HEADER TRANSPORT PROTEIN 15-JAN-08 3BXZ TITLE CRYSTAL STRUCTURE OF THE ISOLATED DEAD MOTOR DOMAINS FROM ESCHERICHIA TITLE 2 COLI SECA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 6-227, 368-609; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SECA, AZI, PEA, PRLD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-19(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJZ7 KEYWDS PROTEIN TRANSPORT, TRANSLOCATION, DEAD MOTOR DOMAINS, CLOSED KEYWDS 2 CONFORMATION, NUCLEOTIDE-BINDING, ATP-BINDING, MEMBRANE, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.NITHIANANTHAM,S.NAMJOSHI,B.H.SHILTON REVDAT 7 30-AUG-23 3BXZ 1 REMARK REVDAT 6 20-OCT-21 3BXZ 1 REMARK SEQADV LINK REVDAT 5 23-AUG-17 3BXZ 1 SOURCE REMARK REVDAT 4 09-JUN-09 3BXZ 1 REVDAT REVDAT 3 24-FEB-09 3BXZ 1 VERSN REVDAT 2 16-DEC-08 3BXZ 1 JRNL REVDAT 1 30-SEP-08 3BXZ 0 JRNL AUTH S.NITHIANANTHAM,B.H.SHILTON JRNL TITL ANALYSIS OF THE ISOLATED SECA DEAD MOTOR SUGGESTS A JRNL TITL 2 MECHANISM FOR CHEMICAL-MECHANICAL COUPLING. JRNL REF J.MOL.BIOL. V. 383 380 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18761349 JRNL DOI 10.1016/J.JMB.2008.08.022 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2317 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 388 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.48300 REMARK 3 B22 (A**2) : 3.21800 REMARK 3 B33 (A**2) : 0.26500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.55 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.66 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.924 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.374 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.148 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.610 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 67.52 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 3 : ADP_MG.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : SPD_PAR.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE REMARK 4 REMARK 4 3BXZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97902 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23500 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.575 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2FSI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% ETHYLENE GLYCOL, 0.025M REMARK 280 SPERMIDINE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.91150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.68050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.91150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.68050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 VAL A 9 REMARK 465 PHE A 10 REMARK 465 SER A 226 REMARK 465 GLY A 227 REMARK 465 ALA A 368 REMARK 465 ASN A 369 REMARK 465 GLN A 370 REMARK 465 THR A 371 REMARK 465 MET A 595 REMARK 465 ARG A 596 REMARK 465 ILE A 597 REMARK 465 PHE A 598 REMARK 465 ALA A 599 REMARK 465 SER A 600 REMARK 465 ASP A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 SER A 604 REMARK 465 GLY A 605 REMARK 465 MET A 606 REMARK 465 MET A 607 REMARK 465 ARG A 608 REMARK 465 LYS A 609 REMARK 465 MET B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 LEU B 6 REMARK 465 THR B 7 REMARK 465 LYS B 8 REMARK 465 VAL B 9 REMARK 465 PHE B 10 REMARK 465 SER B 226 REMARK 465 GLY B 227 REMARK 465 ALA B 368 REMARK 465 ASN B 369 REMARK 465 GLN B 370 REMARK 465 THR B 371 REMARK 465 ILE B 597 REMARK 465 PHE B 598 REMARK 465 ALA B 599 REMARK 465 SER B 600 REMARK 465 ASP B 601 REMARK 465 ARG B 602 REMARK 465 VAL B 603 REMARK 465 SER B 604 REMARK 465 GLY B 605 REMARK 465 MET B 606 REMARK 465 MET B 607 REMARK 465 ARG B 608 REMARK 465 LYS B 609 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 20.07 -69.88 REMARK 500 LEU A 114 -71.83 -65.24 REMARK 500 ALA A 120 24.09 -72.29 REMARK 500 GLU A 141 -70.33 -39.63 REMARK 500 ASN A 142 37.53 -92.88 REMARK 500 LEU A 150 9.55 -61.28 REMARK 500 ALA A 172 173.33 -59.88 REMARK 500 MET A 191 32.91 -98.96 REMARK 500 GLU A 196 10.19 -67.30 REMARK 500 HIS A 204 -81.80 -109.10 REMARK 500 ILE A 216 -61.74 -122.64 REMARK 500 GLU A 218 43.45 -82.43 REMARK 500 ALA A 394 -30.17 -151.73 REMARK 500 THR A 396 -76.90 -51.77 REMARK 500 GLU A 397 31.34 -89.75 REMARK 500 ILE A 404 -51.78 -130.27 REMARK 500 LYS A 434 -77.00 -72.03 REMARK 500 GLU A 444 -72.04 -67.97 REMARK 500 GLU A 460 -71.82 -46.08 REMARK 500 HIS A 476 -168.12 -111.48 REMARK 500 PHE A 483 77.93 -102.86 REMARK 500 PRO A 497 -37.38 -31.84 REMARK 500 MET A 506 53.63 -113.38 REMARK 500 ALA A 507 -79.43 -67.52 REMARK 500 GLU A 527 -19.47 -49.50 REMARK 500 ALA A 531 -3.35 -57.79 REMARK 500 ILE A 537 -43.52 -133.27 REMARK 500 HIS A 545 -75.90 -56.42 REMARK 500 ASP A 568 32.26 -81.05 REMARK 500 ARG A 574 -9.20 -56.53 REMARK 500 GLU B 61 20.53 -70.25 REMARK 500 LEU B 114 -71.51 -64.41 REMARK 500 ALA B 120 23.69 -73.41 REMARK 500 GLU B 141 -70.75 -39.43 REMARK 500 ASN B 142 37.33 -92.37 REMARK 500 LEU B 150 9.65 -62.69 REMARK 500 ALA B 172 172.49 -58.46 REMARK 500 MET B 191 31.97 -99.59 REMARK 500 GLU B 196 10.53 -67.32 REMARK 500 HIS B 204 -80.41 -112.16 REMARK 500 GLU B 210 45.10 72.43 REMARK 500 ILE B 216 -59.21 -120.35 REMARK 500 ALA B 219 52.01 -64.13 REMARK 500 THR B 221 106.93 62.69 REMARK 500 ALA B 394 -27.58 -149.44 REMARK 500 THR B 396 -84.59 -58.79 REMARK 500 ILE B 404 -51.37 -130.70 REMARK 500 LYS B 434 -77.61 -71.63 REMARK 500 GLU B 444 -72.73 -66.83 REMARK 500 GLU B 460 -72.13 -46.31 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 901 O1B REMARK 620 2 HOH A 966 O 76.7 REMARK 620 3 HOH A 967 O 83.2 159.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD B 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 902 DBREF 3BXZ A 6 227 UNP P10408 SECA_ECOLI 6 227 DBREF 3BXZ A 368 609 UNP P10408 SECA_ECOLI 368 609 DBREF 3BXZ B 6 227 UNP P10408 SECA_ECOLI 6 227 DBREF 3BXZ B 368 609 UNP P10408 SECA_ECOLI 368 609 SEQADV 3BXZ MET A -1 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS A 0 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS A 1 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS A 2 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS A 3 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS A 4 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS A 5 UNP P10408 EXPRESSION TAG SEQADV 3BXZ ALA A 368 UNP P10408 GLU 368 ENGINEERED MUTATION SEQADV 3BXZ MET B -1 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS B 0 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS B 1 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS B 2 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS B 3 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS B 4 UNP P10408 EXPRESSION TAG SEQADV 3BXZ HIS B 5 UNP P10408 EXPRESSION TAG SEQADV 3BXZ ALA B 368 UNP P10408 GLU 368 ENGINEERED MUTATION SEQRES 1 A 471 MET HIS HIS HIS HIS HIS HIS LEU THR LYS VAL PHE GLY SEQRES 2 A 471 SER ARG ASN ASP ARG THR LEU ARG ARG MET ARG LYS VAL SEQRES 3 A 471 VAL ASN ILE ILE ASN ALA MET GLU PRO GLU MET GLU LYS SEQRES 4 A 471 LEU SER ASP GLU GLU LEU LYS GLY LYS THR ALA GLU PHE SEQRES 5 A 471 ARG ALA ARG LEU GLU LYS GLY GLU VAL LEU GLU ASN LEU SEQRES 6 A 471 ILE PRO GLU ALA PHE ALA VAL VAL ARG GLU ALA SER LYS SEQRES 7 A 471 ARG VAL PHE GLY MET ARG HIS PHE ASP VAL GLN LEU LEU SEQRES 8 A 471 GLY GLY MET VAL LEU ASN GLU ARG CYS ILE ALA GLU MET SEQRES 9 A 471 ARG THR GLY GLU GLY LYS THR LEU THR ALA THR LEU PRO SEQRES 10 A 471 ALA TYR LEU ASN ALA LEU THR GLY LYS GLY VAL HIS VAL SEQRES 11 A 471 VAL THR VAL ASN ASP TYR LEU ALA GLN ARG ASP ALA GLU SEQRES 12 A 471 ASN ASN ARG PRO LEU PHE GLU PHE LEU GLY LEU THR VAL SEQRES 13 A 471 GLY ILE ASN LEU PRO GLY MET PRO ALA PRO ALA LYS ARG SEQRES 14 A 471 GLU ALA TYR ALA ALA ASP ILE THR TYR GLY THR ASN ASN SEQRES 15 A 471 GLU TYR GLY PHE ASP TYR LEU ARG ASP ASN MET ALA PHE SEQRES 16 A 471 SER PRO GLU GLU ARG VAL GLN ARG LYS LEU HIS TYR ALA SEQRES 17 A 471 LEU VAL ASP GLU VAL ASP SER ILE LEU ILE ASP GLU ALA SEQRES 18 A 471 ARG THR PRO LEU ILE ILE SER GLY ALA ASN GLN THR LEU SEQRES 19 A 471 ALA SER ILE THR PHE GLN ASN TYR PHE ARG LEU TYR GLU SEQRES 20 A 471 LYS LEU ALA GLY MET THR GLY THR ALA ASP THR GLU ALA SEQRES 21 A 471 PHE GLU PHE SER SER ILE TYR LYS LEU ASP THR VAL VAL SEQRES 22 A 471 VAL PRO THR ASN ARG PRO MET ILE ARG LYS ASP LEU PRO SEQRES 23 A 471 ASP LEU VAL TYR MET THR GLU ALA GLU LYS ILE GLN ALA SEQRES 24 A 471 ILE ILE GLU ASP ILE LYS GLU ARG THR ALA LYS GLY GLN SEQRES 25 A 471 PRO VAL LEU VAL GLY THR ILE SER ILE GLU LYS SER GLU SEQRES 26 A 471 LEU VAL SER ASN GLU LEU THR LYS ALA GLY ILE LYS HIS SEQRES 27 A 471 ASN VAL LEU ASN ALA LYS PHE HIS ALA ASN GLU ALA ALA SEQRES 28 A 471 ILE VAL ALA GLN ALA GLY TYR PRO ALA ALA VAL THR ILE SEQRES 29 A 471 ALA THR ASN MET ALA GLY ARG GLY THR ASP ILE VAL LEU SEQRES 30 A 471 GLY GLY SER TRP GLN ALA GLU VAL ALA ALA LEU GLU ASN SEQRES 31 A 471 PRO THR ALA GLU GLN ILE GLU LYS ILE LYS ALA ASP TRP SEQRES 32 A 471 GLN VAL ARG HIS ASP ALA VAL LEU GLU ALA GLY GLY LEU SEQRES 33 A 471 HIS ILE ILE GLY THR GLU ARG HIS GLU SER ARG ARG ILE SEQRES 34 A 471 ASP ASN GLN LEU ARG GLY ARG SER GLY ARG GLN GLY ASP SEQRES 35 A 471 ALA GLY SER SER ARG PHE TYR LEU SER MET GLU ASP ALA SEQRES 36 A 471 LEU MET ARG ILE PHE ALA SER ASP ARG VAL SER GLY MET SEQRES 37 A 471 MET ARG LYS SEQRES 1 B 471 MET HIS HIS HIS HIS HIS HIS LEU THR LYS VAL PHE GLY SEQRES 2 B 471 SER ARG ASN ASP ARG THR LEU ARG ARG MET ARG LYS VAL SEQRES 3 B 471 VAL ASN ILE ILE ASN ALA MET GLU PRO GLU MET GLU LYS SEQRES 4 B 471 LEU SER ASP GLU GLU LEU LYS GLY LYS THR ALA GLU PHE SEQRES 5 B 471 ARG ALA ARG LEU GLU LYS GLY GLU VAL LEU GLU ASN LEU SEQRES 6 B 471 ILE PRO GLU ALA PHE ALA VAL VAL ARG GLU ALA SER LYS SEQRES 7 B 471 ARG VAL PHE GLY MET ARG HIS PHE ASP VAL GLN LEU LEU SEQRES 8 B 471 GLY GLY MET VAL LEU ASN GLU ARG CYS ILE ALA GLU MET SEQRES 9 B 471 ARG THR GLY GLU GLY LYS THR LEU THR ALA THR LEU PRO SEQRES 10 B 471 ALA TYR LEU ASN ALA LEU THR GLY LYS GLY VAL HIS VAL SEQRES 11 B 471 VAL THR VAL ASN ASP TYR LEU ALA GLN ARG ASP ALA GLU SEQRES 12 B 471 ASN ASN ARG PRO LEU PHE GLU PHE LEU GLY LEU THR VAL SEQRES 13 B 471 GLY ILE ASN LEU PRO GLY MET PRO ALA PRO ALA LYS ARG SEQRES 14 B 471 GLU ALA TYR ALA ALA ASP ILE THR TYR GLY THR ASN ASN SEQRES 15 B 471 GLU TYR GLY PHE ASP TYR LEU ARG ASP ASN MET ALA PHE SEQRES 16 B 471 SER PRO GLU GLU ARG VAL GLN ARG LYS LEU HIS TYR ALA SEQRES 17 B 471 LEU VAL ASP GLU VAL ASP SER ILE LEU ILE ASP GLU ALA SEQRES 18 B 471 ARG THR PRO LEU ILE ILE SER GLY ALA ASN GLN THR LEU SEQRES 19 B 471 ALA SER ILE THR PHE GLN ASN TYR PHE ARG LEU TYR GLU SEQRES 20 B 471 LYS LEU ALA GLY MET THR GLY THR ALA ASP THR GLU ALA SEQRES 21 B 471 PHE GLU PHE SER SER ILE TYR LYS LEU ASP THR VAL VAL SEQRES 22 B 471 VAL PRO THR ASN ARG PRO MET ILE ARG LYS ASP LEU PRO SEQRES 23 B 471 ASP LEU VAL TYR MET THR GLU ALA GLU LYS ILE GLN ALA SEQRES 24 B 471 ILE ILE GLU ASP ILE LYS GLU ARG THR ALA LYS GLY GLN SEQRES 25 B 471 PRO VAL LEU VAL GLY THR ILE SER ILE GLU LYS SER GLU SEQRES 26 B 471 LEU VAL SER ASN GLU LEU THR LYS ALA GLY ILE LYS HIS SEQRES 27 B 471 ASN VAL LEU ASN ALA LYS PHE HIS ALA ASN GLU ALA ALA SEQRES 28 B 471 ILE VAL ALA GLN ALA GLY TYR PRO ALA ALA VAL THR ILE SEQRES 29 B 471 ALA THR ASN MET ALA GLY ARG GLY THR ASP ILE VAL LEU SEQRES 30 B 471 GLY GLY SER TRP GLN ALA GLU VAL ALA ALA LEU GLU ASN SEQRES 31 B 471 PRO THR ALA GLU GLN ILE GLU LYS ILE LYS ALA ASP TRP SEQRES 32 B 471 GLN VAL ARG HIS ASP ALA VAL LEU GLU ALA GLY GLY LEU SEQRES 33 B 471 HIS ILE ILE GLY THR GLU ARG HIS GLU SER ARG ARG ILE SEQRES 34 B 471 ASP ASN GLN LEU ARG GLY ARG SER GLY ARG GLN GLY ASP SEQRES 35 B 471 ALA GLY SER SER ARG PHE TYR LEU SER MET GLU ASP ALA SEQRES 36 B 471 LEU MET ARG ILE PHE ALA SER ASP ARG VAL SER GLY MET SEQRES 37 B 471 MET ARG LYS HET MG A 903 1 HET SPD A 905 10 HET ADP A 901 27 HET MG B 904 1 HET SPD B 906 10 HET ADP B 902 27 HETNAM MG MAGNESIUM ION HETNAM SPD SPERMIDINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) FORMUL 3 MG 2(MG 2+) FORMUL 4 SPD 2(C7 H19 N3) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 HOH *171(H2 O) HELIX 1 1 GLY A 11 MET A 31 1 21 HELIX 2 2 MET A 31 GLU A 36 1 6 HELIX 3 3 SER A 39 GLY A 45 1 7 HELIX 4 4 GLY A 45 LYS A 56 1 12 HELIX 5 5 VAL A 59 ASN A 62 5 4 HELIX 6 6 LEU A 63 PHE A 79 1 17 HELIX 7 7 PHE A 84 LEU A 94 1 11 HELIX 8 8 GLY A 107 ALA A 112 1 6 HELIX 9 9 ALA A 112 ALA A 120 1 9 HELIX 10 10 ASN A 132 ASN A 142 1 11 HELIX 11 11 ASN A 143 LEU A 150 1 8 HELIX 12 12 PRO A 162 ALA A 172 1 11 HELIX 13 13 ASN A 179 MET A 191 1 13 HELIX 14 14 SER A 194 ARG A 198 5 5 HELIX 15 15 GLU A 210 ILE A 216 1 7 HELIX 16 16 ASP A 217 ARG A 220 5 4 HELIX 17 17 PHE A 377 TYR A 384 5 8 HELIX 18 18 PHE A 399 TYR A 405 1 7 HELIX 19 19 THR A 430 GLY A 449 1 20 HELIX 20 20 SER A 458 ALA A 472 1 15 HELIX 21 21 PHE A 483 ALA A 492 1 10 HELIX 22 22 TRP A 519 ALA A 524 1 6 HELIX 23 23 ILE A 534 ALA A 539 1 6 HELIX 24 24 ASP A 540 ALA A 551 1 12 HELIX 25 25 ARG A 566 ARG A 574 1 9 HELIX 26 26 SER A 575 ASP A 580 5 6 HELIX 27 27 GLU A 591 ALA A 593 5 3 HELIX 28 28 GLY B 11 MET B 31 1 21 HELIX 29 29 MET B 31 GLU B 36 1 6 HELIX 30 30 SER B 39 GLY B 45 1 7 HELIX 31 31 GLY B 45 LYS B 56 1 12 HELIX 32 32 VAL B 59 ASN B 62 5 4 HELIX 33 33 LEU B 63 PHE B 79 1 17 HELIX 34 34 PHE B 84 LEU B 94 1 11 HELIX 35 35 GLY B 107 ALA B 112 1 6 HELIX 36 36 ALA B 112 ALA B 120 1 9 HELIX 37 37 ASN B 132 ASN B 142 1 11 HELIX 38 38 ASN B 143 LEU B 150 1 8 HELIX 39 39 PRO B 162 ALA B 172 1 11 HELIX 40 40 ASN B 179 MET B 191 1 13 HELIX 41 41 SER B 194 ARG B 198 5 5 HELIX 42 42 GLU B 210 ILE B 216 1 7 HELIX 43 43 ASN B 379 LEU B 383 5 5 HELIX 44 44 PHE B 399 TYR B 405 1 7 HELIX 45 45 THR B 430 GLY B 449 1 20 HELIX 46 46 SER B 458 ALA B 472 1 15 HELIX 47 47 PHE B 483 ALA B 492 1 10 HELIX 48 48 TRP B 519 ALA B 524 1 6 HELIX 49 49 ILE B 534 ALA B 539 1 6 HELIX 50 50 ASP B 540 ALA B 551 1 12 HELIX 51 51 ARG B 566 ARG B 574 1 9 HELIX 52 52 SER B 575 ASP B 580 5 6 HELIX 53 53 MET B 590 LEU B 594 1 5 SHEET 1 A 7 VAL A 154 ILE A 156 0 SHEET 2 A 7 ILE A 174 THR A 178 1 O ILE A 174 N GLY A 155 SHEET 3 A 7 VAL A 126 THR A 130 1 N VAL A 126 O THR A 175 SHEET 4 A 7 TYR A 205 ASP A 209 1 O TYR A 205 N HIS A 127 SHEET 5 A 7 LYS A 386 THR A 391 1 O ALA A 388 N VAL A 208 SHEET 6 A 7 CYS A 98 GLU A 101 1 N ALA A 100 O GLY A 389 SHEET 7 A 7 ASP A 408 VAL A 411 1 O VAL A 410 N ILE A 99 SHEET 1 B 2 LEU A 223 ILE A 224 0 SHEET 2 B 2 ALA A 373 SER A 374 -1 O ALA A 373 N ILE A 224 SHEET 1 C 3 LYS A 421 ASP A 422 0 SHEET 2 C 3 SER A 583 SER A 589 1 O SER A 584 N LYS A 421 SHEET 3 C 3 LEU A 426 TYR A 428 1 N LEU A 426 O PHE A 586 SHEET 1 D 6 LYS A 421 ASP A 422 0 SHEET 2 D 6 SER A 583 SER A 589 1 O SER A 584 N LYS A 421 SHEET 3 D 6 HIS A 555 GLY A 558 1 N GLY A 558 O TYR A 587 SHEET 4 D 6 VAL A 452 GLY A 455 1 N LEU A 453 O ILE A 557 SHEET 5 D 6 VAL A 500 ALA A 503 1 O ALA A 503 N VAL A 454 SHEET 6 D 6 VAL A 478 LEU A 479 1 N LEU A 479 O ILE A 502 SHEET 1 E 7 VAL B 154 ILE B 156 0 SHEET 2 E 7 ILE B 174 THR B 178 1 O ILE B 174 N GLY B 155 SHEET 3 E 7 VAL B 126 THR B 130 1 N VAL B 126 O THR B 175 SHEET 4 E 7 TYR B 205 ASP B 209 1 O TYR B 205 N HIS B 127 SHEET 5 E 7 LYS B 386 THR B 391 1 O ALA B 388 N VAL B 208 SHEET 6 E 7 CYS B 98 GLU B 101 1 N ALA B 100 O GLY B 389 SHEET 7 E 7 ASP B 408 VAL B 411 1 O VAL B 410 N ILE B 99 SHEET 1 F 2 LEU B 223 ILE B 224 0 SHEET 2 F 2 ALA B 373 SER B 374 -1 O ALA B 373 N ILE B 224 SHEET 1 G 3 LYS B 421 ASP B 422 0 SHEET 2 G 3 SER B 583 SER B 589 1 O SER B 584 N LYS B 421 SHEET 3 G 3 LEU B 426 TYR B 428 1 N LEU B 426 O PHE B 586 SHEET 1 H 6 LYS B 421 ASP B 422 0 SHEET 2 H 6 SER B 583 SER B 589 1 O SER B 584 N LYS B 421 SHEET 3 H 6 HIS B 555 GLY B 558 1 N GLY B 558 O TYR B 587 SHEET 4 H 6 VAL B 452 GLY B 455 1 N LEU B 453 O ILE B 557 SHEET 5 H 6 VAL B 500 ALA B 503 1 O ALA B 503 N VAL B 454 SHEET 6 H 6 VAL B 478 LEU B 479 1 N LEU B 479 O ILE B 502 LINK O1B ADP A 901 MG MG A 903 1555 1555 2.40 LINK MG MG A 903 O HOH A 966 1555 1555 2.32 LINK MG MG A 903 O HOH A 967 1555 1555 2.33 SITE 1 AC1 1 ASP A 209 SITE 1 AC2 2 GLU A 460 GLU A 463 SITE 1 AC3 2 SER B 466 ASN B 467 SITE 1 AC4 11 MET A 81 ARG A 82 PHE A 84 GLN A 87 SITE 2 AC4 11 THR A 104 GLY A 105 GLU A 106 GLY A 107 SITE 3 AC4 11 LYS A 108 THR A 109 ASP A 512 SITE 1 AC5 13 MET B 81 ARG B 82 HIS B 83 PHE B 84 SITE 2 AC5 13 GLN B 87 ARG B 103 THR B 104 GLY B 105 SITE 3 AC5 13 GLU B 106 GLY B 107 LYS B 108 THR B 109 SITE 4 AC5 13 ASP B 512 CRYST1 177.823 71.361 119.536 90.00 128.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005624 0.000000 0.004525 0.00000 SCALE2 0.000000 0.014013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010737 0.00000