HEADER FLUORESCENT PROTEIN 12-JAN-08 3BXA TITLE MONOMERIC FAR-RED FLUORESCENT PROTEIN MKATE CRYSTALLIZED AT PH 4.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAR-RED FLUORESCENT PROTEIN MKATE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTACMAEA QUADRICOLOR; SOURCE 3 ORGANISM_TAXID: 6118; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS FAR-RED FLUORESCENT PROTEIN, E. QUADRICOLOR, CHROMOPHORE STRUCTURE, KEYWDS 2 PH-INDUCED CIS-TRANS IZOMERIZATION, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.PLETNEV,N.PLETNEVA,V.PLETNEV REVDAT 5 25-OCT-17 3BXA 1 REMARK REVDAT 4 13-JUL-11 3BXA 1 VERSN REVDAT 3 24-FEB-09 3BXA 1 VERSN REVDAT 2 11-NOV-08 3BXA 1 JRNL REVDAT 1 22-JUL-08 3BXA 0 JRNL AUTH S.PLETNEV,D.SHCHERBO,D.M.CHUDAKOV,N.PLETNEVA,E.M.MERZLYAK, JRNL AUTH 2 A.WLODAWER,Z.DAUTER,V.PLETNEV JRNL TITL A CRYSTALLOGRAPHIC STUDY OF BRIGHT FAR-RED FLUORESCENT JRNL TITL 2 PROTEIN MKATE REVEALS PH-INDUCED CIS-TRANS ISOMERIZATION OF JRNL TITL 3 THE CHROMOPHORE. JRNL REF J.BIOL.CHEM. V. 283 28980 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18682399 JRNL DOI 10.1074/JBC.M800599200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 48843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3818 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5178 ; 1.766 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 6.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;33.134 ;24.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 659 ;13.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2950 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1901 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2559 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2352 ; 1.013 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3713 ; 1.597 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1696 ; 2.431 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1465 ; 3.540 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% W/V PEG 3350, 0.07M CITRIC ACID, REMARK 280 PH 4.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.09050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.09050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.22600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.09050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.09050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.22600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 49.09050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 49.09050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.22600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 49.09050 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 49.09050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.22600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 229 REMARK 465 HIS A 230 REMARK 465 LYS A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 229 REMARK 465 HIS B 230 REMARK 465 LYS B 231 REMARK 465 LEU B 232 REMARK 465 ASN B 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 144 O5 CIT B 234 1.74 REMARK 500 OH NRQ B 63 O HOH B 268 1.94 REMARK 500 CE1 NRQ B 63 NH2 ARG B 197 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 69 55.39 -97.18 REMARK 500 ASN B 21 -1.00 73.47 REMARK 500 PHE B 69 51.37 -104.14 REMARK 500 GLN B 74 16.40 58.70 REMARK 500 ASP B 151 44.21 33.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UIS RELATED DB: PDB REMARK 900 RED FLUORESCENT PROTEIN EQFP611 REMARK 900 RELATED ID: 3BX9 RELATED DB: PDB REMARK 900 MONOMERIC FAR-RED FLUORESCENT PROTEIN MKATE CRYSTALLIZED AT PH 2.0 REMARK 900 RELATED ID: 3BXB RELATED DB: PDB REMARK 900 MONOMERIC FAR-RED FLUORESCENT PROTEIN MKATE CRYSTALLIZED AT PH 7.0 REMARK 900 RELATED ID: 3BXC RELATED DB: PDB REMARK 900 MONOMERIC FAR-RED FLUORESCENT PROTEIN MKATE CRYSTALLIZED AT PH 9.0 DBREF 3BXA A -11 233 PDB 3BXA 3BXA 1 245 DBREF 3BXA B -11 233 PDB 3BXA 3BXA 1 245 SEQRES 1 A 243 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 243 SER GLU LEU ILE THR GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 A 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 A 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 A 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 A 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER LYS THR SEQRES 7 A 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE PHE LYS SEQRES 8 A 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 A 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 A 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 A 243 ILE ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 A 243 GLN LYS LYS THR LEU GLY TRP GLU ALA SER THR GLU MET SEQRES 13 A 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG SER ASP SEQRES 14 A 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 A 243 ASN LEU LYS THR THR TYR ARG SER LYS LYS PRO ALA LYS SEQRES 16 A 243 ASN LEU LYS MET PRO GLY VAL TYR TYR VAL ASP ARG ARG SEQRES 17 A 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 A 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 A 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 B 243 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 243 SER GLU LEU ILE THR GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 B 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 B 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 B 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 B 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER LYS THR SEQRES 7 B 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE PHE LYS SEQRES 8 B 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 B 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 B 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 B 243 ILE ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 B 243 GLN LYS LYS THR LEU GLY TRP GLU ALA SER THR GLU MET SEQRES 13 B 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG SER ASP SEQRES 14 B 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 B 243 ASN LEU LYS THR THR TYR ARG SER LYS LYS PRO ALA LYS SEQRES 16 B 243 ASN LEU LYS MET PRO GLY VAL TYR TYR VAL ASP ARG ARG SEQRES 17 B 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 B 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 B 243 PRO SER LYS LEU GLY HIS LYS LEU ASN MODRES 3BXA NRQ A 63 MET MODRES 3BXA NRQ A 63 TYR MODRES 3BXA NRQ A 63 GLY MODRES 3BXA NRQ B 63 MET MODRES 3BXA NRQ B 63 TYR MODRES 3BXA NRQ B 63 GLY HET NRQ A 63 46 HET NRQ B 63 46 HET CIT B 234 13 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM CIT CITRIC ACID HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ 2(C16 H17 N3 O4 S) FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *302(H2 O) HELIX 1 1 ALA A 54 PHE A 62 5 9 HELIX 2 2 ASP A 78 SER A 83 1 6 HELIX 3 3 PRO A 183 LEU A 187 5 5 HELIX 4 4 ALA B 54 PHE B 62 5 9 HELIX 5 5 SER B 66 ILE B 70 5 5 HELIX 6 6 PHE B 80 PHE B 84 5 5 HELIX 7 7 PRO B 183 LEU B 187 5 5 SHEET 1 A11 ASN A 71 HIS A 72 0 SHEET 2 A11 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N ILE A 43 O VAL A 211 SHEET 4 A11 HIS A 22 LYS A 33 -1 N GLU A 29 O ARG A 42 SHEET 5 A11 MET A 9 VAL A 19 -1 N MET A 15 O CYS A 26 SHEET 6 A11 CYS A 114 VAL A 124 1 O TYR A 117 N LYS A 12 SHEET 7 A11 VAL A 101 GLN A 111 -1 N THR A 103 O ARG A 122 SHEET 8 A11 PHE A 88 TYR A 96 -1 N THR A 94 O LEU A 102 SHEET 9 A11 HIS A 169 SER A 180 -1 O ASN A 173 N THR A 95 SHEET 10 A11 GLY A 153 LEU A 164 -1 N SER A 158 O LEU A 174 SHEET 11 A11 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 B 6 ASN A 71 HIS A 72 0 SHEET 2 B 6 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 B 6 TYR A 193 ALA A 205 -1 N GLU A 200 O HIS A 214 SHEET 4 B 6 SER A 143 ALA A 150 -1 N LEU A 147 O TYR A 193 SHEET 5 B 6 GLY A 153 LEU A 164 -1 O GLU A 155 N TYR A 148 SHEET 6 B 6 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 C11 ASN B 71 HIS B 72 0 SHEET 2 C11 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 C11 THR B 38 GLU B 47 -1 N ILE B 43 O VAL B 211 SHEET 4 C11 HIS B 22 LYS B 33 -1 N THR B 27 O LYS B 44 SHEET 5 C11 MET B 9 VAL B 19 -1 N MET B 15 O CYS B 26 SHEET 6 C11 CYS B 114 VAL B 124 1 O GLY B 123 N THR B 18 SHEET 7 C11 VAL B 101 GLN B 111 -1 N SER B 109 O ILE B 116 SHEET 8 C11 PHE B 88 TYR B 96 -1 N ARG B 92 O ALA B 104 SHEET 9 C11 HIS B 169 SER B 180 -1 O THR B 177 N GLU B 91 SHEET 10 C11 GLY B 153 LEU B 164 -1 N LEU B 154 O TYR B 178 SHEET 11 C11 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 D 6 ASN B 71 HIS B 72 0 SHEET 2 D 6 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 D 6 TYR B 193 ALA B 205 -1 N GLU B 200 O HIS B 214 SHEET 4 D 6 SER B 143 ALA B 150 -1 N LEU B 147 O TYR B 193 SHEET 5 D 6 GLY B 153 LEU B 164 -1 O ARG B 157 N MET B 146 SHEET 6 D 6 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 LINK C PHE A 62 N1 ANRQ A 63 1555 1555 1.29 LINK C PHE A 62 N1 BNRQ A 63 1555 1555 1.38 LINK C3 ANRQ A 63 N SER A 66 1555 1555 1.32 LINK C3 BNRQ A 63 N SER A 66 1555 1555 1.37 LINK C PHE B 62 N1 ANRQ B 63 1555 1555 1.29 LINK C PHE B 62 N1 BNRQ B 63 1555 1555 1.35 LINK C3 ANRQ B 63 N SER B 66 1555 1555 1.33 LINK C3 BNRQ B 63 N SER B 66 1555 1555 1.33 CISPEP 1 GLY A 49 PRO A 50 0 -3.50 CISPEP 2 PHE A 84 PRO A 85 0 7.72 CISPEP 3 GLY B 49 PRO B 50 0 -15.49 CISPEP 4 PHE B 84 PRO B 85 0 12.92 SITE 1 AC1 13 THR A 144 ARG A 157 SER A 158 ASP A 159 SITE 2 AC1 13 TYR A 194 SER B 143 THR B 144 MET B 146 SITE 3 AC1 13 ARG B 157 SER B 158 ASP B 159 HOH B 274 SITE 4 AC1 13 HOH B 314 CRYST1 98.181 98.181 106.452 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009394 0.00000