HEADER RECOMBINATION 07-JAN-08 3BVP TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL CATALYTIC DOMAIN OF TP901-1 TITLE 2 INTEGRASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TP901-1 INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL CATALYTIC DOMAIN; COMPND 5 SYNONYM: INT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS PHAGE TP901-1; SOURCE 3 GENE: INT; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGV1216 KEYWDS DNA RECOMBINASE, RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR P.YUAN,G.D.VAN DUYNE REVDAT 6 21-FEB-24 3BVP 1 SEQADV REVDAT 5 25-OCT-17 3BVP 1 REMARK REVDAT 4 21-MAR-12 3BVP 1 JRNL REVDAT 3 13-JUL-11 3BVP 1 VERSN REVDAT 2 24-FEB-09 3BVP 1 VERSN REVDAT 1 12-AUG-08 3BVP 0 JRNL AUTH P.YUAN,K.GUPTA,G.D.VAN DUYNE JRNL TITL TETRAMERIC STRUCTURE OF A SERINE INTEGRASE CATALYTIC DOMAIN. JRNL REF STRUCTURE V. 16 1275 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18682229 JRNL DOI 10.1016/J.STR.2008.04.018 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 23494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.93000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -3.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2179 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2938 ; 1.212 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 4.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;35.652 ;24.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;16.294 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1606 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1014 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1547 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1371 ; 0.912 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2144 ; 1.475 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 918 ; 0.949 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 792 ; 1.436 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 64.1042 24.5778 -2.3512 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: -0.2465 REMARK 3 T33: -0.0026 T12: 0.0519 REMARK 3 T13: 0.1402 T23: 0.1019 REMARK 3 L TENSOR REMARK 3 L11: 5.6047 L22: 3.5100 REMARK 3 L33: 8.2312 L12: -1.0724 REMARK 3 L13: -1.1784 L23: -0.8115 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: -0.3786 S13: -1.0193 REMARK 3 S21: -0.0953 S22: -0.3258 S23: 0.2517 REMARK 3 S31: 0.9408 S32: -0.0616 S33: 0.4056 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 56.3982 33.0371 -2.6651 REMARK 3 T TENSOR REMARK 3 T11: -0.1035 T22: -0.3017 REMARK 3 T33: -0.2043 T12: -0.0247 REMARK 3 T13: 0.0910 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.5524 L22: 5.0638 REMARK 3 L33: 11.5625 L12: -1.5553 REMARK 3 L13: -1.3978 L23: 0.6442 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: -0.0263 S13: -0.6442 REMARK 3 S21: -0.2266 S22: -0.1665 S23: 0.3689 REMARK 3 S31: 0.5248 S32: -0.4845 S33: 0.3338 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5004 45.0614 -7.8908 REMARK 3 T TENSOR REMARK 3 T11: -0.2387 T22: -0.2976 REMARK 3 T33: -0.2957 T12: -0.0639 REMARK 3 T13: 0.0342 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 4.4598 L22: 10.4413 REMARK 3 L33: 46.7545 L12: -3.5255 REMARK 3 L13: 5.4406 L23: -15.7438 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.1107 S13: -0.2478 REMARK 3 S21: -0.7051 S22: -0.2891 S23: 0.1910 REMARK 3 S31: 1.2979 S32: -0.5247 S33: 0.3578 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): 66.7216 44.9988 22.1192 REMARK 3 T TENSOR REMARK 3 T11: -0.1904 T22: -0.1464 REMARK 3 T33: -0.1870 T12: -0.1226 REMARK 3 T13: -0.1561 T23: 0.1565 REMARK 3 L TENSOR REMARK 3 L11: 9.8592 L22: 7.5416 REMARK 3 L33: 8.1754 L12: 2.1183 REMARK 3 L13: -0.4347 L23: -1.6001 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: -0.2014 S13: 0.0376 REMARK 3 S21: 0.0957 S22: -0.1422 S23: -0.5850 REMARK 3 S31: -0.3770 S32: 0.5995 S33: 0.2370 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 68.8295 45.7545 21.7340 REMARK 3 T TENSOR REMARK 3 T11: -0.1871 T22: 0.0373 REMARK 3 T33: -0.2124 T12: -0.1388 REMARK 3 T13: -0.1282 T23: 0.1681 REMARK 3 L TENSOR REMARK 3 L11: 4.2338 L22: 7.0732 REMARK 3 L33: 9.0504 L12: -0.8265 REMARK 3 L13: 0.4544 L23: -1.2744 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.2184 S13: 0.1879 REMARK 3 S21: -0.0019 S22: -0.3521 S23: -0.8317 REMARK 3 S31: -0.5480 S32: 0.7541 S33: 0.4550 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 61.8749 50.0213 14.2486 REMARK 3 T TENSOR REMARK 3 T11: -0.2121 T22: -0.1449 REMARK 3 T33: -0.2881 T12: -0.0667 REMARK 3 T13: -0.0825 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 5.0030 L22: 4.6956 REMARK 3 L33: 9.3793 L12: -1.6097 REMARK 3 L13: -0.3992 L23: 0.2928 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: -0.0558 S13: 0.2815 REMARK 3 S21: -0.1213 S22: -0.2289 S23: -0.3422 REMARK 3 S31: -0.4888 S32: 0.0526 S33: 0.3662 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0594 56.8024 7.6395 REMARK 3 T TENSOR REMARK 3 T11: -0.2600 T22: -0.2516 REMARK 3 T33: -0.3953 T12: -0.0771 REMARK 3 T13: -0.0706 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 32.4544 L22: 17.8063 REMARK 3 L33: 13.1578 L12: -21.9310 REMARK 3 L13: -15.1950 L23: 10.0436 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.8557 S13: 0.6140 REMARK 3 S21: -0.1525 S22: 0.1939 S23: -0.2981 REMARK 3 S31: -0.4976 S32: 0.3611 S33: -0.1851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-07; 08-JUL-07; 09-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.2.1; 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093; 0.9200, 0.9203, 0.9099; REMARK 200 1.0722, 1.0726, 1.0540 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111); NULL; REMARK 200 NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM REMARK 200 315; ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MG(OAC)2, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.28250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.61450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.61450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.64125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.61450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.61450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.92375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.61450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.61450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.64125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.61450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.61450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.92375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.28250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Y, X, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 14 REMARK 465 ASN B 15 REMARK 465 GLN B 16 REMARK 465 ALA B 17 REMARK 465 GLU B 18 REMARK 465 GLU B 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 138 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 186 O HOH B 199 2.13 REMARK 500 O HOH A 141 O HOH B 245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 36 C ALA A 36 O 0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 68 37.40 -86.45 REMARK 500 GLU B 56 86.95 -67.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 3BVP A 3 135 UNP Q38184 Q38184_9CAUD 3 135 DBREF 3BVP B 3 135 UNP Q38184 Q38184_9CAUD 3 135 SEQADV 3BVP MET A 1 UNP Q38184 EXPRESSION TAG SEQADV 3BVP ALA A 2 UNP Q38184 EXPRESSION TAG SEQADV 3BVP LEU A 136 UNP Q38184 EXPRESSION TAG SEQADV 3BVP GLU A 137 UNP Q38184 EXPRESSION TAG SEQADV 3BVP TYR A 138 UNP Q38184 EXPRESSION TAG SEQADV 3BVP MET B 1 UNP Q38184 EXPRESSION TAG SEQADV 3BVP ALA B 2 UNP Q38184 EXPRESSION TAG SEQADV 3BVP LEU B 136 UNP Q38184 EXPRESSION TAG SEQADV 3BVP GLU B 137 UNP Q38184 EXPRESSION TAG SEQADV 3BVP TYR B 138 UNP Q38184 EXPRESSION TAG SEQRES 1 A 138 MET ALA LYS LYS VAL ALA ILE TYR THR ARG VAL SER THR SEQRES 2 A 138 THR ASN GLN ALA GLU GLU GLY PHE SER ILE ASP GLU GLN SEQRES 3 A 138 ILE ASP ARG LEU THR LYS TYR ALA GLU ALA MET GLY TRP SEQRES 4 A 138 GLN VAL SER ASP THR TYR THR ASP ALA GLY PHE SER GLY SEQRES 5 A 138 ALA LYS LEU GLU ARG PRO ALA MET GLN ARG LEU ILE ASN SEQRES 6 A 138 ASP ILE GLU ASN LYS ALA PHE ASP THR VAL LEU VAL TYR SEQRES 7 A 138 LYS LEU ASP ARG LEU SER ARG SER VAL ARG ASP THR LEU SEQRES 8 A 138 TYR LEU VAL LYS ASP VAL PHE THR LYS ASN LYS ILE ASP SEQRES 9 A 138 PHE ILE SER LEU ASN GLU SER ILE ASP THR SER SER ALA SEQRES 10 A 138 MET GLY SER LEU PHE LEU THR ILE LEU SER ALA ILE ASN SEQRES 11 A 138 GLU PHE GLU ARG GLU LEU GLU TYR SEQRES 1 B 138 MET ALA LYS LYS VAL ALA ILE TYR THR ARG VAL SER THR SEQRES 2 B 138 THR ASN GLN ALA GLU GLU GLY PHE SER ILE ASP GLU GLN SEQRES 3 B 138 ILE ASP ARG LEU THR LYS TYR ALA GLU ALA MET GLY TRP SEQRES 4 B 138 GLN VAL SER ASP THR TYR THR ASP ALA GLY PHE SER GLY SEQRES 5 B 138 ALA LYS LEU GLU ARG PRO ALA MET GLN ARG LEU ILE ASN SEQRES 6 B 138 ASP ILE GLU ASN LYS ALA PHE ASP THR VAL LEU VAL TYR SEQRES 7 B 138 LYS LEU ASP ARG LEU SER ARG SER VAL ARG ASP THR LEU SEQRES 8 B 138 TYR LEU VAL LYS ASP VAL PHE THR LYS ASN LYS ILE ASP SEQRES 9 B 138 PHE ILE SER LEU ASN GLU SER ILE ASP THR SER SER ALA SEQRES 10 B 138 MET GLY SER LEU PHE LEU THR ILE LEU SER ALA ILE ASN SEQRES 11 B 138 GLU PHE GLU ARG GLU LEU GLU TYR FORMUL 3 HOH *200(H2 O) HELIX 1 1 ASN A 15 GLU A 19 5 5 HELIX 2 2 SER A 22 MET A 37 1 16 HELIX 3 3 ARG A 57 ASP A 66 1 10 HELIX 4 4 ILE A 67 LYS A 70 5 4 HELIX 5 5 LYS A 79 SER A 84 1 6 HELIX 6 6 SER A 86 VAL A 97 1 12 HELIX 7 7 PHE A 98 LYS A 102 5 5 HELIX 8 8 SER A 116 TYR A 138 1 23 HELIX 9 9 SER B 22 GLY B 38 1 17 HELIX 10 10 ARG B 57 ILE B 67 1 11 HELIX 11 11 GLU B 68 LYS B 70 5 3 HELIX 12 12 LYS B 79 SER B 84 1 6 HELIX 13 13 SER B 86 VAL B 97 1 12 HELIX 14 14 PHE B 98 LYS B 102 5 5 HELIX 15 15 SER B 116 TYR B 138 1 23 SHEET 1 A 5 GLN A 40 ALA A 48 0 SHEET 2 A 5 LYS A 4 VAL A 11 1 N ILE A 7 O TYR A 45 SHEET 3 A 5 THR A 74 VAL A 77 1 O THR A 74 N ALA A 6 SHEET 4 A 5 ASP A 104 SER A 107 1 O ILE A 106 N VAL A 77 SHEET 5 A 5 ILE A 112 ASP A 113 -1 O ILE A 112 N SER A 107 SHEET 1 B 5 GLN B 40 ALA B 48 0 SHEET 2 B 5 LYS B 4 VAL B 11 1 N VAL B 5 O GLN B 40 SHEET 3 B 5 THR B 74 VAL B 77 1 O LEU B 76 N ALA B 6 SHEET 4 B 5 ASP B 104 SER B 107 1 O ASP B 104 N VAL B 75 SHEET 5 B 5 ILE B 112 ASP B 113 -1 O ILE B 112 N SER B 107 CRYST1 67.229 67.229 174.565 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005729 0.00000