HEADER TRANSFERASE 16-JAN-08 3BYN TITLE CRYSTAL STRUCTURE OF B. SUBTILIS LEVANSUCRASE MUTANT E342A BOUND TO TITLE 2 RAFFINOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVANSUCRASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-D-FRUCTOFURANOSYL TRANSFERASE, SUCROSE 6-FRUCTOSYL COMPND 5 TRANSFERASE; COMPND 6 EC: 2.4.1.10; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SACB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS BETA PROPELLER, GLYCOSHIDE HYDROLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUTTERER,G.MENG REVDAT 7 01-NOV-23 3BYN 1 REMARK REVDAT 6 10-NOV-21 3BYN 1 SEQADV HETSYN REVDAT 5 29-JUL-20 3BYN 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 30-MAY-12 3BYN 1 HETATM REVDAT 3 13-JUL-11 3BYN 1 VERSN REVDAT 2 24-FEB-09 3BYN 1 VERSN REVDAT 1 12-FEB-08 3BYN 0 JRNL AUTH G.MENG,K.FUTTERER JRNL TITL DONOR SUBSTRATE RECOGNITION IN THE RAFFINOSE-BOUND E342A JRNL TITL 2 MUTANT OF FRUCTOSYLTRANSFERASE BACILLUS SUBTILIS JRNL TITL 3 LEVANSUCRASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 23811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1724 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.768 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3549 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4813 ; 1.066 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 5.963 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;36.685 ;25.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 582 ;11.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2697 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1628 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2443 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 323 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.087 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2248 ; 0.248 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3504 ; 0.416 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 0.715 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1309 ; 1.144 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 473 REMARK 3 ORIGIN FOR THE GROUP (A): 44.1377 29.7902 15.2224 REMARK 3 T TENSOR REMARK 3 T11: -0.0833 T22: -0.0881 REMARK 3 T33: -0.0704 T12: 0.0160 REMARK 3 T13: -0.0084 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7993 L22: 0.6977 REMARK 3 L33: 0.9297 L12: 0.0664 REMARK 3 L13: 0.0753 L23: 0.2130 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0240 S13: 0.0196 REMARK 3 S21: 0.0411 S22: 0.0030 S23: -0.0099 REMARK 3 S31: -0.0380 S32: 0.0003 S33: 0.0095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSCMIC CONFOCAL MIRROR OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 62.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.09700 REMARK 200 R SYM FOR SHELL (I) : 0.09700 REMARK 200 FOR SHELL : 25.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1OYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DIAMMONIUM PHOSPHATE, SODIUM ACETATE, REMARK 280 PH 6.3, MICRODIALYSIS, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.60550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.02100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.02100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.60550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PHE A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 GLN A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 LEU A 13 REMARK 465 THR A 14 REMARK 465 PHE A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 GLN A 26 REMARK 465 ALA A 27 REMARK 465 PHE A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 THR A 32 REMARK 465 ASN A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 LYS A 80 CE NZ REMARK 470 LYS A 114 CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 HIS A 186 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 223 CE NZ REMARK 470 GLU A 275 CD OE1 OE2 REMARK 470 ARG A 291 NH1 NH2 REMARK 470 LYS A 296 CE NZ REMARK 470 LYS A 439 CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 454 CD CE NZ REMARK 470 ASN A 472 OD1 ND2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 409 O MET A 430 1.81 REMARK 500 O LEU A 391 O LYS A 454 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 85 -121.47 -112.32 REMARK 500 ASP A 86 119.26 -35.00 REMARK 500 ASN A 236 -127.77 39.15 REMARK 500 LEU A 245 85.00 -160.18 REMARK 500 LYS A 285 -72.96 69.75 REMARK 500 ASN A 310 44.35 -146.98 REMARK 500 THR A 336 -33.29 77.04 REMARK 500 ASN A 392 54.46 -102.49 REMARK 500 LYS A 393 -30.95 71.54 REMARK 500 SER A 412 30.78 76.17 REMARK 500 MET A 430 -69.42 -93.39 REMARK 500 LEU A 464 -164.67 -103.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 475 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 241 OD1 REMARK 620 2 GLN A 272 OE1 83.7 REMARK 620 3 LEU A 308 O 98.6 96.3 REMARK 620 4 ASN A 310 OD1 163.3 80.6 88.8 REMARK 620 5 ASP A 339 OD1 125.5 150.6 77.0 70.7 REMARK 620 6 ASP A 339 OD2 75.8 158.0 79.5 120.5 49.8 REMARK 620 7 HOH A 632 O 86.8 100.1 163.2 90.3 86.9 86.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BYJ RELATED DB: PDB REMARK 900 RELATED ID: 3BYK RELATED DB: PDB REMARK 900 RELATED ID: 3BYL RELATED DB: PDB DBREF 3BYN A 1 473 UNP P05655 SACB_BACSU 1 473 SEQADV 3BYN ALA A 342 UNP P05655 GLU 342 ENGINEERED MUTATION SEQRES 1 A 473 MET ASN ILE LYS LYS PHE ALA LYS GLN ALA THR VAL LEU SEQRES 2 A 473 THR PHE THR THR ALA LEU LEU ALA GLY GLY ALA THR GLN SEQRES 3 A 473 ALA PHE ALA LYS GLU THR ASN GLN LYS PRO TYR LYS GLU SEQRES 4 A 473 THR TYR GLY ILE SER HIS ILE THR ARG HIS ASP MET LEU SEQRES 5 A 473 GLN ILE PRO GLU GLN GLN LYS ASN GLU LYS TYR GLN VAL SEQRES 6 A 473 PRO GLU PHE ASP SER SER THR ILE LYS ASN ILE SER SER SEQRES 7 A 473 ALA LYS GLY LEU ASP VAL TRP ASP SER TRP PRO LEU GLN SEQRES 8 A 473 ASN ALA ASP GLY THR VAL ALA ASN TYR HIS GLY TYR HIS SEQRES 9 A 473 ILE VAL PHE ALA LEU ALA GLY ASP PRO LYS ASN ALA ASP SEQRES 10 A 473 ASP THR SER ILE TYR MET PHE TYR GLN LYS VAL GLY GLU SEQRES 11 A 473 THR SER ILE ASP SER TRP LYS ASN ALA GLY ARG VAL PHE SEQRES 12 A 473 LYS ASP SER ASP LYS PHE ASP ALA ASN ASP SER ILE LEU SEQRES 13 A 473 LYS ASP GLN THR GLN GLU TRP SER GLY SER ALA THR PHE SEQRES 14 A 473 THR SER ASP GLY LYS ILE ARG LEU PHE TYR THR ASP PHE SEQRES 15 A 473 SER GLY LYS HIS TYR GLY LYS GLN THR LEU THR THR ALA SEQRES 16 A 473 GLN VAL ASN VAL SER ALA SER ASP SER SER LEU ASN ILE SEQRES 17 A 473 ASN GLY VAL GLU ASP TYR LYS SER ILE PHE ASP GLY ASP SEQRES 18 A 473 GLY LYS THR TYR GLN ASN VAL GLN GLN PHE ILE ASP GLU SEQRES 19 A 473 GLY ASN TYR SER SER GLY ASP ASN HIS THR LEU ARG ASP SEQRES 20 A 473 PRO HIS TYR VAL GLU ASP LYS GLY HIS LYS TYR LEU VAL SEQRES 21 A 473 PHE GLU ALA ASN THR GLY THR GLU ASP GLY TYR GLN GLY SEQRES 22 A 473 GLU GLU SER LEU PHE ASN LYS ALA TYR TYR GLY LYS SER SEQRES 23 A 473 THR SER PHE PHE ARG GLN GLU SER GLN LYS LEU LEU GLN SEQRES 24 A 473 SER ASP LYS LYS ARG THR ALA GLU LEU ALA ASN GLY ALA SEQRES 25 A 473 LEU GLY MET ILE GLU LEU ASN ASP ASP TYR THR LEU LYS SEQRES 26 A 473 LYS VAL MET LYS PRO LEU ILE ALA SER ASN THR VAL THR SEQRES 27 A 473 ASP GLU ILE ALA ARG ALA ASN VAL PHE LYS MET ASN GLY SEQRES 28 A 473 LYS TRP TYR LEU PHE THR ASP SER ARG GLY SER LYS MET SEQRES 29 A 473 THR ILE ASP GLY ILE THR SER ASN ASP ILE TYR MET LEU SEQRES 30 A 473 GLY TYR VAL SER ASN SER LEU THR GLY PRO TYR LYS PRO SEQRES 31 A 473 LEU ASN LYS THR GLY LEU VAL LEU LYS MET ASP LEU ASP SEQRES 32 A 473 PRO ASN ASP VAL THR PHE THR TYR SER HIS PHE ALA VAL SEQRES 33 A 473 PRO GLN ALA LYS GLY ASN ASN VAL VAL ILE THR SER TYR SEQRES 34 A 473 MET THR ASN ARG GLY PHE TYR ALA ASP LYS GLN SER THR SEQRES 35 A 473 PHE ALA PRO SER PHE LEU LEU ASN ILE LYS GLY LYS LYS SEQRES 36 A 473 THR SER VAL VAL LYS ASP SER ILE LEU GLU GLN GLY GLN SEQRES 37 A 473 LEU THR VAL ASN LYS HET FRU B 1 12 HET GLC B 2 11 HET GLA B 3 11 HET CA A 475 1 HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 2 FRU C6 H12 O6 FORMUL 2 GLC C6 H12 O6 FORMUL 2 GLA C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 HOH *275(H2 O) HELIX 1 1 THR A 47 GLN A 53 1 7 HELIX 2 2 GLN A 53 GLN A 58 1 6 HELIX 3 3 LYS A 59 GLN A 64 5 6 HELIX 4 4 ASP A 69 ILE A 73 5 5 HELIX 5 5 ILE A 76 LYS A 80 5 5 HELIX 6 6 SER A 132 TRP A 136 5 5 HELIX 7 7 SER A 146 ALA A 151 1 6 HELIX 8 8 ILE A 155 GLN A 159 5 5 HELIX 9 9 ASN A 227 GLY A 235 1 9 HELIX 10 10 ASN A 236 GLY A 240 5 5 HELIX 11 11 GLY A 273 TYR A 283 5 11 HELIX 12 12 SER A 286 SER A 300 1 15 HELIX 13 13 LYS A 302 ALA A 309 1 8 HELIX 14 14 SER A 362 MET A 364 5 3 SHEET 1 A 5 SER A 44 HIS A 45 0 SHEET 2 A 5 LEU A 324 ALA A 333 1 O ALA A 333 N SER A 44 SHEET 3 A 5 GLY A 311 LEU A 318 -1 N GLU A 317 O LYS A 325 SHEET 4 A 5 HIS A 256 ASN A 264 -1 N LYS A 257 O LEU A 318 SHEET 5 A 5 ARG A 246 ASP A 253 -1 N HIS A 249 O VAL A 260 SHEET 1 B 8 LYS A 137 ARG A 141 0 SHEET 2 B 8 SER A 120 LYS A 127 -1 N TYR A 125 O LYS A 137 SHEET 3 B 8 TYR A 103 GLY A 111 -1 N VAL A 106 O PHE A 124 SHEET 4 B 8 ASP A 83 GLN A 91 -1 N LEU A 90 O ILE A 105 SHEET 5 B 8 GLN A 161 PHE A 169 1 O ALA A 167 N GLN A 91 SHEET 6 B 8 ILE A 175 SER A 183 -1 O PHE A 178 N SER A 166 SHEET 7 B 8 LYS A 189 ALA A 201 -1 O ALA A 195 N LEU A 177 SHEET 8 B 8 LEU A 206 PHE A 218 -1 O ILE A 217 N LEU A 192 SHEET 1 C 4 ALA A 342 MET A 349 0 SHEET 2 C 4 LYS A 352 ARG A 360 -1 O PHE A 356 N ASN A 345 SHEET 3 C 4 ILE A 374 SER A 381 -1 O SER A 381 N TRP A 353 SHEET 4 C 4 LYS A 389 PRO A 390 -1 O LYS A 389 N VAL A 380 SHEET 1 D 4 ALA A 342 MET A 349 0 SHEET 2 D 4 LYS A 352 ARG A 360 -1 O PHE A 356 N ASN A 345 SHEET 3 D 4 ILE A 374 SER A 381 -1 O SER A 381 N TRP A 353 SHEET 4 D 4 LEU A 396 MET A 400 -1 O MET A 400 N ILE A 374 SHEET 1 E 4 TYR A 411 VAL A 416 0 SHEET 2 E 4 ASN A 423 TYR A 429 -1 O VAL A 425 N VAL A 416 SHEET 3 E 4 PHE A 447 LYS A 452 -1 O PHE A 447 N ILE A 426 SHEET 4 E 4 LYS A 455 VAL A 458 -1 O SER A 457 N ASN A 450 LINK O2 FRU B 1 C1 GLC B 2 1555 1555 1.44 LINK O6 GLC B 2 C1 GLA B 3 1555 1555 1.43 LINK OD1 ASP A 241 CA CA A 475 1555 1555 2.38 LINK OE1 GLN A 272 CA CA A 475 1555 1555 2.34 LINK O LEU A 308 CA CA A 475 1555 1555 2.30 LINK OD1 ASN A 310 CA CA A 475 1555 1555 2.43 LINK OD1 ASP A 339 CA CA A 475 1555 1555 2.56 LINK OD2 ASP A 339 CA CA A 475 1555 1555 2.65 LINK CA CA A 475 O HOH A 632 1555 1555 2.45 CISPEP 1 GLY A 386 PRO A 387 0 1.26 CRYST1 51.211 66.700 124.042 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008060 0.00000