HEADER METAL BINDING PROTEIN 10-JAN-08 3BWW TITLE CRYSTAL STRUCTURE OF A DUF692 FAMILY PROTEIN (HS_1138) FROM TITLE 2 HAEMOPHILUS SOMNUS 129PT AT 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION DUF692/COG3220; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 62-367; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS SOMNUS; SOURCE 3 ORGANISM_TAXID: 205914; SOURCE 4 STRAIN: 129PT; SOURCE 5 GENE: YP_719350.1, HS_1138; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BWW 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BWW 1 REMARK LINK REVDAT 5 25-OCT-17 3BWW 1 REMARK REVDAT 4 13-JUL-11 3BWW 1 VERSN REVDAT 3 23-MAR-11 3BWW 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BWW 1 VERSN REVDAT 1 22-JAN-08 3BWW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (DUF692/COG3220) (YP_719350.1) FROM HAEMOPHILUS SOMNUS 129PT JRNL TITL 3 AT 2.20 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 17291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 883 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.4520 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.5910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : 1.72000 REMARK 3 B33 (A**2) : -2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2092 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1379 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2843 ; 1.707 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3371 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 6.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;39.285 ;24.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;15.662 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2344 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 416 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1394 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 987 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1089 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.278 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.323 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 0.818 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 520 ; 0.147 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2086 ; 1.450 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 863 ; 2.143 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 757 ; 3.109 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6318 40.6090 15.4131 REMARK 3 T TENSOR REMARK 3 T11: -0.1547 T22: -0.1910 REMARK 3 T33: -0.1752 T12: 0.0492 REMARK 3 T13: 0.0167 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.9469 L22: 1.2623 REMARK 3 L33: 4.2166 L12: 0.2990 REMARK 3 L13: 0.2255 L23: -0.5140 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: -0.1299 S13: -0.1110 REMARK 3 S21: 0.1259 S22: 0.0217 S23: 0.0099 REMARK 3 S31: 0.1640 S32: 0.0284 S33: -0.0838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. THE PRESENCE OF IRON AND ARSENIC WERE CONFIRMED BY X-RAY REMARK 3 FLUORESCENCE. THE METAL IDENTITY AT THE INDIVIDUAL FE AND REMARK 3 CACODYLATE ION SITES WAS BASED ON ANOMALOUS DIFFERENCE FOURIER REMARK 3 MAP COMPARISONS WITH DATA COLLECTED ABOVE AND BELOW THE FOLLOWING REMARK 3 K ABSORPTION EDGES: FE, ZN, AS AND SE. REMARK 4 REMARK 4 3BWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.33 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 0.97939, 0.97953 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.689 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 7.5% PEG 8000, 34.0% 2 REMARK 280 -METHYL-2,4-PENTANEDIOL, 0.1M SODIUM CACODYLATE PH 6.33, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.78600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.79250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.99600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.79250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.78600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.99600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 98 REMARK 465 GLU A 99 REMARK 465 CYS A 100 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 HIS A 103 REMARK 465 LEU A 104 REMARK 465 TYR A 105 REMARK 465 ASP A 106 REMARK 465 GLY A 206 REMARK 465 HIS A 207 REMARK 465 ASP A 208 REMARK 465 ASP A 209 REMARK 465 GLU A 210 REMARK 465 HIS A 211 REMARK 465 ALA A 212 REMARK 465 ALA A 213 REMARK 465 THR A 214 REMARK 465 GLU A 215 REMARK 465 VAL A 216 REMARK 465 GLN A 217 REMARK 465 ILE A 218 REMARK 465 GLN A 219 REMARK 465 THR A 220 REMARK 465 SER A 221 REMARK 465 GLU A 222 REMARK 465 SER A 223 REMARK 465 PHE A 224 REMARK 465 ASN A 225 REMARK 465 LYS A 226 REMARK 465 ILE A 227 REMARK 465 LYS A 228 REMARK 465 GLY A 229 REMARK 465 ASP A 230 REMARK 465 LEU A 231 REMARK 465 ARG A 232 REMARK 465 HIS A 233 REMARK 465 LEU A 234 REMARK 465 PRO A 235 REMARK 465 PRO A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 VAL A 239 REMARK 465 ASP A 240 REMARK 465 THR A 241 REMARK 465 HIS A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 VAL A 246 REMARK 465 LYS A 247 REMARK 465 ASP A 272 REMARK 465 PHE A 273 REMARK 465 ASN A 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 21 NE CZ NH1 NH2 REMARK 470 LYS A 38 CE NZ REMARK 470 SER A 64 OG REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 74 CD OE1 OE2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 PHE A 97 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 107 CB CG CD1 CD2 REMARK 470 LEU A 108 CB CG CD1 CD2 REMARK 470 TYR A 143 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 GLU A 147 CD OE1 OE2 REMARK 470 LYS A 197 CE NZ REMARK 470 THR A 249 OG1 CG2 REMARK 470 PHE A 275 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 283 NZ REMARK 470 GLU A 284 CD OE1 OE2 REMARK 470 LYS A 297 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE A 307 O HOH A 334 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 276 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 141.77 -37.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 307 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HIS A 94 NE2 97.1 REMARK 620 3 GLU A 138 OE1 87.1 80.3 REMARK 620 4 CAC A 309 O1 173.3 78.7 97.2 REMARK 620 5 HOH A 323 O 90.8 89.6 169.3 84.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE2 REMARK 620 2 ASP A 171 OD2 95.5 REMARK 620 3 HIS A 203 ND1 96.5 106.5 REMARK 620 4 GLU A 270 OE1 171.9 78.1 80.9 REMARK 620 5 CAC A 309 O2 91.5 76.6 171.1 91.8 REMARK 620 6 HOH A 334 O 84.5 162.6 90.8 103.1 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374865 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BWW A 1 306 UNP Q0I408 Q0I408_HAES1 62 367 SEQADV 3BWW GLY A 0 UNP Q0I408 EXPRESSION TAG SEQRES 1 A 307 GLY MSE ARG GLN GLY ALA GLY LEU GLY TYR ARG ARG ASP SEQRES 2 A 307 LEU ALA GLU GLY PHE LEU GLN LEU ARG ASN ASN ASP ARG SEQRES 3 A 307 ILE GLN PHE MSE GLU ILE ALA PRO GLU ASN TRP ILE LYS SEQRES 4 A 307 MSE GLY GLY PHE ALA ARG TYR GLN PHE ASP LYS VAL ALA SEQRES 5 A 307 GLU LYS ILE PRO ILE LEU ILE HIS GLY LEU SER LEU SER SEQRES 6 A 307 LEU GLY GLY GLN ALA PRO LEU ASP LYS GLU LEU LEU SER SEQRES 7 A 307 SER ILE LYS ALA MSE ILE LYS GLN TYR ASN THR PRO PHE SEQRES 8 A 307 PHE SER ASP HIS LEU SER PHE CYS GLU CYS ASP GLY HIS SEQRES 9 A 307 LEU TYR ASP LEU LEU PRO MSE PRO PHE THR ASP GLU ALA SEQRES 10 A 307 VAL LYS HIS THR ALA ALA ARG ILE ARG GLU VAL GLN ASP SEQRES 11 A 307 PHE LEU GLU ILE GLN ILE SER VAL GLU ASN THR SER TYR SEQRES 12 A 307 TYR LEU HIS SER GLU THR SER THR MSE ASN GLU VAL GLU SEQRES 13 A 307 PHE LEU ASN ALA ILE VAL GLN GLU ALA ASN CYS GLY ILE SEQRES 14 A 307 HIS LEU ASP VAL ASN ASN ILE TYR VAL ASN ALA VAL ASN SEQRES 15 A 307 HIS GLY LEU LEU ASP PRO HIS VAL PHE ILE ASP ASN VAL SEQRES 16 A 307 ASP LEU LYS ARG VAL ASN TYR ILE HIS ILE ALA GLY HIS SEQRES 17 A 307 ASP ASP GLU HIS ALA ALA THR GLU VAL GLN ILE GLN THR SEQRES 18 A 307 SER GLU SER PHE ASN LYS ILE LYS GLY ASP LEU ARG HIS SEQRES 19 A 307 LEU PRO PRO LEU LEU VAL ASP THR HIS GLY GLU ASN VAL SEQRES 20 A 307 LYS GLY THR VAL TRP ASP LEU LEU GLU TYR THR TYR ALA SEQRES 21 A 307 ARG LEU SER HIS MSE PRO PRO THR LEU LEU GLU ARG ASP SEQRES 22 A 307 PHE ASN PHE PRO PRO PHE GLU LYS LEU CYS LYS GLU VAL SEQRES 23 A 307 ASP ILE ILE HIS GLN LEU GLN GLN LYS TYR VAL LYS LYS SEQRES 24 A 307 ARG GLY LEU SER TRP LEU LYS ILE MODRES 3BWW MSE A 1 MET SELENOMETHIONINE MODRES 3BWW MSE A 29 MET SELENOMETHIONINE MODRES 3BWW MSE A 39 MET SELENOMETHIONINE MODRES 3BWW MSE A 82 MET SELENOMETHIONINE MODRES 3BWW MSE A 110 MET SELENOMETHIONINE MODRES 3BWW MSE A 151 MET SELENOMETHIONINE MODRES 3BWW MSE A 264 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 29 16 HET MSE A 39 8 HET MSE A 82 8 HET MSE A 110 16 HET MSE A 151 8 HET MSE A 264 8 HET FE A 307 1 HET FE A 308 1 HET CAC A 309 5 HET EDO A 310 4 HET EDO A 311 4 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION HETNAM CAC CACODYLATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CAC DIMETHYLARSINATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 FE 2(FE 3+) FORMUL 4 CAC C2 H6 AS O2 1- FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *123(H2 O) HELIX 1 1 ARG A 10 ASP A 12 5 3 HELIX 2 2 LEU A 13 LEU A 20 1 8 HELIX 3 3 ALA A 32 LYS A 38 1 7 HELIX 4 4 GLY A 40 ALA A 51 1 12 HELIX 5 5 ASP A 72 TYR A 86 1 15 HELIX 6 6 THR A 113 GLU A 132 1 20 HELIX 7 7 ASN A 152 ASN A 165 1 14 HELIX 8 8 VAL A 172 GLY A 183 1 12 HELIX 9 9 ASP A 186 VAL A 194 1 9 HELIX 10 10 ASP A 195 LYS A 197 5 3 HELIX 11 11 GLY A 248 ALA A 259 1 12 HELIX 12 12 PRO A 277 GLY A 300 1 24 SHEET 1 A 8 ILE A 56 ILE A 58 0 SHEET 2 A 8 MSE A 29 ILE A 31 1 N MSE A 29 O LEU A 57 SHEET 3 A 8 ALA A 5 GLY A 8 1 N LEU A 7 O GLU A 30 SHEET 4 A 8 THR A 267 LEU A 269 1 O LEU A 269 N GLY A 6 SHEET 5 A 8 VAL A 199 ILE A 204 1 N ILE A 202 O LEU A 268 SHEET 6 A 8 GLY A 167 ASP A 171 1 N LEU A 170 O TYR A 201 SHEET 7 A 8 SER A 136 GLU A 138 1 N VAL A 137 O HIS A 169 SHEET 8 A 8 SER A 92 ASP A 93 1 N ASP A 93 O GLU A 138 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C PHE A 28 N AMSE A 29 1555 1555 1.32 LINK C PHE A 28 N BMSE A 29 1555 1555 1.33 LINK C AMSE A 29 N GLU A 30 1555 1555 1.33 LINK C BMSE A 29 N GLU A 30 1555 1555 1.33 LINK C LYS A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N GLY A 40 1555 1555 1.33 LINK C ALA A 81 N MSE A 82 1555 1555 1.34 LINK C MSE A 82 N ILE A 83 1555 1555 1.33 LINK C PRO A 109 N AMSE A 110 1555 1555 1.33 LINK C PRO A 109 N BMSE A 110 1555 1555 1.34 LINK C AMSE A 110 N PRO A 111 1555 1555 1.35 LINK C BMSE A 110 N PRO A 111 1555 1555 1.35 LINK C THR A 150 N MSE A 151 1555 1555 1.32 LINK C MSE A 151 N ASN A 152 1555 1555 1.33 LINK C HIS A 263 N MSE A 264 1555 1555 1.34 LINK C MSE A 264 N PRO A 265 1555 1555 1.36 LINK NE2 HIS A 59 FE FE A 307 1555 1555 2.24 LINK NE2 HIS A 94 FE FE A 307 1555 1555 2.00 LINK OE1 GLU A 138 FE FE A 307 1555 1555 2.12 LINK OE2 GLU A 138 FE FE A 308 1555 1555 2.05 LINK OD2 ASP A 171 FE FE A 308 1555 1555 2.20 LINK ND1 HIS A 203 FE FE A 308 1555 1555 2.30 LINK OE1 GLU A 270 FE FE A 308 1555 1555 2.38 LINK FE FE A 307 O1 CAC A 309 1555 1555 2.33 LINK FE FE A 307 O HOH A 323 1555 1555 2.44 LINK FE FE A 308 O2 CAC A 309 1555 1555 2.06 LINK FE FE A 308 O HOH A 334 1555 1555 2.41 CISPEP 1 GLY A 0 MSE A 1 0 17.79 SITE 1 AC1 7 HIS A 59 HIS A 94 GLU A 138 FE A 308 SITE 2 AC1 7 CAC A 309 HOH A 323 HOH A 334 SITE 1 AC2 7 GLU A 138 ASP A 171 HIS A 203 GLU A 270 SITE 2 AC2 7 FE A 307 CAC A 309 HOH A 334 SITE 1 AC3 9 HIS A 94 GLU A 138 ASP A 171 ASN A 174 SITE 2 AC3 9 GLU A 270 FE A 307 FE A 308 HOH A 334 SITE 3 AC3 9 HOH A 370 SITE 1 AC4 2 THR A 140 GLU A 153 SITE 1 AC5 3 LYS A 298 HOH A 383 HOH A 422 CRYST1 53.572 65.992 95.585 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010462 0.00000