HEADER HYDROLASE 10-JAN-08 3BWX TITLE CRYSTAL STRUCTURE OF AN ALPHA/BETA HYDROLASE (YP_496220.1) FROM TITLE 2 NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM 12444; SOURCE 5 GENE: YP_496220.1, SARO_0941; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_496220.1, AN ALPHA/BETA HYDROLASE, ALPHA/BETA HYDROLASE FOLD, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BWX 1 SEQADV REVDAT 6 20-OCT-21 3BWX 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3BWX 1 REMARK LINK REVDAT 4 25-OCT-17 3BWX 1 REMARK REVDAT 3 13-JUL-11 3BWX 1 VERSN REVDAT 2 24-FEB-09 3BWX 1 VERSN REVDAT 1 22-JAN-08 3BWX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ALPHA/BETA HYDROLASE (YP_496220.1) JRNL TITL 2 FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.50 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 41469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 11.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2303 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1617 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3110 ; 1.671 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3893 ; 1.041 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 5.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;35.231 ;22.449 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;12.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.191 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2572 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 478 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 484 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1859 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1119 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1173 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 244 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.091 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.020 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 2.061 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 580 ; 0.526 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2300 ; 2.605 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 947 ; 4.065 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 810 ; 5.445 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0076 36.5432 13.1223 REMARK 3 T TENSOR REMARK 3 T11: -0.0244 T22: -0.0166 REMARK 3 T33: -0.0189 T12: 0.0009 REMARK 3 T13: -0.0031 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.2816 L22: 0.4219 REMARK 3 L33: 0.3725 L12: -0.1384 REMARK 3 L13: 0.0239 L23: -0.0571 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0151 S13: -0.0262 REMARK 3 S21: -0.0119 S22: 0.0036 S23: 0.0211 REMARK 3 S31: 0.0050 S32: -0.0327 S33: -0.0092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO REMARK 3 ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. CA IONS AND CL IONS WERE MODELED BASED ON CRYSTALLIZATION REMARK 3 CONDITION, ETHYLENE GLYCOL (EDO) MOLECULES WERE MODELED REMARK 3 BASED ON CRYO CONDITION. REMARK 4 REMARK 4 3BWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41517 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.714 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M CACL2, 20.0% PEG 3350, REMARK 280 NO BUFFER PH 5.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 LYS A 72 CE NZ REMARK 470 GLU A 96 OE1 OE2 REMARK 470 LEU A 108 CD1 CD2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 147 CD OE1 NE2 REMARK 470 SER A 189 OG REMARK 470 SER A 190 OG REMARK 470 GLN A 214 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 104 -121.77 58.25 REMARK 500 SER A 104 -120.09 54.84 REMARK 500 ASN A 117 92.85 -178.09 REMARK 500 PHE A 205 -121.40 47.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 285 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 204 O REMARK 620 2 ALA A 207 O 67.7 REMARK 620 3 HOH A 349 O 91.7 99.6 REMARK 620 4 HOH A 352 O 80.4 90.9 163.4 REMARK 620 5 HOH A 357 O 151.6 139.8 78.2 101.9 REMARK 620 6 HOH A 363 O 78.8 146.5 80.2 83.9 73.4 REMARK 620 7 HOH A 424 O 136.4 70.1 105.4 90.2 72.0 142.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 286 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 446 O REMARK 620 2 HOH A 505 O 87.3 REMARK 620 3 HOH A 525 O 92.1 94.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 387108 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 2. THE CONSTRUCT WAS ENGINEERED WITH THE FOLLOWING REMARK 999 MUTATION: A209V. DBREF 3BWX A 1 284 UNP Q2G9T7 Q2G9T7_NOVAD 1 284 SEQADV 3BWX GLY A 0 UNP Q2G9T7 EXPRESSION TAG SEQADV 3BWX VAL A 209 UNP Q2G9T7 ALA 209 ENGINEERED MUTATION SEQRES 1 A 285 GLY MSE ALA GLU TYR GLU ASP ARG TYR TRP THR SER SER SEQRES 2 A 285 ASP GLY LEU ARG LEU HIS PHE ARG ALA TYR GLU GLY ASP SEQRES 3 A 285 ILE SER ARG PRO PRO VAL LEU CYS LEU PRO GLY LEU THR SEQRES 4 A 285 ARG ASN ALA ARG ASP PHE GLU ASP LEU ALA THR ARG LEU SEQRES 5 A 285 ALA GLY ASP TRP ARG VAL LEU CYS PRO GLU MSE ARG GLY SEQRES 6 A 285 ARG GLY ASP SER ASP TYR ALA LYS ASP PRO MSE THR TYR SEQRES 7 A 285 GLN PRO MSE GLN TYR LEU GLN ASP LEU GLU ALA LEU LEU SEQRES 8 A 285 ALA GLN GLU GLY ILE GLU ARG PHE VAL ALA ILE GLY THR SEQRES 9 A 285 SER LEU GLY GLY LEU LEU THR MSE LEU LEU ALA ALA ALA SEQRES 10 A 285 ASN PRO ALA ARG ILE ALA ALA ALA VAL LEU ASN ASP VAL SEQRES 11 A 285 GLY PRO GLU VAL SER PRO GLU GLY LEU GLU ARG ILE ARG SEQRES 12 A 285 GLY TYR VAL GLY GLN GLY ARG ASN PHE GLU THR TRP MSE SEQRES 13 A 285 HIS ALA ALA ARG ALA LEU GLN GLU SER SER GLY ASP VAL SEQRES 14 A 285 TYR PRO ASP TRP ASP ILE THR GLN TRP LEU ARG TYR ALA SEQRES 15 A 285 LYS ARG ILE MSE VAL LEU GLY SER SER GLY ARG ILE ALA SEQRES 16 A 285 PHE ASP TYR ASP MSE LYS ILE ALA GLU PRO PHE GLU ALA SEQRES 17 A 285 PRO VAL GLY ALA THR PRO GLN VAL ASP MSE TRP PRO LEU SEQRES 18 A 285 PHE ASP ALA LEU ALA THR ARG PRO LEU LEU VAL LEU ARG SEQRES 19 A 285 GLY GLU THR SER ASP ILE LEU SER ALA GLN THR ALA ALA SEQRES 20 A 285 LYS MSE ALA SER ARG PRO GLY VAL GLU LEU VAL THR LEU SEQRES 21 A 285 PRO ARG ILE GLY HIS ALA PRO THR LEU ASP GLU PRO GLU SEQRES 22 A 285 SER ILE ALA ALA ILE GLY ARG LEU LEU GLU ARG VAL MODRES 3BWX MSE A 1 MET SELENOMETHIONINE MODRES 3BWX MSE A 62 MET SELENOMETHIONINE MODRES 3BWX MSE A 75 MET SELENOMETHIONINE MODRES 3BWX MSE A 80 MET SELENOMETHIONINE MODRES 3BWX MSE A 111 MET SELENOMETHIONINE MODRES 3BWX MSE A 155 MET SELENOMETHIONINE MODRES 3BWX MSE A 185 MET SELENOMETHIONINE MODRES 3BWX MSE A 199 MET SELENOMETHIONINE MODRES 3BWX MSE A 217 MET SELENOMETHIONINE MODRES 3BWX MSE A 248 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 62 8 HET MSE A 75 8 HET MSE A 80 8 HET MSE A 111 8 HET MSE A 155 8 HET MSE A 185 8 HET MSE A 199 16 HET MSE A 217 8 HET MSE A 248 8 HET CA A 285 1 HET CA A 286 1 HET CL A 287 1 HET CL A 288 1 HET EDO A 289 4 HET EDO A 290 4 HET EDO A 291 4 HET EDO A 292 4 HET EDO A 293 4 HET EDO A 294 4 HET EDO A 295 4 HET EDO A 296 4 HET EDO A 297 4 HET EDO A 298 4 HET EDO A 299 4 HET EDO A 300 4 HET EDO A 301 4 HET EDO A 302 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 EDO 14(C2 H6 O2) FORMUL 20 HOH *336(H2 O) HELIX 1 1 ASN A 40 ASP A 43 5 4 HELIX 2 2 PHE A 44 ALA A 52 1 9 HELIX 3 3 ASP A 73 TYR A 77 5 5 HELIX 4 4 GLN A 78 GLY A 94 1 17 HELIX 5 5 SER A 104 ASN A 117 1 14 HELIX 6 6 SER A 134 VAL A 145 1 12 HELIX 7 7 THR A 153 GLY A 166 1 14 HELIX 8 8 ASP A 173 ILE A 184 1 12 HELIX 9 9 ASP A 198 GLU A 203 5 6 HELIX 10 10 MSE A 217 ALA A 225 1 9 HELIX 11 11 SER A 241 SER A 250 1 10 HELIX 12 12 GLU A 270 GLU A 282 1 13 SHEET 1 A 8 GLU A 5 THR A 10 0 SHEET 2 A 8 ARG A 16 TYR A 22 -1 O PHE A 19 N ARG A 7 SHEET 3 A 8 VAL A 57 PRO A 60 -1 O VAL A 57 N TYR A 22 SHEET 4 A 8 VAL A 31 LEU A 34 1 N VAL A 31 O LEU A 58 SHEET 5 A 8 PHE A 98 THR A 103 1 O VAL A 99 N LEU A 32 SHEET 6 A 8 ILE A 121 ASN A 127 1 O ASN A 127 N GLY A 102 SHEET 7 A 8 LEU A 229 GLY A 234 1 O LEU A 232 N LEU A 126 SHEET 8 A 8 VAL A 254 LEU A 259 1 O GLU A 255 N VAL A 231 SHEET 1 B 3 ASN A 150 PHE A 151 0 SHEET 2 B 3 ILE A 193 PHE A 195 -1 O ILE A 193 N PHE A 151 SHEET 3 B 3 MSE A 185 LEU A 187 -1 N VAL A 186 O ALA A 194 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C GLU A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N ARG A 63 1555 1555 1.33 LINK C PRO A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N THR A 76 1555 1555 1.33 LINK C PRO A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLN A 81 1555 1555 1.33 LINK C THR A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N LEU A 112 1555 1555 1.34 LINK C TRP A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N HIS A 156 1555 1555 1.33 LINK C ILE A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N VAL A 186 1555 1555 1.32 LINK C ASP A 198 N AMSE A 199 1555 1555 1.33 LINK C ASP A 198 N BMSE A 199 1555 1555 1.33 LINK C AMSE A 199 N LYS A 200 1555 1555 1.34 LINK C BMSE A 199 N LYS A 200 1555 1555 1.33 LINK C ASP A 216 N MSE A 217 1555 1555 1.34 LINK C MSE A 217 N TRP A 218 1555 1555 1.32 LINK C LYS A 247 N MSE A 248 1555 1555 1.34 LINK C MSE A 248 N ALA A 249 1555 1555 1.34 LINK O PRO A 204 CA CA A 285 1555 1555 2.47 LINK O ALA A 207 CA CA A 285 1555 1555 2.39 LINK CA CA A 285 O HOH A 349 1555 1555 2.33 LINK CA CA A 285 O HOH A 352 1555 1555 2.39 LINK CA CA A 285 O HOH A 357 1555 1555 2.63 LINK CA CA A 285 O HOH A 363 1555 1555 2.44 LINK CA CA A 285 O HOH A 424 1555 1555 2.43 LINK CA CA A 286 O HOH A 446 1555 1555 2.47 LINK CA CA A 286 O HOH A 505 1555 1555 2.36 LINK CA CA A 286 O HOH A 525 1555 1555 2.26 CISPEP 1 HIS A 264 ALA A 265 0 -5.47 SITE 1 AC1 7 PRO A 204 ALA A 207 HOH A 349 HOH A 352 SITE 2 AC1 7 HOH A 357 HOH A 363 HOH A 424 SITE 1 AC2 7 ASP A 67 GLU A 282 HOH A 410 HOH A 446 SITE 2 AC2 7 HOH A 476 HOH A 505 HOH A 525 SITE 1 AC3 3 GLY A 210 HOH A 310 HOH A 398 SITE 1 AC4 3 PHE A 151 GLU A 152 HIS A 156 SITE 1 AC5 7 GLN A 176 THR A 267 ASP A 269 GLU A 270 SITE 2 AC5 7 EDO A 291 HOH A 318 HOH A 490 SITE 1 AC6 3 ASP A 46 ARG A 50 ASP A 269 SITE 1 AC7 5 GLN A 176 ARG A 179 ARG A 183 ASP A 269 SITE 2 AC7 5 EDO A 289 SITE 1 AC8 6 TYR A 8 THR A 10 MSE A 75 PRO A 271 SITE 2 AC8 6 HOH A 322 HOH A 487 SITE 1 AC9 8 ALA A 2 TYR A 4 ASP A 6 GLU A 255 SITE 2 AC9 8 LEU A 256 VAL A 257 ARG A 279 HOH A 335 SITE 1 BC1 3 TRP A 218 ARG A 251 EDO A 297 SITE 1 BC2 4 GLU A 96 ASN A 117 ALA A 119 EDO A 296 SITE 1 BC3 6 ILE A 95 GLU A 96 ARG A 120 EDO A 295 SITE 2 BC3 6 HOH A 443 HOH A 611 SITE 1 BC4 6 TRP A 154 ASP A 216 TRP A 218 EDO A 294 SITE 2 BC4 6 HOH A 401 HOH A 614 SITE 1 BC5 4 ARG A 149 ALA A 160 SER A 164 HOH A 473 SITE 1 BC6 5 ASP A 13 LEU A 15 LYS A 72 ASP A 73 SITE 2 BC6 5 HOH A 609 SITE 1 BC7 8 PRO A 35 GLY A 36 LEU A 37 MSE A 62 SITE 2 BC7 8 ARG A 65 LEU A 105 GLY A 106 HOH A 586 SITE 1 BC8 6 HIS A 18 ASN A 40 ARG A 42 GLU A 61 SITE 2 BC8 6 GLY A 66 ASP A 67 SITE 1 BC9 7 PRO A 118 MSE A 155 HIS A 156 HOH A 329 SITE 2 BC9 7 HOH A 483 HOH A 529 HOH A 618 CRYST1 44.480 69.950 82.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012162 0.00000