HEADER TRANSFERASE 15-JAN-08 3BXY TITLE CRYSTAL STRUCTURE OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE FROM TITLE 2 E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- COMPND 3 SUCCINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE, THP COMPND 6 SUCCINYLTRANSFERASE, TETRAHYDROPICOLINATE SUCCINYLASE; COMPND 7 EC: 2.3.1.117; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: O157:H7; SOURCE 5 GENE: DAPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFO4 KEYWDS LEFT-HANDED BETA-HELIX, STRUCTURAL GENOMICS, CIHR, CANADIAN KEYWDS 2 INSTITUTES OF HEALTH RESEARCH, MONTREAL-KINGSTON BACTERIAL KEYWDS 3 STRUCTURAL GENOMICS INITIATIVE, BSGI, ACYLTRANSFERASE, AMINO-ACID KEYWDS 4 BIOSYNTHESIS, DIAMINOPIMELATE BIOSYNTHESIS, LYSINE BIOSYNTHESIS, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 5 30-AUG-23 3BXY 1 SEQADV REVDAT 4 13-JUL-11 3BXY 1 VERSN REVDAT 3 24-FEB-09 3BXY 1 VERSN REVDAT 2 05-AUG-08 3BXY 1 JRNL REVDAT 1 29-JAN-08 3BXY 0 JRNL AUTH L.NGUYEN,G.KOZLOV,K.GEHRING JRNL TITL STRUCTURE OF ESCHERICHIA COLI TETRAHYDRODIPICOLINATE JRNL TITL 2 N-SUCCINYLTRANSFERASE REVEALS THE ROLE OF A CONSERVED JRNL TITL 3 C-TERMINAL HELIX IN COOPERATIVE SUBSTRATE BINDING. JRNL REF FEBS LETT. V. 582 623 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18242192 JRNL DOI 10.1016/J.FEBSLET.2008.01.032 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.455 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2155 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2922 ; 1.359 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;36.829 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;14.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.689 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1638 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 976 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1482 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 169 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 0.769 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2192 ; 1.272 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 855 ; 2.057 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 730 ; 3.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7830 -4.1310 9.5950 REMARK 3 T TENSOR REMARK 3 T11: .1327 T22: .0623 REMARK 3 T33: .0681 T12: -.0023 REMARK 3 T13: .0333 T23: -.0479 REMARK 3 L TENSOR REMARK 3 L11: .7560 L22: 2.8569 REMARK 3 L33: .4853 L12: .3295 REMARK 3 L13: .1257 L23: .4815 REMARK 3 S TENSOR REMARK 3 S11: .0224 S12: -.0303 S13: .1007 REMARK 3 S21: .0950 S22: -.0407 S23: .0705 REMARK 3 S31: -.1814 S32: .0595 S33: .0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0040 -18.1890 -6.4070 REMARK 3 T TENSOR REMARK 3 T11: .0506 T22: .0167 REMARK 3 T33: .1119 T12: .0112 REMARK 3 T13: -.0069 T23: -.0099 REMARK 3 L TENSOR REMARK 3 L11: .7156 L22: .7714 REMARK 3 L33: 1.8902 L12: .0994 REMARK 3 L13: -.1321 L23: .0761 REMARK 3 S TENSOR REMARK 3 S11: .0021 S12: .0042 S13: .1026 REMARK 3 S21: -.0161 S22: -.0220 S23: .1074 REMARK 3 S31: -.0824 S32: -.0537 S33: .0199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9772 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9M TRI-SODIUM CITRATE, 0.1M TRIS REMARK 280 -HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.61450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.61450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.61450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED BY THE THREE- REMARK 300 FOLD SYMMETRY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9990 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 51.46200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.13480 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 102.92400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A 262 REMARK 465 LYS A 263 REMARK 465 VAL A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 359 O HOH A 391 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 274 C ASP A 274 O 0.183 REMARK 500 ASP A 274 C ASP A 274 OXT 0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 -76.88 -105.87 REMARK 500 PRO A 108 38.62 -94.73 REMARK 500 CYS A 149 -3.32 73.97 REMARK 500 SER A 203 -168.76 -77.49 REMARK 500 LYS A 259 11.36 -68.26 REMARK 500 THR A 260 -8.65 -151.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TDT RELATED DB: PDB REMARK 900 RELATED ID: 2TDT RELATED DB: PDB REMARK 900 RELATED ID: 3TDT RELATED DB: PDB REMARK 900 RELATED ID: 1KGQ RELATED DB: PDB REMARK 900 RELATED ID: 1KGT RELATED DB: PDB REMARK 900 RELATED ID: DAPD_ECO57 RELATED DB: TARGETDB DBREF 3BXY A 2 274 UNP Q8X8Y7 DAPD_ECO57 2 274 SEQADV 3BXY MET A -10 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY GLY A -9 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY SER A -8 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY SER A -7 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -6 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -5 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -4 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -3 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -2 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -1 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY GLY A 0 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY SER A 1 UNP Q8X8Y7 EXPRESSION TAG SEQRES 1 A 285 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER GLN SEQRES 2 A 285 GLN LEU GLN ASN ILE ILE GLU THR ALA PHE GLU ARG ARG SEQRES 3 A 285 ALA GLU ILE THR PRO ALA ASN ALA ASP THR VAL THR ARG SEQRES 4 A 285 GLU ALA VAL ASN GLN VAL ILE ALA LEU LEU ASP SER GLY SEQRES 5 A 285 ALA LEU ARG VAL ALA GLU LYS ILE ASP GLY GLN TRP VAL SEQRES 6 A 285 THR HIS GLN TRP LEU LYS LYS ALA VAL LEU LEU SER PHE SEQRES 7 A 285 ARG ILE ASN ASP ASN GLN VAL ILE GLU GLY ALA GLU SER SEQRES 8 A 285 ARG TYR PHE ASP LYS VAL PRO MET LYS PHE ALA ASP TYR SEQRES 9 A 285 ASP GLU ALA ARG PHE GLN LYS GLU GLY PHE ARG VAL VAL SEQRES 10 A 285 PRO PRO ALA ALA VAL ARG GLN GLY ALA PHE ILE ALA ARG SEQRES 11 A 285 ASN THR VAL LEU MET PRO SER TYR VAL ASN ILE GLY ALA SEQRES 12 A 285 TYR VAL ASP GLU GLY THR MET VAL ASP THR TRP ALA THR SEQRES 13 A 285 VAL GLY SER CYS ALA GLN ILE GLY LYS ASN VAL HIS LEU SEQRES 14 A 285 SER GLY GLY VAL GLY ILE GLY GLY VAL LEU GLU PRO LEU SEQRES 15 A 285 GLN ALA ASN PRO THR ILE ILE GLU ASP ASN CYS PHE ILE SEQRES 16 A 285 GLY ALA ARG SER GLU VAL VAL GLU GLY VAL ILE VAL GLU SEQRES 17 A 285 GLU GLY SER VAL ILE SER MET GLY VAL TYR ILE GLY GLN SEQRES 18 A 285 SER THR ARG ILE TYR ASP ARG GLU THR GLY ASP ILE HIS SEQRES 19 A 285 TYR GLY ARG VAL PRO ALA GLY SER VAL VAL VAL SER GLY SEQRES 20 A 285 ASN LEU PRO SER LYS ASP GLY LYS TYR SER LEU TYR CYS SEQRES 21 A 285 ALA VAL ILE VAL LYS LYS VAL ASP ALA LYS THR ARG GLY SEQRES 22 A 285 LYS VAL GLY ILE ASN GLU LEU LEU ARG THR ILE ASP FORMUL 2 HOH *175(H2 O) HELIX 1 1 GLY A 0 ARG A 14 1 15 HELIX 2 2 ARG A 15 ILE A 18 5 4 HELIX 3 3 ASP A 24 SER A 40 1 17 HELIX 4 4 HIS A 56 ASN A 70 1 15 HELIX 5 5 ASP A 94 GLY A 102 1 9 HELIX 6 6 ASP A 257 ARG A 261 5 5 HELIX 7 7 GLY A 265 THR A 272 1 8 SHEET 1 A 2 ALA A 46 ILE A 49 0 SHEET 2 A 2 GLN A 52 THR A 55 -1 O GLN A 52 N ILE A 49 SHEET 1 B 2 GLN A 73 GLU A 76 0 SHEET 2 B 2 ARG A 81 ASP A 84 -1 O TYR A 82 N ILE A 75 SHEET 1 C10 ARG A 104 VAL A 105 0 SHEET 2 C10 VAL A 122 LEU A 123 1 O LEU A 123 N ARG A 104 SHEET 3 C10 MET A 139 VAL A 140 1 O VAL A 140 N VAL A 122 SHEET 4 C10 HIS A 157 LEU A 158 1 O LEU A 158 N MET A 139 SHEET 5 C10 PHE A 183 ILE A 184 1 O ILE A 184 N HIS A 157 SHEET 6 C10 VAL A 201 ILE A 202 1 O ILE A 202 N PHE A 183 SHEET 7 C10 SER A 231 PRO A 239 1 O VAL A 233 N VAL A 201 SHEET 8 C10 SER A 246 LYS A 255 -1 O LYS A 254 N VAL A 232 SHEET 9 C10 ILE A 214 ASP A 216 1 N TYR A 215 O ALA A 250 SHEET 10 C10 ILE A 222 HIS A 223 -1 O HIS A 223 N ILE A 214 SHEET 1 D 6 ALA A 110 VAL A 111 0 SHEET 2 D 6 SER A 126 VAL A 128 1 O SER A 126 N ALA A 110 SHEET 3 D 6 ALA A 144 VAL A 146 1 O VAL A 146 N TYR A 127 SHEET 4 D 6 GLY A 163 ILE A 164 1 O ILE A 164 N THR A 145 SHEET 5 D 6 GLU A 189 VAL A 190 1 O VAL A 190 N GLY A 163 SHEET 6 D 6 TYR A 207 ILE A 208 1 O ILE A 208 N GLU A 189 SHEET 1 E 6 PHE A 116 ILE A 117 0 SHEET 2 E 6 TYR A 133 VAL A 134 1 O VAL A 134 N PHE A 116 SHEET 3 E 6 GLN A 151 ILE A 152 1 O ILE A 152 N TYR A 133 SHEET 4 E 6 ILE A 177 ILE A 178 1 O ILE A 178 N GLN A 151 SHEET 5 E 6 ILE A 195 VAL A 196 1 O VAL A 196 N ILE A 177 SHEET 6 E 6 ARG A 226 VAL A 227 1 O VAL A 227 N ILE A 195 CISPEP 1 PRO A 107 PRO A 108 0 0.71 CISPEP 2 GLU A 169 PRO A 170 0 -1.38 CRYST1 102.924 102.924 69.229 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009716 0.005609 0.000000 0.00000 SCALE2 0.000000 0.011219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014445 0.00000