? 1_555 ? 7 AC2 6 TYR A 61 ? TYR A 62 . ? 1_555 ? 8 AC2 6 GLY A 65 ? GLY A 66 . ? 1_555 ? 9 AC2 6 PHE A 68 ? PHE A 69 . ? 1_555 ? 10 AC2 6 GLU A 69 ? GLU A 70 . ? 1_555 ? 11 AC2 6 HOH D . ? HOH A 136 . ? 1_555 ? 12 AC2 6 HOH D . ? HOH A 239 . ? 1_555 ? # _atom_sites.entry_id 3BV8 _atom_sites.fract_transf_matrix[1][1] 0.013071 _atom_sites.fract_transf_matrix[1][2] 0.007547 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010654 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 ? ? ? A . n A 1 2 ASN 2 3 ? ? ? A . n A 1 3 ALA 3 4 4 ALA ALA A . n A 1 4 LEU 4 5 5 LEU LEU A . n A 1 5 THR 5 6 6 THR THR A . n A 1 6 ALA 6 7 7 ALA ALA A . n A 1 7 GLU 7 8 8 GLU GLU A . n A 1 8 GLU 8 9 9 GLU GLU A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ILE 10 11 11 ILE ILE A . n A 1 11 GLN 11 12 12 GLN GLN A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 ILE 13 14 14 ILE ILE A . n A 1 14 SER 14 15 15 SER SER A . n A 1 15 ASP 15 16 16 ASP ASP A . n A 1 16 ALA 16 17 17 ALA ALA A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 LYS 18 19 19 LYS LYS A . n A 1 19 PHE 19 20 20 PHE PHE A . n A 1 20 THR 20 21 21 THR THR A . n A 1 21 PRO 21 22 22 PRO PRO A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 LYS 23 24 24 LYS LYS A . n A 1 24 VAL 24 25 25 VAL VAL A . n A 1 25 TYR 25 26 26 TYR TYR A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 ASN 27 28 28 ASN ASN A . n A 1 28 GLY 28 29 29 GLY GLY A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 PHE 30 31 31 PHE PHE A . n A 1 31 GLU 31 32 32 GLU GLU A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 THR 34 35 35 THR THR A . n A 1 35 TYR 35 36 36 TYR TYR A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 GLU 37 38 38 GLU GLU A . n A 1 38 SER 38 39 39 SER SER A . n A 1 39 PHE 39 40 40 PHE PHE A . n A 1 40 LYS 40 41 41 LYS LYS A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 GLY 43 44 44 GLY GLY A . n A 1 44 SER 44 45 45 SER SER A . n A 1 45 GLU 45 46 46 GLU GLU A . n A 1 46 GLN 46 47 47 GLN GLN A . n A 1 47 SER 47 48 48 SER SER A . n A 1 48 LYS 48 49 49 LYS LYS A . n A 1 49 VAL 49 50 50 VAL VAL A . n A 1 50 ILE 50 51 51 ILE ILE A . n A 1 51 PHE 51 52 52 PHE PHE A . n A 1 52 CYS 52 53 53 CYS CYS A . n A 1 53 GLU 53 54 54 GLU GLU A . n A 1 54 ALA 54 55 55 ALA ALA A . n A 1 55 ASP 55 56 56 ASP ASP A . n A 1 56 ASP 56 57 57 ASP ASP A . n A 1 57 TRP 57 58 58 TRP TRP A . n A 1 58 LYS 58 59 59 LYS LYS A . n A 1 59 PRO 59 60 60 PRO PRO A . n A 1 60 PHE 60 61 61 PHE PHE A . n A 1 61 TYR 61 62 62 TYR TYR A . n A 1 62 GLU 62 63 63 GLU GLU A . n A 1 63 ALA 63 64 64 ALA ALA A . n A 1 64 TYR 64 65 65 TYR TYR A . n A 1 65 GLY 65 66 66 GLY GLY A . n A 1 66 SER 66 67 67 SER SER A . n A 1 67 GLN 67 68 68 GLN GLN A . n A 1 68 PHE 68 69 69 PHE PHE A . n A 1 69 GLU 69 70 70 GLU GLU A . n A 1 70 ASP 70 71 71 ASP ASP A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 GLU 72 73 73 GLU GLU A . n A 1 73 ILE 73 74 74 ILE ILE A . n A 1 74 GLU 74 75 75 GLU GLU A . n A 1 75 MSE 75 76 76 MSE MSE A . n A 1 76 ASP 76 77 77 ASP ASP A . n A 1 77 ARG 77 78 78 ARG ARG A . n A 1 78 ARG 78 79 79 ARG ARG A . n A 1 79 ASN 79 80 80 ASN ASN A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 ILE 82 83 83 ILE ILE A . n A 1 83 PRO 83 84 84 PRO PRO A . n A 1 84 LEU 84 85 85 LEU LEU A . n A 1 85 LYS 85 86 86 LYS LYS A . n A 1 86 ASP 86 87 87 ASP ASP A . n A 1 87 LEU 87 88 88 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 101 NA NA A . C 3 GOL 1 102 102 GOL GOL A . D 4 HOH 1 103 1 HOH HOH A . D 4 HOH 2 104 2 HOH HOH A . D 4 HOH 3 105 3 HOH HOH A . D 4 HOH 4 106 4 HOH HOH A . D 4 HOH 5 107 5 HOH HOH A . D 4 HOH 6 108 6 HOH HOH A . D 4 HOH 7 109 7 HOH HOH A . D 4 HOH 8 110 8 HOH HOH A . D 4 HOH 9 111 9 HOH HOH A . D 4 HOH 10 112 10 HOH HOH A . D 4 HOH 11 113 11 HOH HOH A . D 4 HOH 12 114 12 HOH HOH A . D 4 HOH 13 115 13 HOH HOH A . D 4 HOH 14 116 14 HOH HOH A . D 4 HOH 15 117 15 HOH HOH A . D 4 HOH 16 118 16 HOH HOH A . D 4 HOH 17 119 17 HOH HOH A . D 4 HOH 18 120 18 HOH HOH A . D 4 HOH 19 121 19 HOH HOH A . D 4 HOH 20 122 20 HOH HOH A . D 4 HOH 21 123 21 HOH HOH A . D 4 HOH 22 124 22 HOH HOH A . D 4 HOH 23 125 23 HOH HOH A . D 4 HOH 24 126 24 HOH HOH A . D 4 HOH 25 127 25 HOH HOH A . D 4 HOH 26 128 26 HOH HOH A . D 4 HOH 27 129 27 HOH HOH A . D 4 HOH 28 130 28 HOH HOH A . D 4 HOH 29 131 29 HOH HOH A . D 4 HOH 30 132 30 HOH HOH A . D 4 HOH 31 133 31 HOH HOH A . D 4 HOH 32 134 32 HOH HOH A . D 4 HOH 33 135 33 HOH HOH A . D 4 HOH 34 136 34 HOH HOH A . D 4 HOH 35 137 35 HOH HOH A . D 4 HOH 36 138 36 HOH HOH A . D 4 HOH 37 139 37 HOH HOH A . D 4 HOH 38 140 38 HOH HOH A . D 4 HOH 39 141 39 HOH HOH A . D 4 HOH 40 142 40 HOH HOH A . D 4 HOH 41 143 41 HOH HOH A . D 4 HOH 42 144 42 HOH HOH A . D 4 HOH 43 145 43 HOH HOH A . D 4 HOH 44 146 44 HOH HOH A . D 4 HOH 45 147 45 HOH HOH A . D 4 HOH 46 148 46 HOH HOH A . D 4 HOH 47 149 47 HOH HOH A . D 4 HOH 48 150 48 HOH HOH A . D 4 HOH 49 151 49 HOH HOH A . D 4 HOH 50 152 50 HOH HOH A . D 4 HOH 51 153 51 HOH HOH A . D 4 HOH 52 154 52 HOH HOH A . D 4 HOH 53 155 53 HOH HOH A . D 4 HOH 54 156 54 HOH HOH A . D 4 HOH 55 157 55 HOH HOH A . D 4 HOH 56 158 56 HOH HOH A . D 4 HOH 57 159 57 HOH HOH A . D 4 HOH 58 160 58 HOH HOH A . D 4 HOH 59 161 59 HOH HOH A . D 4 HOH 60 162 60 HOH HOH A . D 4 HOH 61 163 61 HOH HOH A . D 4 HOH 62 164 62 HOH HOH A . D 4 HOH 63 165 63 HOH HOH A . D 4 HOH 64 166 64 HOH HOH A . D 4 HOH 65 167 65 HOH HOH A . D 4 HOH 66 168 66 HOH HOH A . D 4 HOH 67 169 67 HOH HOH A . D 4 HOH 68 170 68 HOH HOH A . D 4 HOH 69 171 69 HOH HOH A . D 4 HOH 70 172 70 HOH HOH A . D 4 HOH 71 173 71 HOH HOH A . D 4 HOH 72 174 72 HOH HOH A . D 4 HOH 73 175 73 HOH HOH A . D 4 HOH 74 176 74 HOH HOH A . D 4 HOH 75 177 75 HOH HOH A . D 4 HOH 76 178 76 HOH HOH A . D 4 HOH 77 179 77 HOH HOH A . D 4 HOH 78 180 78 HOH HOH A . D 4 HOH 79 181 79 HOH HOH A . D 4 HOH 80 182 80 HOH HOH A . D 4 HOH 81 183 81 HOH HOH A . D 4 HOH 82 184 82 HOH HOH A . D 4 HOH 83 185 83 HOH HOH A . D 4 HOH 84 186 84 HOH HOH A . D 4 HOH 85 187 85 HOH HOH A . D 4 HOH 86 188 86 HOH HOH A . D 4 HOH 87 189 87 HOH HOH A . D 4 HOH 88 190 88 HOH HOH A . D 4 HOH 89 191 89 HOH HOH A . D 4 HOH 90 192 90 HOH HOH A . D 4 HOH 91 193 91 HOH HOH A . D 4 HOH 92 194 92 HOH HOH A . D 4 HOH 93 195 93 HOH HOH A . D 4 HOH 94 196 94 HOH HOH A . D 4 HOH 95 197 95 HOH HOH A . D 4 HOH 96 198 96 HOH HOH A . D 4 HOH 97 199 97 HOH HOH A . D 4 HOH 98 200 98 HOH HOH A . D 4 HOH 99 201 99 HOH HOH A . D 4 HOH 100 202 100 HOH HOH A . D 4 HOH 101 203 101 HOH HOH A . D 4 HOH 102 204 102 HOH HOH A . D 4 HOH 103 205 103 HOH HOH A . D 4 HOH 104 206 104 HOH HOH A . D 4 HOH 105 207 105 HOH HOH A . D 4 HOH 106 208 106 HOH HOH A . D 4 HOH 107 209 107 HOH HOH A . D 4 HOH 108 210 108 HOH HOH A . D 4 HOH 109 211 109 HOH HOH A . D 4 HOH 110 212 110 HOH HOH A . D 4 HOH 111 213 111 HOH HOH A . D 4 HOH 112 214 112 HOH HOH A . D 4 HOH 113 215 113 HOH HOH A . D 4 HOH 114 216 114 HOH HOH A . D 4 HOH 115 217 115 HOH HOH A . D 4 HOH 116 218 116 HOH HOH A . D 4 HOH 117 219 117 HOH HOH A . D 4 HOH 118 220 118 HOH HOH A . D 4 HOH 119 221 119 HOH HOH A . D 4 HOH 120 222 120 HOH HOH A . D 4 HOH 121 223 121 HOH HOH A . D 4 HOH 122 224 122 HOH HOH A . D 4 HOH 123 225 123 HOH HOH A . D 4 HOH 124 226 124 HOH HOH A . D 4 HOH 125 227 125 HOH HOH A . D 4 HOH 126 228 126 HOH HOH A . D 4 HOH 127 229 127 HOH HOH A . D 4 HOH 128 230 128 HOH HOH A . D 4 HOH 129 231 129 HOH HOH A . D 4 HOH 130 232 130 HOH HOH A . D 4 HOH 131 233 131 HOH HOH A . D 4 HOH 132 234 132 HOH HOH A . D 4 HOH 133 235 133 HOH HOH A . D 4 HOH 134 236 134 HOH HOH A . D 4 HOH 135 237 135 HOH HOH A . D 4 HOH 136 238 136 HOH HOH A . D 4 HOH 137 239 137 HOH HOH A . D 4 HOH 138 240 138 HOH HOH A . D 4 HOH 139 241 139 HOH HOH A . D 4 HOH 140 242 140 HOH HOH A . D 4 HOH 141 243 141 HOH HOH A . D 4 HOH 142 244 142 HOH HOH A . D 4 HOH 143 245 143 HOH HOH A . D 4 HOH 144 246 144 HOH HOH A . D 4 HOH 145 247 145 HOH HOH A . D 4 HOH 146 248 146 HOH HOH A . D 4 HOH 147 249 147 HOH HOH A . D 4 HOH 148 250 148 HOH HOH A . D 4 HOH 149 251 149 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 75 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 76 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2,3,4,5,6 A,B,C,D # _pdbx_struct_assembly_prop.biol_id 2 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 16460 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 76.5030000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 38.2515000000 -0.8660254038 -0.5000000000 0.0000000000 66.2535414657 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 38.2515000000 -0.8660254038 -0.5000000000 0.0000000000 66.2535414657 0.0000000000 0.0000000000 -1.0000000000 46.9310000000 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 76.5030000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.9310000000 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.9310000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 103 ? D HOH . 2 1 A HOH 111 ? D HOH . 3 1 A HOH 113 ? D HOH . 4 1 A HOH 152 ? D HOH . 5 1 A HOH 236 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 19 ? A PHE 20 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OD1 ? A ASN 79 ? A ASN 80 ? 1_555 92.1 ? 2 O ? A PHE 19 ? A PHE 20 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 108 ? 1_555 87.2 ? 3 OD1 ? A ASN 79 ? A ASN 80 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 108 ? 1_555 96.0 ? 4 O ? A PHE 19 ? A PHE 20 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 115 ? 1_555 163.4 ? 5 OD1 ? A ASN 79 ? A ASN 80 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 115 ? 1_555 103.7 ? 6 O ? D HOH . ? A HOH 108 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 115 ? 1_555 95.9 ? 7 O ? A PHE 19 ? A PHE 20 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 121 ? 1_555 86.1 ? 8 OD1 ? A ASN 79 ? A ASN 80 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 121 ? 1_555 92.8 ? 9 O ? D HOH . ? A HOH 108 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 121 ? 1_555 169.1 ? 10 O ? D HOH . ? A HOH 115 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 121 ? 1_555 88.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_conn_type 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.conn_type_id' 7 4 'Structure model' '_struct_conn.id' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 4 'Structure model' '_struct_conn_type.id' 23 4 'Structure model' '_struct_ref_seq_dif.details' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 47.9946 _pdbx_refine_tls.origin_y 28.7500 _pdbx_refine_tls.origin_z 35.2154 _pdbx_refine_tls.T[1][1] -0.0554 _pdbx_refine_tls.T[2][2] -0.0386 _pdbx_refine_tls.T[3][3] -0.0479 _pdbx_refine_tls.T[1][2] -0.0204 _pdbx_refine_tls.T[1][3] -0.0126 _pdbx_refine_tls.T[2][3] -0.0120 _pdbx_refine_tls.L[1][1] 0.5587 _pdbx_refine_tls.L[2][2] 0.4577 _pdbx_refine_tls.L[3][3] 2.1570 _pdbx_refine_tls.L[1][2] -0.2025 _pdbx_refine_tls.L[1][3] 0.5506 _pdbx_refine_tls.L[2][3] -0.3822 _pdbx_refine_tls.S[1][1] 0.0121 _pdbx_refine_tls.S[2][2] 0.0094 _pdbx_refine_tls.S[3][3] -0.0215 _pdbx_refine_tls.S[1][2] -0.0436 _pdbx_refine_tls.S[1][3] 0.0404 _pdbx_refine_tls.S[2][3] -0.0766 _pdbx_refine_tls.S[2][1] 0.0609 _pdbx_refine_tls.S[3][1] -0.1197 _pdbx_refine_tls.S[3][2] 0.0743 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 88 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 3 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 87 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 1.75 50.00 13940 0.200 0.000 2.380 2883 0.100 0.000 1.000 2 1.75 50.00 13898 6.200 0.720 0.890 2870 8.600 0.580 0.840 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 11.24 50.00 28 0.300 0.000 1.140 52 0.200 0.000 1.000 1 6.33 11.24 195 0.500 0.000 1.980 149 0.200 0.000 1.000 1 4.41 6.33 531 0.400 0.000 1.560 231 0.200 0.000 1.000 1 3.38 4.41 1013 0.300 0.000 1.190 313 0.200 0.000 1.000 1 2.74 3.38 1681 0.300 0.000 1.800 409 0.100 0.000 1.000 1 2.31 2.74 2479 0.200 0.000 2.710 494 0.100 0.000 1.000 1 1.99 2.31 3457 0.200 0.000 3.010 582 0.100 0.000 1.000 1 1.75 1.99 4556 0.200 0.000 5.240 653 0.000 0.000 1.000 2 11.24 50.00 28 5.000 2.920 0.740 50 6.200 1.450 0.670 2 6.33 11.24 195 5.200 2.280 0.570 149 6.900 1.730 0.570 2 4.41 6.33 531 5.600 1.920 0.620 228 7.500 1.310 0.650 2 3.38 4.41 1012 5.900 1.440 0.750 311 8.200 0.880 0.750 2 2.74 3.38 1681 5.300 1.230 0.780 409 8.000 0.770 0.750 2 2.31 2.74 2477 5.700 0.840 0.880 491 8.200 0.480 0.880 2 1.99 2.31 3448 6.100 0.540 0.970 581 9.100 0.360 0.920 2 1.75 1.99 4526 7.000 0.330 0.990 651 10.100 0.200 0.980 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.524 -0.176 -0.215 25.54709 0.000 2 Se -0.524 -0.177 -0.215 25.70739 -0.138 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 11.24 50.00 80 0.606 52 0.466 28 0.865 6.33 11.24 344 0.739 149 0.627 195 0.825 4.41 6.33 762 0.730 231 0.542 531 0.812 3.38 4.41 1326 0.656 313 0.400 1013 0.735 2.74 3.38 2090 0.625 409 0.403 1681 0.679 2.31 2.74 2973 0.526 494 0.246 2479 0.582 1.99 2.31 4039 0.395 582 0.189 3457 0.429 1.75 1.99 5209 0.254 653 0.086 4556 0.278 # _pdbx_phasing_dm.entry_id 3BV8 _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 16823 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.960 100.000 37.700 ? ? ? 0.891 ? ? 503 4.670 5.960 29.200 ? ? ? 0.942 ? ? 502 4.030 4.670 36.500 ? ? ? 0.949 ? ? 514 3.650 4.030 37.000 ? ? ? 0.940 ? ? 505 3.370 3.650 35.300 ? ? ? 0.931 ? ? 513 3.170 3.370 33.100 ? ? ? 0.947 ? ? 501 3.000 3.170 38.600 ? ? ? 0.930 ? ? 522 2.860 3.000 42.700 ? ? ? 0.925 ? ? 520 2.740 2.860 40.300 ? ? ? 0.913 ? ? 543 2.630 2.740 46.100 ? ? ? 0.890 ? ? 555 2.540 2.630 44.300 ? ? ? 0.878 ? ? 583 2.450 2.540 48.100 ? ? ? 0.860 ? ? 608 2.370 2.450 49.400 ? ? ? 0.864 ? ? 616 2.300 2.370 51.800 ? ? ? 0.857 ? ? 635 2.240 2.300 54.200 ? ? ? 0.838 ? ? 657 2.180 2.240 54.500 ? ? ? 0.848 ? ? 667 2.120 2.180 52.600 ? ? ? 0.828 ? ? 699 2.070 2.120 62.200 ? ? ? 0.849 ? ? 704 2.020 2.070 60.200 ? ? ? 0.836 ? ? 731 1.980 2.020 61.100 ? ? ? 0.848 ? ? 748 1.940 1.980 64.500 ? ? ? 0.815 ? ? 763 1.900 1.940 64.500 ? ? ? 0.805 ? ? 765 1.860 1.900 66.400 ? ? ? 0.772 ? ? 778 1.830 1.860 71.700 ? ? ? 0.749 ? ? 780 1.790 1.830 71.800 ? ? ? 0.732 ? ? 810 1.750 1.790 74.700 ? ? ? 0.704 ? ? 1101 # _phasing.method MAD # _phasing_MAD.entry_id 3BV8 _phasing_MAD.pdbx_d_res_high 1.75 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 16823 _phasing_MAD.pdbx_fom 0.447 _phasing_MAD.pdbx_reflns_centric 2883 _phasing_MAD.pdbx_fom_centric 0.285 _phasing_MAD.pdbx_reflns_acentric 13940 _phasing_MAD.pdbx_fom_acentric 0.480 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? 18 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 144 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 248 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 2 ? A SER 1 2 1 Y 1 A ASN 3 ? A ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 GLYCEROL GOL 4 water HOH #