data_3BW1 # _entry.id 3BW1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BW1 pdb_00003bw1 10.2210/pdb3bw1/pdb RCSB RCSB046026 ? ? WWPDB D_1000046026 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1I81 . unspecified PDB 1D3B . unspecified PDB 1B34 . unspecified PDB 1N9S . unspecified PDB 1N9R . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BW1 _pdbx_database_status.recvd_initial_deposition_date 2008-01-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Naidoo, N.' 1 'Harrop, S.J.' 2 'Curmi, P.M.G.' 3 'Mabbutt, B.C.' 4 # _citation.id primary _citation.title 'Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 377 _citation.page_first 1357 _citation.page_last 1371 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18329667 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.01.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Naidoo, N.' 1 ? primary 'Harrop, S.J.' 2 ? primary 'Sobti, M.' 3 ? primary 'Haynes, P.A.' 4 ? primary 'Szymczyna, B.R.' 5 ? primary 'Williamson, J.R.' 6 ? primary 'Curmi, P.M.G.' 7 ? primary 'Mabbutt, B.C.' 8 ? # _cell.entry_id 3BW1 _cell.length_a 83.743 _cell.length_b 83.743 _cell.length_c 141.931 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BW1 _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'U6 snRNA-associated Sm-like protein LSm3' 10999.338 2 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 4 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SmX4 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTV TLISTPSEDDDGAVEI ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTV TLISTPSEDDDGAVEI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 GLU n 1 10 THR n 1 11 PRO n 1 12 LEU n 1 13 ASP n 1 14 LEU n 1 15 LEU n 1 16 LYS n 1 17 LEU n 1 18 ASN n 1 19 LEU n 1 20 ASP n 1 21 GLU n 1 22 ARG n 1 23 VAL n 1 24 TYR n 1 25 ILE n 1 26 LYS n 1 27 LEU n 1 28 ARG n 1 29 GLY n 1 30 ALA n 1 31 ARG n 1 32 THR n 1 33 LEU n 1 34 VAL n 1 35 GLY n 1 36 THR n 1 37 LEU n 1 38 GLN n 1 39 ALA n 1 40 PHE n 1 41 ASP n 1 42 SER n 1 43 HIS n 1 44 CYS n 1 45 ASN n 1 46 ILE n 1 47 VAL n 1 48 LEU n 1 49 SER n 1 50 ASP n 1 51 ALA n 1 52 VAL n 1 53 GLU n 1 54 THR n 1 55 ILE n 1 56 TYR n 1 57 GLN n 1 58 LEU n 1 59 ASN n 1 60 ASN n 1 61 GLU n 1 62 GLU n 1 63 LEU n 1 64 SER n 1 65 GLU n 1 66 SER n 1 67 GLU n 1 68 ARG n 1 69 ARG n 1 70 CYS n 1 71 GLU n 1 72 MET n 1 73 VAL n 1 74 PHE n 1 75 ILE n 1 76 ARG n 1 77 GLY n 1 78 ASP n 1 79 THR n 1 80 VAL n 1 81 THR n 1 82 LEU n 1 83 ILE n 1 84 SER n 1 85 THR n 1 86 PRO n 1 87 SER n 1 88 GLU n 1 89 ASP n 1 90 ASP n 1 91 ASP n 1 92 GLY n 1 93 ALA n 1 94 VAL n 1 95 GLU n 1 96 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene SMX4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3 pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETMCSIII _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LSM3_YEAST _struct_ref.pdbx_db_accession P57743 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPS EDDDGAVEI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BW1 A 8 ? 96 ? P57743 1 ? 89 ? 1 89 2 1 3BW1 B 8 ? 96 ? P57743 1 ? 89 ? 1 89 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BW1 MET A 1 ? UNP P57743 ? ? 'expression tag' -7 1 1 3BW1 HIS A 2 ? UNP P57743 ? ? 'expression tag' -6 2 1 3BW1 HIS A 3 ? UNP P57743 ? ? 'expression tag' -5 3 1 3BW1 HIS A 4 ? UNP P57743 ? ? 'expression tag' -4 4 1 3BW1 HIS A 5 ? UNP P57743 ? ? 'expression tag' -3 5 1 3BW1 HIS A 6 ? UNP P57743 ? ? 'expression tag' -2 6 1 3BW1 HIS A 7 ? UNP P57743 ? ? 'expression tag' -1 7 2 3BW1 MET B 1 ? UNP P57743 ? ? 'expression tag' -7 8 2 3BW1 HIS B 2 ? UNP P57743 ? ? 'expression tag' -6 9 2 3BW1 HIS B 3 ? UNP P57743 ? ? 'expression tag' -5 10 2 3BW1 HIS B 4 ? UNP P57743 ? ? 'expression tag' -4 11 2 3BW1 HIS B 5 ? UNP P57743 ? ? 'expression tag' -3 12 2 3BW1 HIS B 6 ? UNP P57743 ? ? 'expression tag' -2 13 2 3BW1 HIS B 7 ? UNP P57743 ? ? 'expression tag' -1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BW1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 56.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1.75M lithium sulfate, 8% (v/v) 2-methyl-2,4-pentanediol, 0.1M imidazole (pH 7.0), 10mM uridine-5-monophosphate, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2005-11-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 3BW1 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.45 _reflns.d_resolution_low 36.25 _reflns.number_all 9583 _reflns.number_obs 9073 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.7 _reflns.B_iso_Wilson_estimate 71.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 2.45 _reflns_shell.d_res_low 2.57 _reflns_shell.percent_possible_all 83.9 _reflns_shell.Rmerge_I_obs 1.405 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs 1169 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 3BW1 _refine.ls_number_reflns_obs 8603 _refine.ls_number_reflns_all 9073 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.04 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.55 _refine.ls_R_factor_obs 0.21694 _refine.ls_R_factor_all 0.21694 _refine.ls_R_factor_R_work 0.21564 _refine.ls_R_factor_R_free 0.24296 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 429 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 74.780 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1I81' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.380 _refine.pdbx_overall_ESU_R_Free 0.251 _refine.overall_SU_ML 0.229 _refine.overall_SU_B 23.823 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1368 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1407 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 24.04 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 1424 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.125 2.003 ? 1931 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.503 5.000 ? 170 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.878 24.179 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.438 15.000 ? 257 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.688 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.129 0.200 ? 235 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1023 'X-RAY DIFFRACTION' ? r_nbd_refined 0.254 0.200 ? 508 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.324 0.200 ? 958 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.127 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.308 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.221 0.200 ? 6 'X-RAY DIFFRACTION' ? r_mcbond_it 0.798 1.500 ? 879 'X-RAY DIFFRACTION' ? r_mcangle_it 1.392 2.000 ? 1400 'X-RAY DIFFRACTION' ? r_scbond_it 2.276 3.000 ? 585 'X-RAY DIFFRACTION' ? r_scangle_it 3.416 4.500 ? 530 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 626 0.07 0.05 'tight positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 A 626 0.13 0.50 'tight thermal' 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.564 _refine_ls_shell.number_reflns_R_work 601 _refine_ls_shell.R_factor_R_work 0.393 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.444 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A MET 8 . A SER 87 . A MET 1 A SER 80 1 ? 1 2 1 B MET 8 . B SER 87 . B MET 1 B SER 80 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3BW1 _struct.title 'Crystal structure of homomeric yeast Lsm3 exhibiting novel octameric ring organisation' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BW1 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RNA-BINDING PROTEIN, SM-LIKE PROTEIN, SM PROTEIN, RING, HOMOMERIC, OCTAMER, mRNA processing, mRNA splicing, Nucleus, Ribonucleoprotein, rRNA processing, tRNA processing, RNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 10 ? LYS A 16 ? THR A 3 LYS A 9 1 ? 7 HELX_P HELX_P2 2 LEU A 17 ? LEU A 19 ? LEU A 10 LEU A 12 5 ? 3 HELX_P HELX_P3 3 THR B 10 ? LEU B 17 ? THR B 3 LEU B 10 1 ? 8 HELX_P HELX_P4 4 ARG B 76 ? ASP B 78 ? ARG B 69 ASP B 71 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 80 ? SER A 84 ? VAL A 73 SER A 77 A 2 ARG A 22 ? LEU A 27 ? ARG A 15 LEU A 20 A 3 THR A 32 ? PHE A 40 ? THR A 25 PHE A 33 A 4 ILE A 46 ? TYR A 56 ? ILE A 39 TYR A 49 A 5 GLU A 65 ? ILE A 75 ? GLU A 58 ILE A 68 A 6 VAL B 80 ? SER B 84 ? VAL B 73 SER B 77 A 7 ARG B 22 ? LEU B 27 ? ARG B 15 LEU B 20 A 8 THR B 32 ? PHE B 40 ? THR B 25 PHE B 33 A 9 ILE B 46 ? TYR B 56 ? ILE B 39 TYR B 49 A 10 GLU B 65 ? ILE B 75 ? GLU B 58 ILE B 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 84 ? O SER A 77 N TYR A 24 ? N TYR A 17 A 2 3 N ILE A 25 ? N ILE A 18 O LEU A 33 ? O LEU A 26 A 3 4 N THR A 36 ? N THR A 29 O SER A 49 ? O SER A 42 A 4 5 N ILE A 46 ? N ILE A 39 O ILE A 75 ? O ILE A 68 A 5 6 N PHE A 74 ? N PHE A 67 O ILE B 83 ? O ILE B 76 A 6 7 O SER B 84 ? O SER B 77 N TYR B 24 ? N TYR B 17 A 7 8 N ILE B 25 ? N ILE B 18 O LEU B 33 ? O LEU B 26 A 8 9 N THR B 36 ? N THR B 29 O SER B 49 ? O SER B 42 A 9 10 N ILE B 46 ? N ILE B 39 O ILE B 75 ? O ILE B 68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MPD 91 ? 4 'BINDING SITE FOR RESIDUE MPD A 91' AC2 Software A MPD 92 ? 3 'BINDING SITE FOR RESIDUE MPD A 92' AC3 Software B MPD 91 ? 2 'BINDING SITE FOR RESIDUE MPD B 91' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ALA A 39 ? ALA A 32 . ? 1_555 ? 2 AC1 4 PHE A 40 ? PHE A 33 . ? 1_555 ? 3 AC1 4 HIS B 7 ? HIS B -1 . ? 1_555 ? 4 AC1 4 GLU B 9 ? GLU B 2 . ? 1_555 ? 5 AC2 3 GLU A 9 ? GLU A 2 . ? 1_555 ? 6 AC2 3 ALA B 39 ? ALA B 32 . ? 3_555 ? 7 AC2 3 PHE B 40 ? PHE B 33 . ? 3_555 ? 8 AC3 2 LEU A 12 ? LEU A 5 . ? 5_555 ? 9 AC3 2 LYS A 16 ? LYS A 9 . ? 5_555 ? # _database_PDB_matrix.entry_id 3BW1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BW1 _atom_sites.fract_transf_matrix[1][1] 0.011941 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011941 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007046 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 HIS 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 -2 HIS HIS A . n A 1 7 HIS 7 -1 -1 HIS HIS A . n A 1 8 MET 8 1 1 MET MET A . n A 1 9 GLU 9 2 2 GLU GLU A . n A 1 10 THR 10 3 3 THR THR A . n A 1 11 PRO 11 4 4 PRO PRO A . n A 1 12 LEU 12 5 5 LEU LEU A . n A 1 13 ASP 13 6 6 ASP ASP A . n A 1 14 LEU 14 7 7 LEU LEU A . n A 1 15 LEU 15 8 8 LEU LEU A . n A 1 16 LYS 16 9 9 LYS LYS A . n A 1 17 LEU 17 10 10 LEU LEU A . n A 1 18 ASN 18 11 11 ASN ASN A . n A 1 19 LEU 19 12 12 LEU LEU A . n A 1 20 ASP 20 13 13 ASP ASP A . n A 1 21 GLU 21 14 14 GLU GLU A . n A 1 22 ARG 22 15 15 ARG ARG A . n A 1 23 VAL 23 16 16 VAL VAL A . n A 1 24 TYR 24 17 17 TYR TYR A . n A 1 25 ILE 25 18 18 ILE ILE A . n A 1 26 LYS 26 19 19 LYS LYS A . n A 1 27 LEU 27 20 20 LEU LEU A . n A 1 28 ARG 28 21 21 ARG ARG A . n A 1 29 GLY 29 22 22 GLY GLY A . n A 1 30 ALA 30 23 23 ALA ALA A . n A 1 31 ARG 31 24 24 ARG ARG A . n A 1 32 THR 32 25 25 THR THR A . n A 1 33 LEU 33 26 26 LEU LEU A . n A 1 34 VAL 34 27 27 VAL VAL A . n A 1 35 GLY 35 28 28 GLY GLY A . n A 1 36 THR 36 29 29 THR THR A . n A 1 37 LEU 37 30 30 LEU LEU A . n A 1 38 GLN 38 31 31 GLN GLN A . n A 1 39 ALA 39 32 32 ALA ALA A . n A 1 40 PHE 40 33 33 PHE PHE A . n A 1 41 ASP 41 34 34 ASP ASP A . n A 1 42 SER 42 35 35 SER SER A . n A 1 43 HIS 43 36 36 HIS HIS A . n A 1 44 CYS 44 37 37 CYS CYS A . n A 1 45 ASN 45 38 38 ASN ASN A . n A 1 46 ILE 46 39 39 ILE ILE A . n A 1 47 VAL 47 40 40 VAL VAL A . n A 1 48 LEU 48 41 41 LEU LEU A . n A 1 49 SER 49 42 42 SER SER A . n A 1 50 ASP 50 43 43 ASP ASP A . n A 1 51 ALA 51 44 44 ALA ALA A . n A 1 52 VAL 52 45 45 VAL VAL A . n A 1 53 GLU 53 46 46 GLU GLU A . n A 1 54 THR 54 47 47 THR THR A . n A 1 55 ILE 55 48 48 ILE ILE A . n A 1 56 TYR 56 49 49 TYR TYR A . n A 1 57 GLN 57 50 50 GLN GLN A . n A 1 58 LEU 58 51 51 LEU LEU A . n A 1 59 ASN 59 52 52 ASN ASN A . n A 1 60 ASN 60 53 53 ASN ASN A . n A 1 61 GLU 61 54 54 GLU GLU A . n A 1 62 GLU 62 55 55 GLU GLU A . n A 1 63 LEU 63 56 56 LEU LEU A . n A 1 64 SER 64 57 57 SER SER A . n A 1 65 GLU 65 58 58 GLU GLU A . n A 1 66 SER 66 59 59 SER SER A . n A 1 67 GLU 67 60 60 GLU GLU A . n A 1 68 ARG 68 61 61 ARG ARG A . n A 1 69 ARG 69 62 62 ARG ARG A . n A 1 70 CYS 70 63 63 CYS CYS A . n A 1 71 GLU 71 64 64 GLU GLU A . n A 1 72 MET 72 65 65 MET MET A . n A 1 73 VAL 73 66 66 VAL VAL A . n A 1 74 PHE 74 67 67 PHE PHE A . n A 1 75 ILE 75 68 68 ILE ILE A . n A 1 76 ARG 76 69 69 ARG ARG A . n A 1 77 GLY 77 70 70 GLY GLY A . n A 1 78 ASP 78 71 71 ASP ASP A . n A 1 79 THR 79 72 72 THR THR A . n A 1 80 VAL 80 73 73 VAL VAL A . n A 1 81 THR 81 74 74 THR THR A . n A 1 82 LEU 82 75 75 LEU LEU A . n A 1 83 ILE 83 76 76 ILE ILE A . n A 1 84 SER 84 77 77 SER SER A . n A 1 85 THR 85 78 78 THR THR A . n A 1 86 PRO 86 79 79 PRO PRO A . n A 1 87 SER 87 80 80 SER SER A . n A 1 88 GLU 88 81 ? ? ? A . n A 1 89 ASP 89 82 ? ? ? A . n A 1 90 ASP 90 83 ? ? ? A . n A 1 91 ASP 91 84 ? ? ? A . n A 1 92 GLY 92 85 ? ? ? A . n A 1 93 ALA 93 86 86 ALA ALA A . n A 1 94 VAL 94 87 87 VAL VAL A . n A 1 95 GLU 95 88 88 GLU GLU A . n A 1 96 ILE 96 89 89 ILE ILE A . n B 1 1 MET 1 -7 ? ? ? B . n B 1 2 HIS 2 -6 ? ? ? B . n B 1 3 HIS 3 -5 ? ? ? B . n B 1 4 HIS 4 -4 ? ? ? B . n B 1 5 HIS 5 -3 ? ? ? B . n B 1 6 HIS 6 -2 -2 HIS HIS B . n B 1 7 HIS 7 -1 -1 HIS HIS B . n B 1 8 MET 8 1 1 MET MET B . n B 1 9 GLU 9 2 2 GLU GLU B . n B 1 10 THR 10 3 3 THR THR B . n B 1 11 PRO 11 4 4 PRO PRO B . n B 1 12 LEU 12 5 5 LEU LEU B . n B 1 13 ASP 13 6 6 ASP ASP B . n B 1 14 LEU 14 7 7 LEU LEU B . n B 1 15 LEU 15 8 8 LEU LEU B . n B 1 16 LYS 16 9 9 LYS LYS B . n B 1 17 LEU 17 10 10 LEU LEU B . n B 1 18 ASN 18 11 11 ASN ASN B . n B 1 19 LEU 19 12 12 LEU LEU B . n B 1 20 ASP 20 13 13 ASP ASP B . n B 1 21 GLU 21 14 14 GLU GLU B . n B 1 22 ARG 22 15 15 ARG ARG B . n B 1 23 VAL 23 16 16 VAL VAL B . n B 1 24 TYR 24 17 17 TYR TYR B . n B 1 25 ILE 25 18 18 ILE ILE B . n B 1 26 LYS 26 19 19 LYS LYS B . n B 1 27 LEU 27 20 20 LEU LEU B . n B 1 28 ARG 28 21 21 ARG ARG B . n B 1 29 GLY 29 22 22 GLY GLY B . n B 1 30 ALA 30 23 23 ALA ALA B . n B 1 31 ARG 31 24 24 ARG ARG B . n B 1 32 THR 32 25 25 THR THR B . n B 1 33 LEU 33 26 26 LEU LEU B . n B 1 34 VAL 34 27 27 VAL VAL B . n B 1 35 GLY 35 28 28 GLY GLY B . n B 1 36 THR 36 29 29 THR THR B . n B 1 37 LEU 37 30 30 LEU LEU B . n B 1 38 GLN 38 31 31 GLN GLN B . n B 1 39 ALA 39 32 32 ALA ALA B . n B 1 40 PHE 40 33 33 PHE PHE B . n B 1 41 ASP 41 34 34 ASP ASP B . n B 1 42 SER 42 35 35 SER SER B . n B 1 43 HIS 43 36 36 HIS HIS B . n B 1 44 CYS 44 37 37 CYS CYS B . n B 1 45 ASN 45 38 38 ASN ASN B . n B 1 46 ILE 46 39 39 ILE ILE B . n B 1 47 VAL 47 40 40 VAL VAL B . n B 1 48 LEU 48 41 41 LEU LEU B . n B 1 49 SER 49 42 42 SER SER B . n B 1 50 ASP 50 43 43 ASP ASP B . n B 1 51 ALA 51 44 44 ALA ALA B . n B 1 52 VAL 52 45 45 VAL VAL B . n B 1 53 GLU 53 46 46 GLU GLU B . n B 1 54 THR 54 47 47 THR THR B . n B 1 55 ILE 55 48 48 ILE ILE B . n B 1 56 TYR 56 49 49 TYR TYR B . n B 1 57 GLN 57 50 50 GLN GLN B . n B 1 58 LEU 58 51 51 LEU LEU B . n B 1 59 ASN 59 52 52 ASN ASN B . n B 1 60 ASN 60 53 53 ASN ASN B . n B 1 61 GLU 61 54 54 GLU GLU B . n B 1 62 GLU 62 55 55 GLU GLU B . n B 1 63 LEU 63 56 56 LEU LEU B . n B 1 64 SER 64 57 57 SER SER B . n B 1 65 GLU 65 58 58 GLU GLU B . n B 1 66 SER 66 59 59 SER SER B . n B 1 67 GLU 67 60 60 GLU GLU B . n B 1 68 ARG 68 61 61 ARG ARG B . n B 1 69 ARG 69 62 62 ARG ARG B . n B 1 70 CYS 70 63 63 CYS CYS B . n B 1 71 GLU 71 64 64 GLU GLU B . n B 1 72 MET 72 65 65 MET MET B . n B 1 73 VAL 73 66 66 VAL VAL B . n B 1 74 PHE 74 67 67 PHE PHE B . n B 1 75 ILE 75 68 68 ILE ILE B . n B 1 76 ARG 76 69 69 ARG ARG B . n B 1 77 GLY 77 70 70 GLY GLY B . n B 1 78 ASP 78 71 71 ASP ASP B . n B 1 79 THR 79 72 72 THR THR B . n B 1 80 VAL 80 73 73 VAL VAL B . n B 1 81 THR 81 74 74 THR THR B . n B 1 82 LEU 82 75 75 LEU LEU B . n B 1 83 ILE 83 76 76 ILE ILE B . n B 1 84 SER 84 77 77 SER SER B . n B 1 85 THR 85 78 78 THR THR B . n B 1 86 PRO 86 79 79 PRO PRO B . n B 1 87 SER 87 80 80 SER SER B . n B 1 88 GLU 88 81 ? ? ? B . n B 1 89 ASP 89 82 ? ? ? B . n B 1 90 ASP 90 83 ? ? ? B . n B 1 91 ASP 91 84 ? ? ? B . n B 1 92 GLY 92 85 ? ? ? B . n B 1 93 ALA 93 86 86 ALA ALA B . n B 1 94 VAL 94 87 87 VAL VAL B . n B 1 95 GLU 95 88 88 GLU GLU B . n B 1 96 ILE 96 89 89 ILE ILE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD 1 90 1 MPD MPD A . D 2 MPD 1 91 2 MPD MPD A . E 2 MPD 1 92 3 MPD MPD A . F 3 SO4 1 90 5 SO4 SO4 B . G 2 MPD 1 91 4 MPD MPD B . H 4 HOH 1 93 6 HOH HOH A . I 4 HOH 1 92 7 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 21230 ? 1 MORE -296.2 ? 1 'SSA (A^2)' 38540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-12-25 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' reflns_shell 2 3 'Structure model' struct_ref_seq_dif 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_ncs_dom_lim 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_reflns_shell.Rmerge_I_obs' 2 3 'Structure model' '_reflns_shell.number_unique_all' 3 3 'Structure model' '_reflns_shell.number_unique_obs' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 8 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 0.5992 23.2524 19.8099 0.0965 -0.2593 -0.0551 -0.0244 0.0730 -0.1970 12.4283 2.2544 7.2372 0.0207 5.1127 -0.4405 0.3462 -0.8800 0.2747 0.6813 0.0188 -0.0542 -0.0326 -0.1213 -0.3650 'X-RAY DIFFRACTION' 2 ? refined 17.0043 16.0755 19.8517 -0.0952 -0.0972 -0.0607 -0.1776 -0.0934 -0.1629 6.8008 7.5471 9.8014 -4.1128 2.1944 -2.8226 0.0506 -0.8121 0.0591 0.9635 0.3494 -0.3299 -0.0889 0.0165 -0.4000 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 8 A 80 A 87 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 B 8 B 80 B 87 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345dtb 'data collection' . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 PHASER phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A -1 ? ? -52.72 171.24 2 1 ASN A 53 ? ? 51.43 -131.29 3 1 ARG B 21 ? ? -36.27 136.75 4 1 ASN B 53 ? ? 49.36 -131.65 5 1 LEU B 56 ? ? -67.38 75.19 6 1 SER B 57 ? ? -74.89 -168.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A HIS -6 ? A HIS 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A GLU 81 ? A GLU 88 7 1 Y 1 A ASP 82 ? A ASP 89 8 1 Y 1 A ASP 83 ? A ASP 90 9 1 Y 1 A ASP 84 ? A ASP 91 10 1 Y 1 A GLY 85 ? A GLY 92 11 1 Y 1 B MET -7 ? B MET 1 12 1 Y 1 B HIS -6 ? B HIS 2 13 1 Y 1 B HIS -5 ? B HIS 3 14 1 Y 1 B HIS -4 ? B HIS 4 15 1 Y 1 B HIS -3 ? B HIS 5 16 1 Y 1 B GLU 81 ? B GLU 88 17 1 Y 1 B ASP 82 ? B ASP 89 18 1 Y 1 B ASP 83 ? B ASP 90 19 1 Y 1 B ASP 84 ? B ASP 91 20 1 Y 1 B GLY 85 ? B GLY 92 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MPD C1 C N N 250 MPD C2 C N N 251 MPD O2 O N N 252 MPD CM C N N 253 MPD C3 C N N 254 MPD C4 C N S 255 MPD O4 O N N 256 MPD C5 C N N 257 MPD H11 H N N 258 MPD H12 H N N 259 MPD H13 H N N 260 MPD HO2 H N N 261 MPD HM1 H N N 262 MPD HM2 H N N 263 MPD HM3 H N N 264 MPD H31 H N N 265 MPD H32 H N N 266 MPD H4 H N N 267 MPD HO4 H N N 268 MPD H51 H N N 269 MPD H52 H N N 270 MPD H53 H N N 271 PHE N N N N 272 PHE CA C N S 273 PHE C C N N 274 PHE O O N N 275 PHE CB C N N 276 PHE CG C Y N 277 PHE CD1 C Y N 278 PHE CD2 C Y N 279 PHE CE1 C Y N 280 PHE CE2 C Y N 281 PHE CZ C Y N 282 PHE OXT O N N 283 PHE H H N N 284 PHE H2 H N N 285 PHE HA H N N 286 PHE HB2 H N N 287 PHE HB3 H N N 288 PHE HD1 H N N 289 PHE HD2 H N N 290 PHE HE1 H N N 291 PHE HE2 H N N 292 PHE HZ H N N 293 PHE HXT H N N 294 PRO N N N N 295 PRO CA C N S 296 PRO C C N N 297 PRO O O N N 298 PRO CB C N N 299 PRO CG C N N 300 PRO CD C N N 301 PRO OXT O N N 302 PRO H H N N 303 PRO HA H N N 304 PRO HB2 H N N 305 PRO HB3 H N N 306 PRO HG2 H N N 307 PRO HG3 H N N 308 PRO HD2 H N N 309 PRO HD3 H N N 310 PRO HXT H N N 311 SER N N N N 312 SER CA C N S 313 SER C C N N 314 SER O O N N 315 SER CB C N N 316 SER OG O N N 317 SER OXT O N N 318 SER H H N N 319 SER H2 H N N 320 SER HA H N N 321 SER HB2 H N N 322 SER HB3 H N N 323 SER HG H N N 324 SER HXT H N N 325 SO4 S S N N 326 SO4 O1 O N N 327 SO4 O2 O N N 328 SO4 O3 O N N 329 SO4 O4 O N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MPD C1 C2 sing N N 237 MPD C1 H11 sing N N 238 MPD C1 H12 sing N N 239 MPD C1 H13 sing N N 240 MPD C2 O2 sing N N 241 MPD C2 CM sing N N 242 MPD C2 C3 sing N N 243 MPD O2 HO2 sing N N 244 MPD CM HM1 sing N N 245 MPD CM HM2 sing N N 246 MPD CM HM3 sing N N 247 MPD C3 C4 sing N N 248 MPD C3 H31 sing N N 249 MPD C3 H32 sing N N 250 MPD C4 O4 sing N N 251 MPD C4 C5 sing N N 252 MPD C4 H4 sing N N 253 MPD O4 HO4 sing N N 254 MPD C5 H51 sing N N 255 MPD C5 H52 sing N N 256 MPD C5 H53 sing N N 257 PHE N CA sing N N 258 PHE N H sing N N 259 PHE N H2 sing N N 260 PHE CA C sing N N 261 PHE CA CB sing N N 262 PHE CA HA sing N N 263 PHE C O doub N N 264 PHE C OXT sing N N 265 PHE CB CG sing N N 266 PHE CB HB2 sing N N 267 PHE CB HB3 sing N N 268 PHE CG CD1 doub Y N 269 PHE CG CD2 sing Y N 270 PHE CD1 CE1 sing Y N 271 PHE CD1 HD1 sing N N 272 PHE CD2 CE2 doub Y N 273 PHE CD2 HD2 sing N N 274 PHE CE1 CZ doub Y N 275 PHE CE1 HE1 sing N N 276 PHE CE2 CZ sing Y N 277 PHE CE2 HE2 sing N N 278 PHE CZ HZ sing N N 279 PHE OXT HXT sing N N 280 PRO N CA sing N N 281 PRO N CD sing N N 282 PRO N H sing N N 283 PRO CA C sing N N 284 PRO CA CB sing N N 285 PRO CA HA sing N N 286 PRO C O doub N N 287 PRO C OXT sing N N 288 PRO CB CG sing N N 289 PRO CB HB2 sing N N 290 PRO CB HB3 sing N N 291 PRO CG CD sing N N 292 PRO CG HG2 sing N N 293 PRO CG HG3 sing N N 294 PRO CD HD2 sing N N 295 PRO CD HD3 sing N N 296 PRO OXT HXT sing N N 297 SER N CA sing N N 298 SER N H sing N N 299 SER N H2 sing N N 300 SER CA C sing N N 301 SER CA CB sing N N 302 SER CA HA sing N N 303 SER C O doub N N 304 SER C OXT sing N N 305 SER CB OG sing N N 306 SER CB HB2 sing N N 307 SER CB HB3 sing N N 308 SER OG HG sing N N 309 SER OXT HXT sing N N 310 SO4 S O1 doub N N 311 SO4 S O2 doub N N 312 SO4 S O3 sing N N 313 SO4 S O4 sing N N 314 THR N CA sing N N 315 THR N H sing N N 316 THR N H2 sing N N 317 THR CA C sing N N 318 THR CA CB sing N N 319 THR CA HA sing N N 320 THR C O doub N N 321 THR C OXT sing N N 322 THR CB OG1 sing N N 323 THR CB CG2 sing N N 324 THR CB HB sing N N 325 THR OG1 HG1 sing N N 326 THR CG2 HG21 sing N N 327 THR CG2 HG22 sing N N 328 THR CG2 HG23 sing N N 329 THR OXT HXT sing N N 330 TYR N CA sing N N 331 TYR N H sing N N 332 TYR N H2 sing N N 333 TYR CA C sing N N 334 TYR CA CB sing N N 335 TYR CA HA sing N N 336 TYR C O doub N N 337 TYR C OXT sing N N 338 TYR CB CG sing N N 339 TYR CB HB2 sing N N 340 TYR CB HB3 sing N N 341 TYR CG CD1 doub Y N 342 TYR CG CD2 sing Y N 343 TYR CD1 CE1 sing Y N 344 TYR CD1 HD1 sing N N 345 TYR CD2 CE2 doub Y N 346 TYR CD2 HD2 sing N N 347 TYR CE1 CZ doub Y N 348 TYR CE1 HE1 sing N N 349 TYR CE2 CZ sing Y N 350 TYR CE2 HE2 sing N N 351 TYR CZ OH sing N N 352 TYR OH HH sing N N 353 TYR OXT HXT sing N N 354 VAL N CA sing N N 355 VAL N H sing N N 356 VAL N H2 sing N N 357 VAL CA C sing N N 358 VAL CA CB sing N N 359 VAL CA HA sing N N 360 VAL C O doub N N 361 VAL C OXT sing N N 362 VAL CB CG1 sing N N 363 VAL CB CG2 sing N N 364 VAL CB HB sing N N 365 VAL CG1 HG11 sing N N 366 VAL CG1 HG12 sing N N 367 VAL CG1 HG13 sing N N 368 VAL CG2 HG21 sing N N 369 VAL CG2 HG22 sing N N 370 VAL CG2 HG23 sing N N 371 VAL OXT HXT sing N N 372 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1I81 _pdbx_initial_refinement_model.details 'PDB ENTRY 1I81' #