HEADER HYDROLASE 14-JAN-08 3BXP TITLE CRYSTAL STRUCTURE OF A PUTATIVE CARBOXYLESTERASE (LP_2923) FROM TITLE 2 LACTOBACILLUS PLANTARUM WCFS1 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPASE/ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM WCFS1; SOURCE 3 ORGANISM_TAXID: 220668; SOURCE 4 STRAIN: WCFS1 / NCIMB 8826; SOURCE 5 ATCC: BAA-793; SOURCE 6 GENE: NP_786266.1, LP_2923; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE CARBOXYLESTERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3BXP 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BXP 1 REMARK LINK REVDAT 5 25-OCT-17 3BXP 1 REMARK REVDAT 4 13-JUL-11 3BXP 1 VERSN REVDAT 3 28-JUL-10 3BXP 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BXP 1 VERSN REVDAT 1 29-JAN-08 3BXP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE CARBOXYLESTERASE (NP_786266.1) JRNL TITL 2 FROM LACTOBACILLUS PLANTARUM AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 59208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4298 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2733 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5899 ; 1.527 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6676 ; 1.079 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 6.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;32.966 ;23.880 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;11.926 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.119 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4877 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 876 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2681 ; 1.917 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1081 ; 0.587 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4324 ; 2.766 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1617 ; 4.129 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1575 ; 5.611 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9313 31.5463 44.6912 REMARK 3 T TENSOR REMARK 3 T11: -0.0215 T22: -0.0208 REMARK 3 T33: -0.0313 T12: -0.0111 REMARK 3 T13: 0.0063 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.5254 L22: 0.6750 REMARK 3 L33: 0.3616 L12: 0.0481 REMARK 3 L13: 0.1517 L23: -0.0103 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0370 S13: -0.0193 REMARK 3 S21: 0.0030 S22: -0.0106 S23: 0.0644 REMARK 3 S31: -0.0487 S32: -0.0211 S33: 0.0035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1381 48.2340 16.4949 REMARK 3 T TENSOR REMARK 3 T11: -0.0470 T22: -0.0244 REMARK 3 T33: -0.0203 T12: -0.0077 REMARK 3 T13: 0.0024 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.2831 L22: 0.7687 REMARK 3 L33: 0.8606 L12: -0.0972 REMARK 3 L13: 0.0345 L23: -0.0731 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0132 S13: -0.0236 REMARK 3 S21: 0.0258 S22: -0.0086 S23: 0.0398 REMARK 3 S31: 0.0156 S32: -0.0474 S33: 0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. CHLORIDE ION, HEPES AND 1,2-PROPANEDIOL MOLECULES FROM REMARK 3 CRYSTALLIZATION ARE MODELED IN THIS STRUCTURE. REMARK 4 REMARK 4 3BXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59209 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.433 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : 0.53200 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 30.0% 1,2-PROPANEDIOL, 20.0% REMARK 280 PEG 400, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.11100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 232 REMARK 465 HIS A 233 REMARK 465 GLY A 234 REMARK 465 LEU A 235 REMARK 465 ALA A 236 REMARK 465 LEU A 237 REMARK 465 ALA A 238 REMARK 465 ASN A 239 REMARK 465 HIS A 240 REMARK 465 VAL A 241 REMARK 465 THR A 242 REMARK 465 GLN A 243 REMARK 465 LYS A 244 REMARK 465 PRO A 245 REMARK 465 GLY A 246 REMARK 465 LYS A 247 REMARK 465 GLY A 274 REMARK 465 ASN A 275 REMARK 465 TYR A 276 REMARK 465 ASN B 239 REMARK 465 HIS B 240 REMARK 465 VAL B 241 REMARK 465 THR B 242 REMARK 465 GLN B 243 REMARK 465 LYS B 244 REMARK 465 PRO B 245 REMARK 465 GLY B 246 REMARK 465 LYS B 247 REMARK 465 ASP B 248 REMARK 465 LYS B 249 REMARK 465 TYR B 250 REMARK 465 GLY B 274 REMARK 465 ASN B 275 REMARK 465 TYR B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CD OE1 NE2 REMARK 470 ARG A 51 CZ NH1 NH2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 ARG A 137 NE CZ NH1 NH2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LEU A 251 CG CD1 CD2 REMARK 470 ASN A 252 CG OD1 ND2 REMARK 470 ASP A 253 OD1 OD2 REMARK 470 ASP B 27 CG OD1 OD2 REMARK 470 ARG B 51 CZ NH1 NH2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ARG B 178 CZ NH1 NH2 REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 470 ASP B 253 CG OD1 OD2 REMARK 470 GLN B 254 CG CD OE1 NE2 REMARK 470 ARG B 264 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 135 O LEU B 140 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 142 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 104 67.79 63.12 REMARK 500 SER A 116 -116.71 50.27 REMARK 500 SER A 116 -116.93 31.28 REMARK 500 LEU A 159 11.31 -69.32 REMARK 500 ALA A 161 46.57 -101.41 REMARK 500 SER A 203 -162.49 -160.70 REMARK 500 HIS B 104 70.64 67.31 REMARK 500 SER B 116 -124.40 47.86 REMARK 500 TYR B 154 57.28 34.04 REMARK 500 THR B 174 141.61 -176.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR B 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR B 281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379483 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BXP A 1 276 UNP Q88TL9 Q88TL9_LACPL 1 276 DBREF 3BXP B 1 276 UNP Q88TL9 Q88TL9_LACPL 1 276 SEQADV 3BXP GLY A 0 UNP Q88TL9 EXPRESSION TAG SEQADV 3BXP GLY B 0 UNP Q88TL9 EXPRESSION TAG SEQRES 1 A 277 GLY MSE GLN VAL GLU GLN ARG THR LEU ASN THR ALA ALA SEQRES 2 A 277 HIS PRO PHE GLN ILE THR ALA TYR TRP LEU ASP GLN ILE SEQRES 3 A 277 SER ASP PHE GLU THR ALA VAL ASP TYR PRO ILE MSE ILE SEQRES 4 A 277 ILE CYS PRO GLY GLY GLY PHE THR TYR HIS SER GLY ARG SEQRES 5 A 277 GLU GLU ALA PRO ILE ALA THR ARG MSE MSE ALA ALA GLY SEQRES 6 A 277 MSE HIS THR VAL VAL LEU ASN TYR GLN LEU ILE VAL GLY SEQRES 7 A 277 ASP GLN SER VAL TYR PRO TRP ALA LEU GLN GLN LEU GLY SEQRES 8 A 277 ALA THR ILE ASP TRP ILE THR THR GLN ALA SER ALA HIS SEQRES 9 A 277 HIS VAL ASP CYS GLN ARG ILE ILE LEU ALA GLY PHE SER SEQRES 10 A 277 ALA GLY GLY HIS VAL VAL ALA THR TYR ASN GLY VAL ALA SEQRES 11 A 277 THR GLN PRO GLU LEU ARG THR ARG TYR HIS LEU ASP HIS SEQRES 12 A 277 TYR GLN GLY GLN HIS ALA ALA ILE ILE LEU GLY TYR PRO SEQRES 13 A 277 VAL ILE ASP LEU THR ALA GLY PHE PRO THR THR SER ALA SEQRES 14 A 277 ALA ARG ASN GLN ILE THR THR ASP ALA ARG LEU TRP ALA SEQRES 15 A 277 ALA GLN ARG LEU VAL THR PRO ALA SER LYS PRO ALA PHE SEQRES 16 A 277 VAL TRP GLN THR ALA THR ASP GLU SER VAL PRO PRO ILE SEQRES 17 A 277 ASN SER LEU LYS TYR VAL GLN ALA MSE LEU GLN HIS GLN SEQRES 18 A 277 VAL ALA THR ALA TYR HIS LEU PHE GLY SER GLY ILE HIS SEQRES 19 A 277 GLY LEU ALA LEU ALA ASN HIS VAL THR GLN LYS PRO GLY SEQRES 20 A 277 LYS ASP LYS TYR LEU ASN ASP GLN ALA ALA ILE TRP PRO SEQRES 21 A 277 GLN LEU ALA LEU ARG TRP LEU GLN GLU GLN GLY LEU LEU SEQRES 22 A 277 ALA GLY ASN TYR SEQRES 1 B 277 GLY MSE GLN VAL GLU GLN ARG THR LEU ASN THR ALA ALA SEQRES 2 B 277 HIS PRO PHE GLN ILE THR ALA TYR TRP LEU ASP GLN ILE SEQRES 3 B 277 SER ASP PHE GLU THR ALA VAL ASP TYR PRO ILE MSE ILE SEQRES 4 B 277 ILE CYS PRO GLY GLY GLY PHE THR TYR HIS SER GLY ARG SEQRES 5 B 277 GLU GLU ALA PRO ILE ALA THR ARG MSE MSE ALA ALA GLY SEQRES 6 B 277 MSE HIS THR VAL VAL LEU ASN TYR GLN LEU ILE VAL GLY SEQRES 7 B 277 ASP GLN SER VAL TYR PRO TRP ALA LEU GLN GLN LEU GLY SEQRES 8 B 277 ALA THR ILE ASP TRP ILE THR THR GLN ALA SER ALA HIS SEQRES 9 B 277 HIS VAL ASP CYS GLN ARG ILE ILE LEU ALA GLY PHE SER SEQRES 10 B 277 ALA GLY GLY HIS VAL VAL ALA THR TYR ASN GLY VAL ALA SEQRES 11 B 277 THR GLN PRO GLU LEU ARG THR ARG TYR HIS LEU ASP HIS SEQRES 12 B 277 TYR GLN GLY GLN HIS ALA ALA ILE ILE LEU GLY TYR PRO SEQRES 13 B 277 VAL ILE ASP LEU THR ALA GLY PHE PRO THR THR SER ALA SEQRES 14 B 277 ALA ARG ASN GLN ILE THR THR ASP ALA ARG LEU TRP ALA SEQRES 15 B 277 ALA GLN ARG LEU VAL THR PRO ALA SER LYS PRO ALA PHE SEQRES 16 B 277 VAL TRP GLN THR ALA THR ASP GLU SER VAL PRO PRO ILE SEQRES 17 B 277 ASN SER LEU LYS TYR VAL GLN ALA MSE LEU GLN HIS GLN SEQRES 18 B 277 VAL ALA THR ALA TYR HIS LEU PHE GLY SER GLY ILE HIS SEQRES 19 B 277 GLY LEU ALA LEU ALA ASN HIS VAL THR GLN LYS PRO GLY SEQRES 20 B 277 LYS ASP LYS TYR LEU ASN ASP GLN ALA ALA ILE TRP PRO SEQRES 21 B 277 GLN LEU ALA LEU ARG TRP LEU GLN GLU GLN GLY LEU LEU SEQRES 22 B 277 ALA GLY ASN TYR MODRES 3BXP MSE A 1 MET SELENOMETHIONINE MODRES 3BXP MSE A 37 MET SELENOMETHIONINE MODRES 3BXP MSE A 60 MET SELENOMETHIONINE MODRES 3BXP MSE A 61 MET SELENOMETHIONINE MODRES 3BXP MSE A 65 MET SELENOMETHIONINE MODRES 3BXP MSE A 216 MET SELENOMETHIONINE MODRES 3BXP MSE B 1 MET SELENOMETHIONINE MODRES 3BXP MSE B 37 MET SELENOMETHIONINE MODRES 3BXP MSE B 60 MET SELENOMETHIONINE MODRES 3BXP MSE B 61 MET SELENOMETHIONINE MODRES 3BXP MSE B 65 MET SELENOMETHIONINE MODRES 3BXP MSE B 216 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 37 8 HET MSE A 60 8 HET MSE A 61 8 HET MSE A 65 8 HET MSE A 216 8 HET MSE B 1 8 HET MSE B 37 8 HET MSE B 60 8 HET MSE B 61 8 HET MSE B 65 8 HET MSE B 216 8 HET EPE A 277 15 HET PGR A 278 5 HET PGO A 279 5 HET PGO A 280 5 HET PGO A 281 5 HET CL B 277 1 HET EPE B 278 15 HET PGO B 279 5 HET PGR B 280 5 HET PGR B 281 5 HETNAM MSE SELENOMETHIONINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PGR R-1,2-PROPANEDIOL HETNAM PGO S-1,2-PROPANEDIOL HETNAM CL CHLORIDE ION HETSYN EPE HEPES FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 4 PGR 3(C3 H8 O2) FORMUL 5 PGO 4(C3 H8 O2) FORMUL 8 CL CL 1- FORMUL 13 HOH *383(H2 O) HELIX 1 1 GLU A 52 ALA A 63 1 12 HELIX 2 2 PRO A 83 HIS A 104 1 22 HELIX 3 3 SER A 116 ALA A 129 1 14 HELIX 4 4 GLN A 131 TYR A 138 1 8 HELIX 5 5 THR A 166 THR A 174 1 9 HELIX 6 6 ASP A 176 TRP A 180 5 5 HELIX 7 7 ALA A 181 VAL A 186 5 6 HELIX 8 8 PRO A 206 HIS A 219 1 14 HELIX 9 9 ASP A 248 GLN A 269 1 22 HELIX 10 10 GLU B 52 ALA B 63 1 12 HELIX 11 11 PRO B 83 GLN B 99 1 17 HELIX 12 12 GLN B 99 HIS B 104 1 6 HELIX 13 13 ALA B 117 ALA B 129 1 13 HELIX 14 14 GLN B 131 TYR B 138 1 8 HELIX 15 15 THR B 166 THR B 174 1 9 HELIX 16 16 ASP B 176 TRP B 180 5 5 HELIX 17 17 ALA B 181 VAL B 186 5 6 HELIX 18 18 PRO B 206 HIS B 219 1 14 HELIX 19 19 SER B 230 LEU B 235 5 6 HELIX 20 20 ALA B 256 GLN B 269 1 14 SHEET 1 A16 MSE A 1 LEU A 8 0 SHEET 2 A16 PHE A 15 LEU A 22 -1 O ALA A 19 N GLU A 4 SHEET 3 A16 HIS A 66 ASN A 71 -1 O THR A 67 N TYR A 20 SHEET 4 A16 TYR A 34 CYS A 40 1 N ILE A 39 O VAL A 68 SHEET 5 A16 VAL A 105 PHE A 115 1 O ALA A 113 N CYS A 40 SHEET 6 A16 ALA A 149 GLY A 153 1 O ILE A 151 N LEU A 112 SHEET 7 A16 ALA A 193 GLN A 197 1 O PHE A 194 N LEU A 152 SHEET 8 A16 THR A 223 LEU A 227 1 O ALA A 224 N VAL A 195 SHEET 9 A16 THR B 223 PHE B 228 -1 O TYR B 225 N LEU A 227 SHEET 10 A16 ALA B 193 THR B 198 1 N VAL B 195 O ALA B 224 SHEET 11 A16 ALA B 149 GLY B 153 1 N LEU B 152 O PHE B 194 SHEET 12 A16 VAL B 105 PHE B 115 1 N GLY B 114 O GLY B 153 SHEET 13 A16 TYR B 34 CYS B 40 1 N ILE B 38 O ALA B 113 SHEET 14 A16 HIS B 66 ASN B 71 1 O VAL B 68 N ILE B 39 SHEET 15 A16 PHE B 15 LEU B 22 -1 N TYR B 20 O THR B 67 SHEET 16 A16 MSE B 1 LEU B 8 -1 N GLU B 4 O ALA B 19 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N GLN A 2 1555 1555 1.32 LINK C ILE A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N ILE A 38 1555 1555 1.33 LINK C ARG A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N MSE A 61 1555 1555 1.31 LINK C MSE A 61 N ALA A 62 1555 1555 1.32 LINK C GLY A 64 N MSE A 65 1555 1555 1.32 LINK C MSE A 65 N HIS A 66 1555 1555 1.32 LINK C ALA A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C ILE B 36 N MSE B 37 1555 1555 1.30 LINK C MSE B 37 N ILE B 38 1555 1555 1.32 LINK C ARG B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N ALA B 62 1555 1555 1.34 LINK C GLY B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N HIS B 66 1555 1555 1.31 LINK C ALA B 215 N MSE B 216 1555 1555 1.33 LINK C MSE B 216 N LEU B 217 1555 1555 1.34 CISPEP 1 TYR A 82 PRO A 83 0 4.86 CISPEP 2 PHE A 163 PRO A 164 0 1.02 CISPEP 3 TYR B 82 PRO B 83 0 4.56 CISPEP 4 PHE B 163 PRO B 164 0 3.41 SITE 1 AC1 1 GLY B 50 SITE 1 AC2 7 ASP A 78 GLN A 79 SER A 80 TRP A 84 SITE 2 AC2 7 GLN A 172 HOH A 350 HOH A 387 SITE 1 AC3 8 ALA A 224 HIS A 226 LEU A 261 GLU A 268 SITE 2 AC3 8 PHE B 228 GLY B 229 SER B 230 HIS B 233 SITE 1 AC4 9 ARG A 135 ASP A 141 TYR A 143 GLN A 144 SITE 2 AC4 9 ARG B 135 ASP B 141 TYR B 143 GLN B 144 SITE 3 AC4 9 HOH B 449 SITE 1 AC5 5 GLN A 108 GLN A 146 ALA A 148 LYS A 191 SITE 2 AC5 5 HOH A 373 SITE 1 AC6 4 ALA A 54 THR A 58 MSE A 61 HOH A 328 SITE 1 AC7 7 ASP B 78 GLN B 79 SER B 80 TRP B 84 SITE 2 AC7 7 GLN B 172 HOH B 383 HOH B 457 SITE 1 AC8 6 TYR B 20 ALA B 54 ALA B 57 THR B 58 SITE 2 AC8 6 HOH B 395 HOH B 432 SITE 1 AC9 4 GLN A 214 PRO B 206 ILE B 207 HOH B 437 SITE 1 BC1 9 ASP A 33 ALA A 100 SER A 101 VAL A 105 SITE 2 BC1 9 HOH A 323 ASP B 33 VAL B 105 HOH B 358 SITE 3 BC1 9 HOH B 359 CRYST1 53.595 94.222 58.758 90.00 107.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018659 0.000000 0.005871 0.00000 SCALE2 0.000000 0.010613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017841 0.00000