HEADER OXIDOREDUCTASE 13-JAN-08 3BXD TITLE CRYSTAL STRUCTURE OF MOUSE MYO-INOSITOL OXYGENASE (RE-REFINED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MUS MUSCULUS MYO-INOSITOL OXYGENASE; COMPND 5 SYNONYM: MYO-INOSITOL OXYGENASE, ALDEHYDE REDUCTASE-LIKE 6, RENAL- COMPND 6 SPECIFIC OXIDOREDUCTASE; COMPND 7 EC: 1.13.99.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MIOX, ALDRL6, RSOR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PRP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPRO EX HTB KEYWDS PROTEIN-SUBSTRATE COMPLEX, HD DOMAIN FOLD, DIIRON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.M.HALLBERG REVDAT 7 30-AUG-23 3BXD 1 REMARK LINK REVDAT 6 25-OCT-17 3BXD 1 REMARK REVDAT 5 12-OCT-11 3BXD 1 VERSN REMARK REVDAT 4 19-MAY-09 3BXD 1 REMARK REVDAT 3 24-FEB-09 3BXD 1 VERSN REVDAT 2 10-JUN-08 3BXD 1 JRNL REVDAT 1 05-FEB-08 3BXD 0 JRNL AUTH A.G.THORSELL,C.PERSSON,N.VOEVODSKAYA,R.D.BUSAM, JRNL AUTH 2 M.HAMMARSTROM,S.GRASLUND,A.GRASLUND,B.M.HALLBERG JRNL TITL STRUCTURAL AND BIOPHYSICAL CHARACTERIZATION OF HUMAN JRNL TITL 2 MYO-INOSITOL OXYGENASE. JRNL REF J.BIOL.CHEM. V. 283 15209 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18364358 JRNL DOI 10.1074/JBC.M800348200 REMARK 0 REMARK 0 THIS ENTRY 3BXD REFLECTS AN ALTERNATIVE REMARK 0 MODELING OF THE STRUCTURAL DATA IN R2HUOSF. REMARK 0 IN PDB ENTRY 3BXD INFORMATION IN REMARK 200 REMARK 0 SERIES IS BASED ON THE EXPERIMENT DESCRIBED REMARK 0 IN PDB ENTRY 2HUO. REMARK 0 ORIGINAL DATA DETERMINED BY AUTHOR J.WANG REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2HUO REMARK 0 AUTH P.M.BROWN,T.T.CARADOC-DAVIES,J.M.DICKSON,G.J.COOPER, REMARK 0 AUTH 2 K.M.LOOMES,E.N.BAKER REMARK 0 TITL CRYSTAL STRUCTURE OF A SUBSTRATE COMPLEX OF MYO-INOSITOL REMARK 0 TITL 2 OXYGENASE, A DI-IRON OXYGENASE WITH A KEY ROLE IN INOSITOL REMARK 0 TITL 3 METABOLISM. REMARK 0 REF PROC.NATL.ACAD.SCI.USA V. 103 15032 2006 REMARK 0 REFN ISSN 0027-8424 REMARK 0 PMID 17012379 REMARK 0 DOI 10.1073/PNAS.0605143103 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7100 - 3.9990 1.00 2594 132 0.1720 0.2040 REMARK 3 2 3.9990 - 3.1740 1.00 2460 135 0.1640 0.2150 REMARK 3 3 3.1740 - 2.7730 1.00 2451 129 0.2200 0.3010 REMARK 3 4 2.7730 - 2.5200 1.00 2405 137 0.2210 0.2780 REMARK 3 5 2.5200 - 2.3390 1.00 2407 136 0.2420 0.2860 REMARK 3 6 2.3390 - 2.2010 1.00 2442 104 0.2550 0.3270 REMARK 3 7 2.2010 - 2.0910 1.00 2370 145 0.2800 0.3100 REMARK 3 8 2.0910 - 2.0000 1.00 2388 139 0.3040 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.48000 REMARK 3 B22 (A**2) : -9.75500 REMARK 3 B33 (A**2) : -19.71600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4171 REMARK 3 ANGLE : 0.756 7479 REMARK 3 CHIRALITY : 0.053 306 REMARK 3 PLANARITY : 0.003 648 REMARK 3 DIHEDRAL : 15.521 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 37.5633 20.6708 42.7932 REMARK 3 T TENSOR REMARK 3 T11: 1.4811 T22: 0.4015 REMARK 3 T33: 0.4929 T12: 0.3087 REMARK 3 T13: -0.2956 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 1.9341 L22: 0.6338 REMARK 3 L33: 2.8263 L12: -0.5678 REMARK 3 L13: -0.8542 L23: 2.4062 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.0536 S13: 0.2138 REMARK 3 S21: -0.5165 S22: 0.0076 S23: 0.0143 REMARK 3 S31: -0.3121 S32: -0.0435 S33: -0.0563 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 35.5648 5.6497 30.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.3795 REMARK 3 T33: -0.1546 T12: 0.0514 REMARK 3 T13: -0.3038 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 0.0745 L22: 6.7662 REMARK 3 L33: -1.5410 L12: -0.7218 REMARK 3 L13: -0.8284 L23: -2.9011 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.7116 S13: -0.2045 REMARK 3 S21: 1.9873 S22: 0.2326 S23: -0.3426 REMARK 3 S31: -0.2461 S32: -0.0430 S33: -0.0039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 18.8599 14.7705 24.1976 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.2525 REMARK 3 T33: 1.1914 T12: -0.0258 REMARK 3 T13: 0.1335 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.3258 L22: 3.5000 REMARK 3 L33: -0.1729 L12: -0.6708 REMARK 3 L13: -0.0933 L23: -0.8126 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0640 S13: -0.2905 REMARK 3 S21: 0.5673 S22: 0.0470 S23: 1.5146 REMARK 3 S31: -0.0685 S32: -0.0181 S33: -0.0206 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 28.4533 22.3896 38.9091 REMARK 3 T TENSOR REMARK 3 T11: 1.3806 T22: 0.4452 REMARK 3 T33: 0.5501 T12: 0.3712 REMARK 3 T13: 0.1577 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.7923 L22: 3.4056 REMARK 3 L33: 1.6585 L12: -1.4007 REMARK 3 L13: -0.5305 L23: 1.4963 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.0031 S13: 0.1368 REMARK 3 S21: 0.5735 S22: 0.2085 S23: -0.2129 REMARK 3 S31: 0.0166 S32: 0.0419 S33: -0.2767 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 25.7507 33.5338 27.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.2712 REMARK 3 T33: 0.6424 T12: 0.0662 REMARK 3 T13: 0.0319 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 4.5202 L22: 2.3417 REMARK 3 L33: 0.5845 L12: -1.9410 REMARK 3 L13: -1.2093 L23: 2.3867 REMARK 3 S TENSOR REMARK 3 S11: -0.3918 S12: -0.1886 S13: 0.8183 REMARK 3 S21: 0.6043 S22: 0.4733 S23: -0.1211 REMARK 3 S31: 0.3743 S32: 0.1190 S33: -0.0819 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 28.8286 19.1271 25.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.3290 T22: 0.2019 REMARK 3 T33: 0.5721 T12: 0.0120 REMARK 3 T13: 0.0660 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.9460 L22: 2.7412 REMARK 3 L33: 0.5012 L12: -0.4684 REMARK 3 L13: 0.0729 L23: -0.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.2121 S12: 0.0273 S13: 0.1376 REMARK 3 S21: 0.7339 S22: 0.1294 S23: 0.1613 REMARK 3 S31: -0.1845 S32: 0.0204 S33: 0.0714 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 45.8455 8.8638 34.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.6003 T22: 0.3080 REMARK 3 T33: 0.7147 T12: 0.0689 REMARK 3 T13: -0.3112 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.8992 L22: 1.0058 REMARK 3 L33: 1.2725 L12: 0.5315 REMARK 3 L13: -1.2215 L23: 0.9796 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: -0.0517 S13: -0.3244 REMARK 3 S21: 0.9082 S22: -0.1273 S23: -0.7566 REMARK 3 S31: -0.1518 S32: 0.0299 S33: 0.2407 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 48.9674 1.3305 25.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.3223 REMARK 3 T33: 1.0210 T12: 0.0412 REMARK 3 T13: -0.0471 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.3394 L22: 3.9532 REMARK 3 L33: 1.5491 L12: 0.1624 REMARK 3 L13: 1.3557 L23: -0.8759 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: 0.3500 S13: 0.4533 REMARK 3 S21: 0.2133 S22: 0.0042 S23: -0.9057 REMARK 3 S31: -0.0096 S32: 0.3820 S33: 0.0482 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 36.1120 17.1613 18.8929 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.2397 REMARK 3 T33: 0.6056 T12: -0.0350 REMARK 3 T13: -0.0185 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.1929 L22: 2.2349 REMARK 3 L33: 0.5771 L12: -0.9431 REMARK 3 L13: 0.6355 L23: -0.6027 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: 0.2781 S13: 0.2152 REMARK 3 S21: 0.0043 S22: -0.0750 S23: -0.2383 REMARK 3 S31: -0.1057 S32: 0.1789 S33: 0.1498 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 44.1934 23.2255 15.8296 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.3394 REMARK 3 T33: 0.8314 T12: -0.0445 REMARK 3 T13: 0.0272 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.4896 L22: 3.9247 REMARK 3 L33: 3.5127 L12: 3.3086 REMARK 3 L13: -2.7205 L23: 1.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.3614 S13: 0.5975 REMARK 3 S21: -0.2487 S22: 0.0754 S23: -0.7254 REMARK 3 S31: -0.3572 S32: 0.5355 S33: -0.1574 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 30.5232 32.1702 31.2022 REMARK 3 T TENSOR REMARK 3 T11: 0.5594 T22: 0.2804 REMARK 3 T33: 0.6273 T12: 0.0608 REMARK 3 T13: -0.0609 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.6660 L22: 4.8651 REMARK 3 L33: 0.4966 L12: -0.6576 REMARK 3 L13: -0.0818 L23: 0.8292 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.0580 S13: -0.0949 REMARK 3 S21: 1.2231 S22: 0.3702 S23: -0.7148 REMARK 3 S31: 0.1202 S32: 0.0440 S33: -0.1973 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 16.6250 28.3683 19.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.2829 REMARK 3 T33: 1.1724 T12: 0.0096 REMARK 3 T13: -0.0759 T23: 0.0698 REMARK 3 L TENSOR REMARK 3 L11: -0.3265 L22: 3.3463 REMARK 3 L33: 0.2890 L12: -0.5369 REMARK 3 L13: -0.2845 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: 0.0515 S13: -0.5853 REMARK 3 S21: -0.1264 S22: 0.1333 S23: 1.7682 REMARK 3 S31: 0.0225 S32: -0.1440 S33: -0.0614 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS ENTRY REFLECTS AN ALTERNATIVE REMARK 3 MODELING OF X-RAY DATA R2HUOSF REMARK 4 REMARK 4 3BXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: FOURIER SYNTHESIS FROM 2HUO REMARK 200 STARTING MODEL: 2HUO REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2HUO REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 TYR A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 ASP A 16 REMARK 465 VAL A 17 REMARK 465 ASP A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 306 O HOH A 391 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 50 -4.05 -143.02 REMARK 500 ASP A 92 44.93 -145.19 REMARK 500 VAL A 139 -49.29 -136.63 REMARK 500 PHE A 156 30.43 70.61 REMARK 500 SER A 208 43.80 -101.13 REMARK 500 CYS A 279 61.73 -163.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HIS A 123 NE2 86.2 REMARK 620 3 ASP A 124 OD2 86.4 85.5 REMARK 620 4 ASP A 253 OD1 88.9 90.3 173.9 REMARK 620 5 OH A 304 O 160.3 106.2 109.3 76.1 REMARK 620 6 HOH A 310 O 80.8 164.4 85.0 98.1 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 HIS A 194 NE2 90.7 REMARK 620 3 HIS A 220 NE2 98.9 85.6 REMARK 620 4 INS A 303 O1 97.3 95.1 163.8 REMARK 620 5 INS A 303 O6 175.8 93.2 79.8 83.9 REMARK 620 6 OH A 304 O 101.9 167.3 90.5 85.3 74.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE INS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HUO RELATED DB: PDB REMARK 900 THIS WAS THE STARTING MODEL FOR A RE-REFINEMENT MOSTLY INVOLVING REMARK 900 THE FIRST N-TERMINAL RESIDUES BUT ALSO INVOLVING A REBUILD OF THE REMARK 900 WATER MODEL AND CHANGE OF ROTAMERS TO BETTER CORRESPOND TO THEIR REMARK 900 MOST PROBABLE CONFORMATION (PROTEINS. 2000 AUG 15;40(3):389-408. REMARK 900 THE PENULTIMATE ROTAMER LIBRARY. LOVELL SC, WORD JM, RICHARDSON JS, REMARK 900 RICHARDSON DC.) EXPERIMENTAL DATA FROM 2HUO, BUT ANISOTROPICALLY REMARK 900 CORRECTED ACCORDING TO M. STRONG, M.R. SAWAYA, S. WANG, M. PHILLIPS, REMARK 900 D. CASCIO, D. EISENBERG, PROC.NATL.ACAD.SCI.USA. 103, 8060-65, REMARK 900 2006. DBREF 3BXD A 1 285 UNP Q9QXN5 MIOX_MOUSE 1 285 SEQRES 1 A 289 GLY ALA MET GLY MET LYS VAL ASP VAL GLY PRO ASP PRO SEQRES 2 A 289 SER LEU VAL TYR ARG PRO ASP VAL ASP PRO GLU MET ALA SEQRES 3 A 289 LYS SER LYS ASP SER PHE ARG ASN TYR THR SER GLY PRO SEQRES 4 A 289 LEU LEU ASP ARG VAL PHE THR THR TYR LYS LEU MET HIS SEQRES 5 A 289 THR HIS GLN THR VAL ASP PHE VAL SER ARG LYS ARG ILE SEQRES 6 A 289 GLN TYR GLY SER PHE SER TYR LYS LYS MET THR ILE MET SEQRES 7 A 289 GLU ALA VAL GLY MET LEU ASP ASP LEU VAL ASP GLU SER SEQRES 8 A 289 ASP PRO ASP VAL ASP PHE PRO ASN SER PHE HIS ALA PHE SEQRES 9 A 289 GLN THR ALA GLU GLY ILE ARG LYS ALA HIS PRO ASP LYS SEQRES 10 A 289 ASP TRP PHE HIS LEU VAL GLY LEU LEU HIS ASP LEU GLY SEQRES 11 A 289 LYS ILE MET ALA LEU TRP GLY GLU PRO GLN TRP ALA VAL SEQRES 12 A 289 VAL GLY ASP THR PHE PRO VAL GLY CYS ARG PRO GLN ALA SEQRES 13 A 289 SER VAL VAL PHE CYS ASP SER THR PHE GLN ASP ASN PRO SEQRES 14 A 289 ASP LEU GLN ASP PRO ARG TYR SER THR GLU LEU GLY MET SEQRES 15 A 289 TYR GLN PRO HIS CYS GLY LEU GLU ASN VAL LEU MET SER SEQRES 16 A 289 TRP GLY HIS ASP GLU TYR LEU TYR GLN MET MET LYS PHE SEQRES 17 A 289 ASN LYS PHE SER LEU PRO SER GLU ALA PHE TYR MET ILE SEQRES 18 A 289 ARG PHE HIS SER PHE TYR PRO TRP HIS THR GLY GLY ASP SEQRES 19 A 289 TYR ARG GLN LEU CYS SER GLN GLN ASP LEU ASP MET LEU SEQRES 20 A 289 PRO TRP VAL GLN GLU PHE ASN LYS PHE ASP LEU TYR THR SEQRES 21 A 289 LYS CYS PRO ASP LEU PRO ASP VAL GLU SER LEU ARG PRO SEQRES 22 A 289 TYR TYR GLN GLY LEU ILE ASP LYS TYR CYS PRO GLY THR SEQRES 23 A 289 LEU SER TRP HET FE A 301 1 HET FE A 302 1 HET OH A 304 1 HET INS A 303 12 HET FMT A 305 4 HETNAM FE FE (III) ION HETNAM OH HYDROXIDE ION HETNAM INS 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE HETNAM FMT FORMIC ACID HETSYN INS MYO-INOSITOL FORMUL 2 FE 2(FE 3+) FORMUL 4 OH H O 1- FORMUL 5 INS C6 H12 O6 FORMUL 6 FMT C H2 O2 FORMUL 7 HOH *104(H2 O) HELIX 1 1 LEU A 36 THR A 49 1 14 HELIX 2 2 THR A 52 GLY A 64 1 13 HELIX 3 3 THR A 72 LEU A 80 1 9 HELIX 4 4 ASP A 81 LEU A 83 5 3 HELIX 5 5 PRO A 94 HIS A 110 1 17 HELIX 6 6 LYS A 113 HIS A 123 1 11 HELIX 7 7 ASP A 124 GLY A 133 5 10 HELIX 8 8 PRO A 135 VAL A 139 5 5 HELIX 9 9 PHE A 156 THR A 160 5 5 HELIX 10 10 ASN A 164 ASP A 169 5 6 HELIX 11 11 GLY A 184 VAL A 188 5 5 HELIX 12 12 GLY A 193 LYS A 206 1 14 HELIX 13 13 PRO A 210 HIS A 220 1 11 HELIX 14 14 PHE A 222 THR A 227 1 6 HELIX 15 15 SER A 236 THR A 256 1 21 HELIX 16 16 ASP A 263 CYS A 279 1 17 SHEET 1 A 2 LYS A 70 MET A 71 0 SHEET 2 A 2 LEU A 283 SER A 284 -1 O LEU A 283 N MET A 71 LINK NE2 HIS A 98 FE FE A 301 1555 1555 2.35 LINK NE2 HIS A 123 FE FE A 301 1555 1555 2.13 LINK OD2 ASP A 124 FE FE A 301 1555 1555 2.26 LINK OD1 ASP A 124 FE FE A 302 1555 1555 2.17 LINK NE2 HIS A 194 FE FE A 302 1555 1555 2.40 LINK NE2 HIS A 220 FE FE A 302 1555 1555 2.13 LINK OD1 ASP A 253 FE FE A 301 1555 1555 2.38 LINK FE FE A 301 O OH A 304 1555 1555 2.19 LINK FE FE A 301 O HOH A 310 1555 1555 2.27 LINK FE FE A 302 O1 INS A 303 1555 1555 2.05 LINK FE FE A 302 O6 INS A 303 1555 1555 2.22 LINK FE FE A 302 O OH A 304 1555 1555 2.37 SITE 1 AC1 8 HIS A 98 HIS A 123 ASP A 124 ASP A 253 SITE 2 AC1 8 FE A 302 INS A 303 OH A 304 HOH A 310 SITE 1 AC2 6 ASP A 124 HIS A 194 HIS A 220 FE A 301 SITE 2 AC2 6 INS A 303 OH A 304 SITE 1 AC3 7 HIS A 123 ASP A 124 HIS A 220 ASP A 253 SITE 2 AC3 7 FE A 301 FE A 302 INS A 303 SITE 1 AC4 17 ARG A 29 TYR A 44 ASP A 85 SER A 87 SITE 2 AC4 17 ASP A 88 ASP A 124 LYS A 127 GLY A 141 SITE 3 AC4 17 ASP A 142 HIS A 194 HIS A 220 SER A 221 SITE 4 AC4 17 TYR A 223 FE A 301 FE A 302 OH A 304 SITE 5 AC4 17 HOH A 386 SITE 1 AC5 5 VAL A 146 GLY A 147 CYS A 148 ASN A 164 SITE 2 AC5 5 ASP A 166 CRYST1 44.600 77.200 85.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011710 0.00000